prot_H-elongata_contig62606.13834.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig62606.13834.1
Unique Nameprot_H-elongata_contig62606.13834.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length67
Homology
BLAST of mRNA_H-elongata_contig62606.13834.1 vs. uniprot
Match: A0A6H5JYY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY0_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.570e-26
Identity = 47/67 (70.15%), Postives = 52/67 (77.61%), Query Frame = 0
Query:    1 DDLTQADDQGSACICGRGDDEPLRPKDLCFVQCDCCGWWLHGGCCGFVPKTTAESEEKEQEFICVAC 67
            DDLT   D+GSAC+CGRGDDEPL P DLCFVQCD CGWWLHGGCCGFVP    E   +E++F CV C
Sbjct:  311 DDLTPT-DEGSACVCGRGDDEPLAPGDLCFVQCDACGWWLHGGCCGFVPGVDGE---EEKDFTCVVC 373          
BLAST of mRNA_H-elongata_contig62606.13834.1 vs. uniprot
Match: D7FHS8_ECTSI (SNF2 helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS8_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 5.450e-26
Identity = 47/67 (70.15%), Postives = 51/67 (76.12%), Query Frame = 0
Query:    1 DDLTQADDQGSACICGRGDDEPLRPKDLCFVQCDCCGWWLHGGCCGFVPKTTAESEEKEQEFICVAC 67
            DDLT   D+GSAC+CGRGDDEPL P DLCFVQCD CGWWLHGGCCGFVP    E   +E+ F CV C
Sbjct:  511 DDLTPT-DEGSACVCGRGDDEPLAPGDLCFVQCDACGWWLHGGCCGFVPGVDGE---EEKGFTCVVC 573          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62606.13834.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JYY0_9PHAE1.570e-2670.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHS8_ECTSI5.450e-2670.15SNF2 helicase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..67
e-value: 4.2E-9
score: 37.8
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 13..67
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 5..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62606contigH-elongata_contig62606:3147..3347 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62606.13834.1mRNA_H-elongata_contig62606.13834.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig62606 3147..3347 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig62606.13834.1 ID=prot_H-elongata_contig62606.13834.1|Name=mRNA_H-elongata_contig62606.13834.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
DDLTQADDQGSACICGRGDDEPLRPKDLCFVQCDCCGWWLHGGCCGFVPK
TTAESEEKEQEFICVAC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD