mRNA_H-elongata_contig62606.13834.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62606.13834.1
Unique NamemRNA_H-elongata_contig62606.13834.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62606.13834.1 vs. uniprot
Match: A0A6H5JYY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY0_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.570e-26
Identity = 47/67 (70.15%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 DDLTQADDQGSACICGRGDDEPLRPKDLCFVQCDCCGWWLHGGCCGFVPKTTAESEEKEQEFICVAC 201
            DDLT   D+GSAC+CGRGDDEPL P DLCFVQCD CGWWLHGGCCGFVP    E   +E++F CV C
Sbjct:  311 DDLTPT-DEGSACVCGRGDDEPLAPGDLCFVQCDACGWWLHGGCCGFVPGVDGE---EEKDFTCVVC 373
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BLAST of mRNA_H-elongata_contig62606.13834.1 vs. uniprot
Match: D7FHS8_ECTSI (SNF2 helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS8_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 5.450e-26
Identity = 47/67 (70.15%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    1 DDLTQADDQGSACICGRGDDEPLRPKDLCFVQCDCCGWWLHGGCCGFVPKTTAESEEKEQEFICVAC 201
            DDLT   D+GSAC+CGRGDDEPL P DLCFVQCD CGWWLHGGCCGFVP    E   +E+ F CV C
Sbjct:  511 DDLTPT-DEGSACVCGRGDDEPLAPGDLCFVQCDACGWWLHGGCCGFVPGVDGE---EEKGFTCVVC 573
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62606.13834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JYY0_9PHAE1.570e-2670.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHS8_ECTSI5.450e-2670.15SNF2 helicase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62606contigH-elongata_contig62606:3147..3347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue2.5e-21
Seed eggNOG ortholog2880.D7FHS8
KEGG koko:K15710
EggNOG free text desc.ATP binding
EggNOG OGsCOG0553@1,KOG0298@2759
EC2.3.2.27
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSNF2 helicase
Ec32 orthologEc-07_006640.2
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.7885232-CDS-H-elongata_contig62606:3146..33471622931008.7885232-CDS-H-elongata_contig62606:3146..3347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62606 3147..3347 -
1691679660.4574273-CDS-H-elongata_contig62606:3146..33471691679660.4574273-CDS-H-elongata_contig62606:3146..3347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62606 3147..3347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62606.13834.1prot_H-elongata_contig62606.13834.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62606 3147..3347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62606.13834.1

>prot_H-elongata_contig62606.13834.1 ID=prot_H-elongata_contig62606.13834.1|Name=mRNA_H-elongata_contig62606.13834.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
DDLTQADDQGSACICGRGDDEPLRPKDLCFVQCDCCGWWLHGGCCGFVPK
TTAESEEKEQEFICVAC
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mRNA from alignment at H-elongata_contig62606:3147..3347-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62606.13834.1 ID=mRNA_H-elongata_contig62606.13834.1|Name=mRNA_H-elongata_contig62606.13834.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig62606:3147..3347- (Himanthalia elongata Himel1 dioecious)
GACGATCTCACCCAGGCCGACGACCAGGGATCGGCCTGCATCTGCGGGAG
GGGAGACGACGAACCCCTTCGTCCGAAGGACCTGTGCTTTGTGCAATGCG
ATTGCTGCGGCTGGTGGTTGCACGGGGGGTGCTGCGGGTTCGTGCCGAAG
ACGACGGCGGAGTCGGAAGAGAAAGAACAAGAGTTCATATGTGTCGCGTG
C
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Coding sequence (CDS) from alignment at H-elongata_contig62606:3147..3347-

>mRNA_H-elongata_contig62606.13834.1 ID=mRNA_H-elongata_contig62606.13834.1|Name=mRNA_H-elongata_contig62606.13834.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig62606:3147..3347- (Himanthalia elongata Himel1 dioecious)
GACGATCTCACCCAGGCCGACGACCAGGGATCGGCCTGCATCTGCGGGAG
GGGAGACGACGAACCCCTTCGTCCGAAGGACCTGTGCTTTGTGCAATGCG
ATTGCTGCGGCTGGTGGTTGCACGGGGGGTGCTGCGGGTTCGTGCCGAAG
ACGACGGCGGAGTCGGAAGAGAAAGAACAAGAGTTCATATGTGTCGCGTG
CGACGATCTCACCCAGGCCGACGACCAGGGATCGGCCTGCATCTGCGGGA
GGGGAGACGACGAACCCCTTCGTCCGAAGGACCTGTGCTTTGTGCAATGC
GATTGCTGCGGCTGGTGGTTGCACGGGGGGTGCTGCGGGTTCGTGCCGAA
GACGACGGCGGAGTCGGAAGAGAAAGAACAAGAGTTCATATGTGTCGCGT
GC
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