mRNA_H-elongata_contig62575.13830.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62575.13830.1
Unique NamemRNA_H-elongata_contig62575.13830.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62575.13830.1 vs. uniprot
Match: A0A6H5JBU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBU0_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.490e-36
Identity = 133/405 (32.84%), Postives = 180/405 (44.44%), Query Frame = 3 
Query:   96 AATLHCVALDESGDFPADRELGLFEAAPGDRYRETSSPEASEMRQISGAQVEISVRKEEKNP------HSPLAYVVDVSMLLQVA-----LEGGARKQDRRQDGEANRVSSEGLKVASGNESPISMLDRQKIGMAVTAAAV--ASVKGPAEAQAAVSALAAWDILAAAEEAGVFA-VHVELAAVFGRGGDWYATNKTVVLTRNGTDKSAYSSSLPSWPSAYMASGRVGDFDGQDIMFGALGWRLEEDFRAKLDEIAVADVKIYHKPYAGVTGVVNSSFSGQSAPLL--QGTLCKRGSNGVDQHVLGKEESRTIRALFMPYTEQRSHVHRSAAPPIGSDSNVPADEWFPTTEREQAVIVPPSRACVVSEMEDQEWWGDLEEKERGRGMADVHALSRLPNWNPGEWR 1262
            AA  HCVA+DE G FPA+  LGLFE  PG     T         +++ A VE S   + +N        +P    +   ++L+V       EGG      R+ GE          V +G             GM +TAAA   A+ + PAEAQ A+SALAAW+++   E   +   + VE+ A FG  GDWY  +KT+ LT +GT  S          SA ++S     FD          W+   D  +KLDE   ADV++Y        G  ++    Q A LL  +GTLCKR S    +    +    T++A   PY E+                        P    E   I P   + VVSE+ D+EWW   EE+E GRGM  V AL RLP W PG+W+
Sbjct:   62 AAARHCVAVDEVGRFPANHALGLFETEPGRLVLGTP--------RVTDASVEFSALPQRQNAGGSNSDETPATGTIVFKVVLEVDNTGRWREGGGGTTSGRRTGEP---------VPTGE------------GMEMTAAAATAATAENPAEAQMAISALAAWNLMTTRETPAMLPMIRVEVGAAFGYHGDWYTASKTIPLTSDGTGHS----------SALLSSAT---FD----------WQPAPDVWSKLDEPMAADVRVY--------GTASTPTEEQEAGLLLLRGTLCKRASGFGGRSTRDETTQGTMKAALTPYAER-----------------------LPAVAAEAVAISPSRPSVVVSEIRDEEWWRAREEEESGRGMDAVDALPRLPRWKPGDWK 383
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62575.13830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JBU0_9PHAE2.490e-3632.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62575contigH-elongata_contig62575:1480..3477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1998
Cds size1269
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62575.13830.1prot_H-elongata_contig62575.13830.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62575 1701..2969 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.4893389-UTR-H-elongata_contig62575:1479..17001622931008.4893389-UTR-H-elongata_contig62575:1479..1700Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62575 1480..1700 +
1691679660.3311744-UTR-H-elongata_contig62575:1479..17001691679660.3311744-UTR-H-elongata_contig62575:1479..1700Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62575 1480..1700 +
1622931008.5294583-UTR-H-elongata_contig62575:2969..34771622931008.5294583-UTR-H-elongata_contig62575:2969..3477Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62575 2970..3477 +
1691679660.3539603-UTR-H-elongata_contig62575:2969..34771691679660.3539603-UTR-H-elongata_contig62575:2969..3477Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62575 2970..3477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931008.5105112-CDS-H-elongata_contig62575:1700..29691622931008.5105112-CDS-H-elongata_contig62575:1700..2969Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62575 1701..2969 +
1691679660.345022-CDS-H-elongata_contig62575:1700..29691691679660.345022-CDS-H-elongata_contig62575:1700..2969Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62575 1701..2969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62575.13830.1

>prot_H-elongata_contig62575.13830.1 ID=prot_H-elongata_contig62575.13830.1|Name=mRNA_H-elongata_contig62575.13830.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=423bp
MRQISGAQVEISVRKEEKNPHSPLAYVVDVSMLLQVALEGGARKQDRRQD
GEANRVSSEGLKVASGNESPISMLDRQKIGMAVTAAAVASVKGPAEAQAA
VSALAAWDILAAAEEAGVFAVHVELAAVFGRGGDWYATNKTVVLTRNGTD
KSAYSSSLPSWPSAYMASGRVGDFDGQDIMFGALGWRLEEDFRAKLDEIA
VADVKIYHKPYAGVTGVVNSSFSGQSAPLLQGTLCKRGSNGVDQHVLGKE
ESRTIRALFMPYTEQRSHVHRSAAPPIGSDSNVPADEWFPTTEREQAVIV
PPSRACVVSEMEDQEWWGDLEEKERGRGMADVHALSRLPNWNPGEWRTLQ
EGRRKQREKDERERVKKAAHRRERTRAASGDTIGVRSKERLGGNSRVVGV
VRRLWGAAAREWERFRRRFCTR*
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mRNA from alignment at H-elongata_contig62575:1480..3477+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62575.13830.1 ID=mRNA_H-elongata_contig62575.13830.1|Name=mRNA_H-elongata_contig62575.13830.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1998bp|location=Sequence derived from alignment at H-elongata_contig62575:1480..3477+ (Himanthalia elongata Himel1 dioecious)
AGGTATCAAGCGGGCGTTCCAACCATGTAGAAACTCACGATAAATTGAAG
CCTGCTGCTGCCGCAGCCGTAGACCGTGCGAAGGAAAACCTTATAGCTGC
TACCCTTCACTGCGTTGCCCTCGATGAATCGGGGGATTTCCCCGCTGACC
GCGAGCTCGGGCTATTCGAGGCAGCCCCTGGGGATCGGTATCGGGAAACT
TCCTCCCCTGAGGCGAGTGAAATGCGCCAAATCTCTGGGGCTCAGGTTGA
AATTTCCGTGCGAAAGGAGGAGAAAAATCCCCACTCGCCGTTGGCGTATG
TTGTCGACGTATCAATGTTGTTACAAGTTGCTCTGGAAGGAGGCGCGAGG
AAACAAGATCGACGACAGGATGGCGAGGCCAATCGCGTAAGCTCAGAAGG
CTTGAAAGTAGCCTCTGGAAATGAATCGCCGATCTCGATGCTAGATAGGC
AAAAAATAGGAATGGCGGTAACGGCGGCGGCGGTGGCCTCCGTGAAGGGT
CCTGCAGAAGCACAGGCGGCGGTATCAGCCCTGGCGGCTTGGGATATTTT
GGCAGCCGCCGAGGAGGCGGGCGTATTTGCCGTGCACGTGGAGCTGGCCG
CCGTATTTGGCCGTGGCGGGGACTGGTACGCGACCAACAAAACCGTCGTT
CTGACAAGGAACGGCACCGATAAATCAGCGTATTCATCCTCGCTGCCGTC
ATGGCCTTCGGCGTATATGGCAAGCGGAAGGGTTGGTGACTTCGATGGGC
AAGATATTATGTTTGGAGCTCTCGGATGGCGGCTGGAAGAAGACTTTCGC
GCCAAGCTGGACGAGATCGCGGTTGCCGATGTGAAAATATATCACAAACC
ATACGCGGGAGTGACTGGTGTTGTTAATTCGTCCTTTTCAGGACAATCCG
CGCCGCTGCTTCAAGGGACATTGTGTAAGCGTGGTTCTAACGGTGTTGAT
CAGCACGTTCTGGGTAAGGAAGAATCCAGAACAATACGAGCGTTGTTTAT
GCCTTATACAGAGCAACGGTCGCATGTCCATCGCAGCGCCGCACCTCCTA
TCGGTAGCGATAGCAACGTCCCAGCGGACGAGTGGTTCCCCACCACTGAG
AGAGAACAAGCGGTGATCGTTCCACCCTCACGTGCTTGCGTTGTATCTGA
AATGGAGGATCAAGAGTGGTGGGGAGATCTCGAGGAGAAGGAGCGCGGTC
GGGGTATGGCGGACGTGCATGCCTTGTCGCGGCTCCCTAACTGGAACCCC
GGCGAGTGGCGGACACTTCAAGAGGGAAGAAGGAAACAGCGAGAAAAAGA
TGAACGCGAGAGAGTGAAGAAAGCCGCTCATCGGCGAGAACGGACGCGTG
CCGCAAGCGGTGATACGATTGGAGTTCGCAGCAAGGAGAGACTTGGGGGT
AACTCGAGAGTTGTGGGTGTAGTAAGGCGGCTTTGGGGGGCAGCAGCGAG
AGAGTGGGAAAGGTTCCGTCGGCGTTTTTGTACTAGATAGAATCAGGGAG
TGAAGCCTCCAATCCGCTTAGTCACAGGAACAATAAAAGACTTCGGGACG
TACCCTTAGAGCAGATTCACCCGACTGCCTCGAAGTTGGAAATAACTTTA
TCTTGATGTTCTTCAGAACTGTGGATGCAATCTTCCTTGGACATATTTTT
CCCTCCTCGGGTCCAGGAAAACGACAATAATGTGAATGCGTTTGACGGCG
TTCGACGGCCCCCCTAAAATTGTGATTTTGATGCGGTCTGCGTACTACGT
TCGCGTCAAACACTGTAGATGCAGGAGTACTAAGCATGCATCTCAATTAC
ATTAATCGTAGGCGTGGCCCGGAGATAGCTAGGGAGACCACTTAGAACTA
TAATAGGTGGTTTAGCCATTATTGCTATACATAGTTGAATTGCGCCATCG
GCATAAAGTGAGATTTTGATATTATGCAAGCTTATACAGGTAACCCCAAC
GTAGCCTCTGTGAAACGTACTTATATGCCTAAAATATGTAACCATTTC
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Coding sequence (CDS) from alignment at H-elongata_contig62575:1480..3477+

>mRNA_H-elongata_contig62575.13830.1 ID=mRNA_H-elongata_contig62575.13830.1|Name=mRNA_H-elongata_contig62575.13830.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2538bp|location=Sequence derived from alignment at H-elongata_contig62575:1480..3477+ (Himanthalia elongata Himel1 dioecious)
ATGCGCCAAATCTCTGGGGCTCAGGTTGAAATTTCCGTGCGAAAGGAGGA
GAAAAATCCCCACTCGCCGTTGGCGTATGTTGTCGACGTATCAATGTTGT
TACAAGTTGCTCTGGAAGGAGGCGCGAGGAAACAAGATCGACGACAGGAT
GGCGAGGCCAATCGCGTAAGCTCAGAAGGCTTGAAAGTAGCCTCTGGAAA
TGAATCGCCGATCTCGATGCTAGATAGGCAAAAAATAGGAATGGCGGTAA
CGGCGGCGGCGGTGGCCTCCGTGAAGGGTCCTGCAGAAGCACAGGCGGCG
GTATCAGCCCTGGCGGCTTGGGATATTTTGGCAGCCGCCGAGGAGGCGGG
CGTATTTGCCGTGCACGTGGAGCTGGCCGCCGTATTTGGCCGTGGCGGGG
ACTGGTACGCGACCAACAAAACCGTCGTTCTGACAAGGAACGGCACCGAT
AAATCAGCGTATTCATCCTCGCTGCCGTCATGGCCTTCGGCGTATATGGC
AAGCGGAAGGGTTGGTGACTTCGATGGGCAAGATATTATGTTTGGAGCTC
TCGGATGGCGGCTGGAAGAAGACTTTCGCGCCAAGCTGGACGAGATCGCG
GTTGCCGATGTGAAAATATATCACAAACCATACGCGGGAGTGACTGGTGT
TGTTAATTCGTCCTTTTCAGGACAATCCGCGCCGCTGCTTCAAGGGACAT
TGTGTAAGCGTGGTTCTAACGGTGTTGATCAGCACGTTCTGGGTAAGGAA
GAATCCAGAACAATACGAGCGTTGTTTATGCCTTATACAGAGCAACGGTC
GCATGTCCATCGCAGCGCCGCACCTCCTATCGGTAGCGATAGCAACGTCC
CAGCGGACGAGTGGTTCCCCACCACTGAGAGAGAACAAGCGGTGATCGTT
CCACCCTCACGTGCTTGCGTTGTATCTGAAATGGAGGATCAAGAGTGGTG
GGGAGATCTCGAGGAGAAGGAGCGCGGTCGGGGTATGGCGGACGTGCATG
CCTTGTCGCGGCTCCCTAACTGGAACCCCGGCGAGTGGCGGACACTTCAA
GAGGGAAGAAGGAAACAGCGAGAAAAAGATGAACGCGAGAGAGTGAAGAA
AGCCGCTCATCGGCGAGAACGGACGCGTGCCGCAAGCGGTGATACGATTG
GAGTTCGCAGCAAGGAGAGACTTGGGGGTAACTCGAGAGTTGTGGGTGTA
GTAAGGCGGCTTTGGGGGGCAGCAGCGAGAGAGTGGGAAAGGTTCCGTCG
GCGTTTTTGTACTAGATAGATGCGCCAAATCTCTGGGGCTCAGGTTGAAA
TTTCCGTGCGAAAGGAGGAGAAAAATCCCCACTCGCCGTTGGCGTATGTT
GTCGACGTATCAATGTTGTTACAAGTTGCTCTGGAAGGAGGCGCGAGGAA
ACAAGATCGACGACAGGATGGCGAGGCCAATCGCGTAAGCTCAGAAGGCT
TGAAAGTAGCCTCTGGAAATGAATCGCCGATCTCGATGCTAGATAGGCAA
AAAATAGGAATGGCGGTAACGGCGGCGGCGGTGGCCTCCGTGAAGGGTCC
TGCAGAAGCACAGGCGGCGGTATCAGCCCTGGCGGCTTGGGATATTTTGG
CAGCCGCCGAGGAGGCGGGCGTATTTGCCGTGCACGTGGAGCTGGCCGCC
GTATTTGGCCGTGGCGGGGACTGGTACGCGACCAACAAAACCGTCGTTCT
GACAAGGAACGGCACCGATAAATCAGCGTATTCATCCTCGCTGCCGTCAT
GGCCTTCGGCGTATATGGCAAGCGGAAGGGTTGGTGACTTCGATGGGCAA
GATATTATGTTTGGAGCTCTCGGATGGCGGCTGGAAGAAGACTTTCGCGC
CAAGCTGGACGAGATCGCGGTTGCCGATGTGAAAATATATCACAAACCAT
ACGCGGGAGTGACTGGTGTTGTTAATTCGTCCTTTTCAGGACAATCCGCG
CCGCTGCTTCAAGGGACATTGTGTAAGCGTGGTTCTAACGGTGTTGATCA
GCACGTTCTGGGTAAGGAAGAATCCAGAACAATACGAGCGTTGTTTATGC
CTTATACAGAGCAACGGTCGCATGTCCATCGCAGCGCCGCACCTCCTATC
GGTAGCGATAGCAACGTCCCAGCGGACGAGTGGTTCCCCACCACTGAGAG
AGAACAAGCGGTGATCGTTCCACCCTCACGTGCTTGCGTTGTATCTGAAA
TGGAGGATCAAGAGTGGTGGGGAGATCTCGAGGAGAAGGAGCGCGGTCGG
GGTATGGCGGACGTGCATGCCTTGTCGCGGCTCCCTAACTGGAACCCCGG
CGAGTGGCGGACACTTCAAGAGGGAAGAAGGAAACAGCGAGAAAAAGATG
AACGCGAGAGAGTGAAGAAAGCCGCTCATCGGCGAGAACGGACGCGTGCC
GCAAGCGGTGATACGATTGGAGTTCGCAGCAAGGAGAGACTTGGGGGTAA
CTCGAGAGTTGTGGGTGTAGTAAGGCGGCTTTGGGGGGCAGCAGCGAGAG
AGTGGGAAAGGTTCCGTCGGCGTTTTTGTACTAGATAG
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