mRNA_H-elongata_contig62599.13833.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62599.13833.1
Unique NamemRNA_H-elongata_contig62599.13833.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62599.13833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62599contigH-elongata_contig62599:2357..3448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.723411-CDS-H-elongata_contig62599:2356..24271622931008.723411-CDS-H-elongata_contig62599:2356..2427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62599 2357..2427 +
1691679660.431101-CDS-H-elongata_contig62599:2356..24271691679660.431101-CDS-H-elongata_contig62599:2356..2427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62599 2357..2427 +
1622931008.7419183-CDS-H-elongata_contig62599:3261..34481622931008.7419183-CDS-H-elongata_contig62599:3261..3448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62599 3262..3448 +
1691679660.4406884-CDS-H-elongata_contig62599:3261..34481691679660.4406884-CDS-H-elongata_contig62599:3261..3448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62599 3262..3448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62599.13833.1prot_H-elongata_contig62599.13833.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62599 2357..3448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62599.13833.1

>prot_H-elongata_contig62599.13833.1 ID=prot_H-elongata_contig62599.13833.1|Name=mRNA_H-elongata_contig62599.13833.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
GPGGGGGGGINGGVNKGGGGGAARDGGYNDGGYRGGGGGAGVGNGGGGGG
IQDGYRGAGGGGGGGTRDRDGRAGREGDSGKDMKDR
back to top

mRNA from alignment at H-elongata_contig62599:2357..3448+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62599.13833.1 ID=mRNA_H-elongata_contig62599.13833.1|Name=mRNA_H-elongata_contig62599.13833.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1092bp|location=Sequence derived from alignment at H-elongata_contig62599:2357..3448+ (Himanthalia elongata Himel1 dioecious)
GGCCCCGGCGGTGGGGGTGGCGGCGGCATAAACGGAGGCGTTAATAAGGG
GGGTGGGGGCGGGGCGGCCCGGTCTGGTGGTGCAGGGGGGCACCTCCAAG
CAGCAGCTGGTGGTGGGATTCAGCACGTGATGATGTATCCGCCCCCCCAG
GGCGGGAACGGGCATCTGTTGCCACCACAACAACGTCAGCAACAGCAACC
GCCACAGGGAGGGGCGCCTGGTGGTGACCCCTCTGCGGTGGCGGCATCGG
CAGCCGCGACACAAATGTACGTGCCCATGCCGCAGGCGGGGTACGGATTC
ATCCCGCAGATGACCCACATGCAGGGCGGAGGAGTACCCCTCTATCAGGT
TGCGGGGCATACGCTCGACGGAAGTCAGGGTGCCAGCCGTCCCAACGGAG
TCGCAGGGAGTGGCGGCGGTGCAGGAAGCGCGGCTGCGTCCAGTGGGGGC
CACGGTGGCGGCAGTGGGAGCCCAACGATCGCGTCCCCCCCTCCGTCCGC
GCAGCAGCCTCCGCCGCAAGGCTTCCAGGTGCACTATGCTCTGACACCGC
AGGGTATTGTACCTCTGGTGCCGATGATGCCCAACGGGGCGGGCGGACTC
ACGAATCCCGCTGCGCTGTACCACGGTATGGGGGGAATTTTCGACGATGG
CAGGGGCGGAGTACCCGCAATCCCCGCCGTTCTTCCGGGGATCAACGGTA
TTGCCGGTCACGAGAAGGGGCGCCTGTCGCCCCCCCCTCAGCTGCCGGGC
GGGCCATCGTCGATGATCTCGCGATACGGTGGCTCTTCCCTGCCCCCCCC
GCAGTCCCATCTCGTCCAAAACCCGCACCAGGCCTTGCAGCCCATGCACG
CCCCCGCGTGGTCTGTAGGTGGGCATGAAGGAGGCCCGATGGGATACCAG
GAAAGCGACGGGGGCTACAACGACGGAGGGTATCGTGGTGGAGGCGGCGG
AGCAGGGGTGGGGAATGGTGGTGGCGGCGGGGGCATACAAGATGGATACC
GGGGAGCAGGTGGAGGTGGTGGAGGCGGTACCCGGGATAGGGACGGAAGA
GCTGGGCGCGAAGGAGACTCCGGGAAGGATATGAAGGACCGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig62599:2357..3448+

>mRNA_H-elongata_contig62599.13833.1 ID=mRNA_H-elongata_contig62599.13833.1|Name=mRNA_H-elongata_contig62599.13833.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig62599:2357..3448+ (Himanthalia elongata Himel1 dioecious)
GGCCCCGGCGGTGGGGGTGGCGGCGGCATAAACGGAGGCGTTAATAAGGG
GGGTGGGGGCGGGGCGGCCCGGGCCCCGGCGGTGGGGGTGGCGGCGGCAT
AAACGGAGGCGTTAATAAGGGGGGTGGGGGCGGGGCGGCCCGCGACGGGG
GCTACAACGACGGAGGGTATCGTGGTGGAGGCGGCGGAGCAGGGGTGGGG
AATGGTGGTGGCGGCGGGGGCATACAAGATGGATACCGGGGAGCAGGTGG
AGGTGGTGGAGGCGGTACCCGGGATAGGGACGGAAGAGCTGGGCGCGAAG
GAGACTCCGGGAAGGATATGAAGGACCGACGACGGGGGCTACAACGACGG
AGGGTATCGTGGTGGAGGCGGCGGAGCAGGGGTGGGGAATGGTGGTGGCG
GCGGGGGCATACAAGATGGATACCGGGGAGCAGGTGGAGGTGGTGGAGGC
GGTACCCGGGATAGGGACGGAAGAGCTGGGCGCGAAGGAGACTCCGGGAA
GGATATGAAGGACCGA
back to top