mRNA_H-elongata_contig6254.13824.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6254.13824.1
Unique NamemRNA_H-elongata_contig6254.13824.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig6254.13824.1 vs. uniprot
Match: D8LLJ0_ECTSI (START domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ0_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 2.520e-117
Identity = 261/608 (42.93%), Postives = 331/608 (54.44%), Query Frame = 2 
Query:   29 KSEFHMHMEVVATLATTILFIKWIPGEGTLMPVTDPPKRGRRRRPWGQHHSPPSTFVLTFSGQRPQKAEDFGNHFPHTGRFCPQHKMGRKLVEEG------GDEPQCLSAALAVLTALTTETASQNIPQASPPPSPFHLGGTGLYDWRSLRATISRKNWLRSY-QQPLTQQHVRRSPRTHQDGDQSVEW--SASPLQRLKVQALSKKDIITRWTSERCKPLRRTLSVYRPLIFPHAPSMRFLTRGRTVNSSASGIAQLASQLSDLTAEAGRRTIYAFSAIRVYGESGFRYFS---------KRVMRSGL--------VGGLDSAIKNIDVYGQQDEGSRLAHLTDATVQNVVDVVARDGWEHMATTSGVVVHRQYIALGSDGSPIPSSSLETTTGQVGEQAAMTRARARARAIEETL-GAAERDMAVTDD--EERAPRFACVKATAILSAPPEVVYLLFADNSRVAEYNEHCKEVMDLEILSPDTKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPIEHPAALRSNRYVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAADTRAGAMLVNTLCATSPVCFIRRLDAAAQKLTRELQE 1765
            ++E  M  E VA LA T+L +K     G         ++ RR  P   H+           G  P +A+DFG+ +P TGRF   HK G  L +E       G + +C  A +A + A  +  A Q                      R+L+    +      Y +QP   +H RR                SA   +R++ +  +  D    W   R +    T            P+   + R          + QL +QLS+LT E  RR     SA +  G  G R            + +   GL        +GG     K  +   ++ +   L  LTD  VQNVVDVVARDGWE +    GVVVHRQY+ALG DG+P              + A + +A A +  +   + G+A+  + V DD  + + P+FACVKA+AILS PPEVVYLLFADNSRV EYNEHC+EV DLE+LS D+KITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVS+P+EHPAA R++RYVRSEILLAGNFMR VPGDPSRTEFLMVTHVNPGGAA+TRAGAMLVN+LC +SPV FIRRL+ AA+KL  ELQ+
Sbjct:   29 EAENLMLRERVAILAATLLLLKCHSMSGGATGALPDQQQHRRHVP---HY-----------GCTPPRAQDFGSRYPQTGRFEAWHKRGLVLDDEPAGEEWEGADRECWGATIAAIVASGSTLALQ----------------------RTLKPDEQQSASAEGYGRQP---RHYRRXXXXXXXXXXXXXXXXSAPRFRRMRAELSANLDA---WRMRRRRARETT------------PAAAIVIRQH--------LTQLTAQLSELTGEGFRRAERLLSAAKASGNVGIRIAGCAELLRRRGRELFLLGLRKKQNPDGLGGEGKLGKGKEGEAERRKMRELQLLTDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTP----EAXXXXXXXXQAAGVPKAEASSAFVGGRVEGSADDSVPVGDDSGKSKPPQFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAAKKLMLELQQ 570
[Close]
BLAST of mRNA_H-elongata_contig6254.13824.1 vs. uniprot
Match: A0A6H5J623_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J623_9PHAE)

HSP 1 Score: 376 bits (965), Expect = 3.840e-116
Identity = 260/601 (43.26%), Postives = 330/601 (54.91%), Query Frame = 2 
Query:   44 MHMEVVATLATTILFIKWIPGEGTLMPVTDPPKRGRRRRPWGQHHSPPSTFVLTFSGQRPQKAEDFGNHFPHTGRFCPQHKMGRKLVEEGGDEP------QCLSAALAVLTALTTETASQNIPQASPPPSPFHLGGTGLYDWRSLRATISRKNWLRSYQQPLTQQHVRRSPRTHQDGDQSVEWSASP--LQRLKVQALSKKDIITRWTSERCKPLRRTLSVYRPLIFPHAPSMRFLTRGRTVNSSASGIAQLASQLSDLTAEAGRRTIYAFSAIRVYGESGFRYFS-----KRVMRSGLVGGL------DSAIKNIDVYGQQDEGSR-----LAHLTDATVQNVVDVVARDGWEHMATTSGVVVHRQYIALGSDGSPIPSSSLETTTGQVGEQAAMTRARARARAIEETL-GAAERDMAVTDDEE--RAPRFACVKATAILSAPPEVVYLLFADNSRVAEYNEHCKEVMDLEILSPDTKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPIEHPAALRSNRYVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAADTRAGAMLVNTLCATSPVCFIRRLDAAAQKLTRELQE 1765
            M  E VA LA T+L ++     G         ++ RR  P   H+           G  PQ+A+DFG+ +P TGRF  QHK G  + ++   E       +C SA +A + A  +  A Q                      R+L+    +      Y +   Q+H+R               ++S    +R++ +  +  D    W   R +  R T+     +I  H                   +  L +QLS+LT E  RR     SA    G  G R        +R  R   + GL      D +  +    G++ E  R     L  LTD  VQNVVDVVARDGWE +    GVVVHRQY+ALG DG+P              + A + +A A + ++   + G+A+    V +D    R P+FACVKA+AILS PPEVVYLLFADNSRV EYNEHC+EV DLE+LS D+KITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVS+P+EHPAA R++RYVRSEILLAGNFMR VPGDPSRTEFLMVTHVNPGGAA+TRAGAMLVN+LC +SPV FIRRL+ AA+KL  ELQ+
Sbjct:    1 MLRERVAILAATLLLLECHSMSGGATGAIPDQQQHRRHVP---HY-----------GCTPQRAQDFGSRYPQTGRFEAQHKRGLVVDDQPAGEEWEEADLECWSATMAAIVASGSTLALQ----------------------RTLKPDEQQSASAEGYGRQ--QRHIRXXXXXXXXXXXXXXXNSSAPRFRRIRAELSANLDA---WRMRR-RRARETIPAAAIVIRQH-------------------LTHLTAQLSELTGEGFRRAERLLSAANASGNVGIRIAGCAELLRRRGRELFLLGLRKRQNPDGSGGDKLGMGKEGEAERRKMRELQLLTDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTP----EAPAAPAAHAQAAGVPKAEAYSASVGGRVEGSADDPAPVGEDSGKFRPPQFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAAKKLMLELQQ 536
[Close]
BLAST of mRNA_H-elongata_contig6254.13824.1 vs. uniprot
Match: D8LAW9_ECTSI (START domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW9_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 2.290e-55
Identity = 118/271 (43.54%), Postives = 154/271 (56.83%), Query Frame = 2 
Query:  983 DATVQNVVDVVARDGWEHMATTSGVVVHRQYIALGSDGSPIPSSSLETTTGQVGEQAAMTRARARARAIEETLGAAERDMAVTDDEERAPRFACVKATAILSAPPEVVYLLFADNSRVAEYNEHCKEVMDLEILSPDTKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPIEHPAALRSNRYVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAADTRAGAMLVNTLCATSPVCFIRRLDAAAQKLTRELQEASAVDFNRVA 1795
            DA+V+ V+ V+  DGWE +   SGVVV R+++                  G V                               DE  A +FACVKA   L A    +Y LF DN RV EYN++CKEV DLE LS DTK++WA + R  PFKARDF T VH+RTL DGT+  ++RP+EHPAA R  +YVR+EIL+A N MR    DPS+T+F+ VTH+NPGG AD+R GA +VN LCA +PV  +  L+ +A       +EA+A    +VA
Sbjct:  252 DASVEAVLAVIESDGWERVTEKSGVVVVRKFVXXXXX---XXXXXXXXXRGIV-------------------------------DEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAPVPKEEAAAAKKQKVA 488
[Close]
BLAST of mRNA_H-elongata_contig6254.13824.1 vs. uniprot
Match: A0A6H5JSI0_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI0_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 2.070e-53
Identity = 101/186 (54.30%), Postives = 127/186 (68.28%), Query Frame = 2 
Query: 1238 EERAPRFACVKATAILSAPPEVVYLLFADNSRVAEYNEHCKEVMDLEILSPDTKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPIEHPAALRSNRYVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAADTRAGAMLVNTLCATSPVCFIRRLDAAAQKLTRELQEASAVDFNRVA 1795
            EE A +FACVKA   L A    +Y LF DN RV EYN++CKEV DLE LS DTK++WA + R  PFKARDF T VH+RTL DGT+  V+RP+EHPAA R  +YVR+EIL+A N MR    DPS+T+F+ VTH+NPGG AD+R GA +VN LCA +PV  +  L+ +A       +E +A     VA
Sbjct:  238 EEAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAPVPREEVAAAKKKNVA 423
[Close]
BLAST of mRNA_H-elongata_contig6254.13824.1 vs. uniprot
Match: I2CRQ3_NANGC (Lipid transfer protein 5-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRQ3_NANGC)

HSP 1 Score: 191 bits (485), Expect = 5.510e-53
Identity = 86/144 (59.72%), Postives = 114/144 (79.17%), Query Frame = 2 
Query: 1253 RFACVKATAILSAPPEVVYLLFADNSRVAEYNEHCKEVMDLEILSPDTKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPIEHPAALRSNRYVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAADTRAGAMLVN 1684
            RFACVKA  ++ AP + V+ LF D++RV EYNEHC+E+ D++ LS +TK+TW+ASGR GPFKARDFCT+VH+R L DG L  V+R  EH  A RS++YVRSEILLAGN MR  P DP++T  + +TH+NPGG+ D++AGA++VN
Sbjct:   16 RFACVKAVGVVDAPVDRVFDLFLDSARVGEYNEHCREIQDIDTLSANTKVTWSASGRYGPFKARDFCTVVHYRRLEDGRLVVVNRAAEHVRAPRSDKYVRSEILLAGNIMRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVN 159
[Close]
BLAST of mRNA_H-elongata_contig6254.13824.1 vs. uniprot
Match: A0A7S2V5A8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5A8_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.060e-52
Identity = 91/176 (51.70%), Postives = 125/176 (71.02%), Query Frame = 2 
Query: 1253 RFACVKATAILSAPPEVVYLLFADNSRVAEYNEHCKEVMDLEILSPDTKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPIEHPAALRSNRYVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAADTRAGAMLVNTLCATSPVCFIRRLDAAAQKLTRELQEASAVD 1780
            +FA +KA   + AP E V+ LF DNSRV EYN+HC E+ DLE + P TK+TW+ASG+ GPFKARDFCTLVHF TL+DGT A VS P  HP A  ++RYVRSE+++AG+FMR  P DP++T F  +T VNPGG A +   A +VN+L    P+ F+++++ AAQ+  ++     ++D
Sbjct:  219 KFAVIKAVGTIDAPIEEVHKLFVDNSRVGEYNDHCHEIKDLEWVGPRTKVTWSASGKYGPFKARDFCTLVHFATLADGTQAIVSVPFNHPQAPATSRYVRSEVIMAGHFMRRDPKDPNKTAFTTITQVNPGGIAGSAGAAKIVNSLSTQGPITFVKKVELAAQQTMKQHSRQHSLD 394
[Close]
BLAST of mRNA_H-elongata_contig6254.13824.1 vs. uniprot
Match: A0A7S2RES9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RES9_9STRA)

HSP 1 Score: 192 bits (487), Expect = 4.850e-51
Identity = 92/169 (54.44%), Postives = 120/169 (71.01%), Query Frame = 2 
Query: 1235 DEERAPRFACVKATAILSAPPEVVYLLFADNSRVAEYNEHCKEVMDLEILSPDTKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPIEHPAALRSNRYVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAADTRAGAMLVNTLCATSPVCFIRRLDAAAQ 1741
            D+  A +F+CVKATAIL+A P  VY LF DNS+V EYNEHC+++ D+E +S DTK+ W+ +   GPFK RDF T+VH+R   DGTL  ++RP  HP      ++ R+E+LLAGN MR V GD S+TEF M+THVNPGG  +   GA +VN +C+  PV FIRRL+ AAQ
Sbjct:  129 DDVAAAKFSCVKATAILNASPHDVYKLFLDNSQVHEYNEHCQKLEDVERVSKDTKVAWSVTAPFGPFKPRDFVTMVHYRREPDGTLMVLNRPCNHPDRPPVPQFQRAELLLAGNVMRPVQGDKSKTEFTMITHVNPGGVVNNALGAAIVNRICSQGPVDFIRRLERAAQ 297
[Close]
BLAST of mRNA_H-elongata_contig6254.13824.1 vs. uniprot
Match: A0A7S0VPD5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VPD5_9CRYP)

HSP 1 Score: 177 bits (449), Expect = 7.780e-48
Identity = 81/138 (58.70%), Postives = 104/138 (75.36%), Query Frame = 2 
Query: 1313 LFADNSRVAEYNEHCKEVMDLEILSPDTKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPIEHPAALRSNRYVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAADTRAGAMLVNTLCATSPVCFIRRL 1726
            LF DN+RV EYNE CK++ DLE  +  TK+TW+AS R+GPFK RDF T VH+RTL+D TL  V+R  +HPAA R++RY+R EI+L GN MRAVPGDP +T F M+THVNPGG A TR G M++N+  A  P+ F++ L
Sbjct:    2 LFVDNTRVREYNEFCKQIRDLEYKNSTTKVTWSASARIGPFKERDFVTRVHYRTLADQTLLVVNRAEDHPAAPRTDRYLRMEIVLGGNVMRAVPGDPQKTSFTMLTHVNPGGVAGTRMGTMIMNSAAANGPISFVQGL 139
[Close]
BLAST of mRNA_H-elongata_contig6254.13824.1 vs. uniprot
Match: A0A7S3UPT8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPT8_HETAK)

HSP 1 Score: 181 bits (460), Expect = 1.280e-46
Identity = 109/271 (40.22%), Postives = 148/271 (54.61%), Query Frame = 2 
Query:  932 IDVYGQQDEGSRLAHLTDATVQNVVDVVARDGWEHMATTSGVVVHRQYIALGSDGSPIPSSSLETTTGQVGEQAAMTRARARARAIEETLGAAERDMAVTDDEERAPRFACVKATAILSAPPEVVYLLFADNSRVAEYNEHCKEVMDLEILSPDTKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPIEHPAALRSN-RYVRSEILLAGNFMRAVPGDP-SRTEFLMVTHVNPGGAADTRAGAMLVNTLCATSPVCFIRRLDAAA 1738
            +D   Q+D    L+ +TD            +GW  +    G+ V +++++ G   S     S   T     EQAA+                          EERA +FA VKA   ++AP   +Y LF DNSRV EYN  C +V DL  LS DTK+TWA S R GP KARDFCT+VH R L DGT   V+RP  H  ALRS+ +Y+RSE+L+AG+ MR    DP ++T+F ++THVN GG  +T   A L+N LCA+SP+  ++ L+ AA
Sbjct:  149 LDAQNQRDVDRLLSEVTDD-----------EGWGLVVERQGIKVWKKFLSPGRHSSLRDGESSSITAYDEQEQAALAAM-----------------------EERAAKFAAVKAAGTINAPASSIYRLFLDNSRVHEYNSLCHKVKDLAYLSEDTKVTWACSPRFGPVKARDFCTVVHCRRLRDGTCVVVNRPAFHRGALRSDPQYIRSELLIAGHVMRPNRKDPENKTDFYVMTHVNLGGICETPPVAALINRLCASSPISLMKNLEKAA 385
[Close]
BLAST of mRNA_H-elongata_contig6254.13824.1 vs. uniprot
Match: A0A7S0QTI7_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QTI7_9CRYP)

HSP 1 Score: 176 bits (447), Expect = 2.100e-46
Identity = 83/161 (51.55%), Postives = 114/161 (70.81%), Query Frame = 2 
Query: 1247 APRFACVKATAILSAPPEVVYLLFADNSRVAEYNEHCKEVMDLEILSPDTKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPIEHP-AALRSNRYVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAADTRAGAMLVNTLCATSPVCFIRRL 1726
            A +F C+KA  +L APP  V+ LF DN+R  EYNE C+E+ D+E +   TK+TW+ASGR+GPFK RDF T VH+R+L DGTL  V+R  + P  A  S+RY+R E+ L G+ +R +PG+P+RT +  + HVNPGG A+TR GAML+N   A+ PV  ++RL
Sbjct:   38 AAKFDCIKAAGVLDAPPAEVFELFIDNARAGEYNEFCRELRDVEFIDNATKVTWSASGRVGPFKERDFVTRVHYRSLPDGTLLVVNRAEDAPLTAASSDRYLRMEMYLGGSVLRPLPGNPNRTIYTTLAHVNPGGVAETRIGAMLMNAAAASGPVKLVQRL 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6254.13824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLJ0_ECTSI2.520e-11742.93START domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5J623_9PHAE3.840e-11643.26START domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LAW9_ECTSI2.290e-5543.54START domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JSI0_9PHAE2.070e-5354.30START domain-containing protein n=1 Tax=Ectocarpus... [more]
I2CRQ3_NANGC5.510e-5359.72Lipid transfer protein 5-like protein (Fragment) n... [more]
A0A7S2V5A8_9STRA1.060e-5251.70Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2RES9_9STRA4.850e-5154.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0VPD5_9CRYP7.780e-4858.70Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S3UPT8_HETAK1.280e-4640.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0QTI7_9CRYP2.100e-4651.55Hypothetical protein (Fragment) n=2 Tax=Cryptomona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6254contigH-elongata_contig6254:2..3584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue4.3e-27
Seed eggNOG ortholog2880.D7G2E9
KEGG koko:K10779
EggNOG free text desc.lipid binding
EggNOG OGsKOG2761@1,KOG2761@2759
EC3.6.4.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03000,ko03036
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSTART domain
Ec32 orthologEc-22_001140.1
Exons2
Model size2564
Cds size1818
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6254.13824.1prot_H-elongata_contig6254.13824.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6254 705..3541 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931007.9494762-UTR-H-elongata_contig6254:1..7041622931007.9494762-UTR-H-elongata_contig6254:1..704Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6254 2..704 -
1691679660.113815-UTR-H-elongata_contig6254:1..7041691679660.113815-UTR-H-elongata_contig6254:1..704Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6254 2..704 -
1622931008.0062122-UTR-H-elongata_contig6254:3541..35841622931008.0062122-UTR-H-elongata_contig6254:3541..3584Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6254 3542..3584 -
1691679660.1651065-UTR-H-elongata_contig6254:3541..35841691679660.1651065-UTR-H-elongata_contig6254:3541..3584Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6254 3542..3584 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931007.9688046-CDS-H-elongata_contig6254:704..11271622931007.9688046-CDS-H-elongata_contig6254:704..1127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6254 705..1127 -
1691679660.1336443-CDS-H-elongata_contig6254:704..11271691679660.1336443-CDS-H-elongata_contig6254:704..1127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6254 705..1127 -
1622931007.9872186-CDS-H-elongata_contig6254:2146..35411622931007.9872186-CDS-H-elongata_contig6254:2146..3541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6254 2147..3541 -
1691679660.1522417-CDS-H-elongata_contig6254:2146..35411691679660.1522417-CDS-H-elongata_contig6254:2146..3541Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6254 2147..3541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6254.13824.1

>prot_H-elongata_contig6254.13824.1 ID=prot_H-elongata_contig6254.13824.1|Name=mRNA_H-elongata_contig6254.13824.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=606bp
MHMEVVATLATTILFIKWIPGEGTLMPVTDPPKRGRRRRPWGQHHSPPST
FVLTFSGQRPQKAEDFGNHFPHTGRFCPQHKMGRKLVEEGGDEPQCLSAA
LAVLTALTTETASQNIPQASPPPSPFHLGGTGLYDWRSLRATISRKNWLR
SYQQPLTQQHVRRSPRTHQDGDQSVEWSASPLQRLKVQALSKKDIITRWT
SERCKPLRRTLSVYRPLIFPHAPSMRFLTRGRTVNSSASGIAQLASQLSD
LTAEAGRRTIYAFSAIRVYGESGFRYFSKRVMRSGLVGGLDSAIKNIDVY
GQQDEGSRLAHLTDATVQNVVDVVARDGWEHMATTSGVVVHRQYIALGSD
GSPIPSSSLETTTGQVGEQAAMTRARARARAIEETLGAAERDMAVTDDEE
RAPRFACVKATAILSAPPEVVYLLFADNSRVAEYNEHCKEVMDLEILSPD
TKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPIEHPAALRSNR
YVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAADTRAGAMLVNTLC
ATSPVCFIRRLDAAAQKLTRELQEASAVDFNRVADSRAPSSMLPPSERAI
SGGIS*
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mRNA from alignment at H-elongata_contig6254:2..3584-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6254.13824.1 ID=mRNA_H-elongata_contig6254.13824.1|Name=mRNA_H-elongata_contig6254.13824.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3583bp|location=Sequence derived from alignment at H-elongata_contig6254:2..3584- (Himanthalia elongata Himel1 dioecious)
GCCATACTACCGAGCCTTACCGCCAGATAAAAGTGAATTCCATATGCATA
TGGAGGTCGTGGCCACCCTGGCCACAACAATCCTCTTCATCAAGTGGATT
CCTGGCGAAGGAACGTTGATGCCTGTGACGGACCCACCCAAGCGCGGAAG
ACGTAGGCGCCCCTGGGGGCAGCATCATTCACCTCCCTCGACATTTGTCC
TTACATTCAGCGGCCAGCGGCCCCAGAAGGCCGAGGACTTTGGAAATCAC
TTTCCGCACACGGGGAGGTTCTGCCCTCAACACAAGATGGGGAGGAAGTT
GGTGGAGGAGGGCGGTGACGAGCCCCAATGCTTGAGCGCAGCCTTGGCAG
TGCTGACAGCGTTGACCACTGAAACCGCCAGTCAGAATATTCCACAAGCT
TCTCCCCCTCCATCTCCTTTCCATCTCGGAGGAACAGGATTATACGACTG
GCGATCATTGAGAGCCACAATTTCTCGGAAGAATTGGTTACGTTCGTATC
AGCAGCCGCTGACACAGCAGCATGTGCGACGCAGTCCCCGAACACATCAG
GACGGCGACCAGTCTGTAGAATGGTCAGCATCTCCTTTACAAAGGCTGAA
AGTCCAGGCGTTATCCAAGAAGGATATCATAACGAGATGGACCAGCGAGC
GATGCAAACCCTTACGAAGAACTTTGTCGGTGTATCGACCGCTCATTTTC
CCCCACGCACCGTCGATGCGTTTCTTGACACGAGGTCGCACGGTCAATTC
CTCCGCGAGCGGGATCGCGCAGTTGGCCTCCCAGCTATCGGATCTGACGG
CCGAAGCCGGGCGACGCACGATATACGCATTCTCCGCCATTCGCGTGTAC
GGCGAGTCCGGTTTCCGATACTTTTCTAAGCGCGTCATGCGCAGTGGGCT
GGTGGGAGGACTCGACTCCGCGATCAAAAATATAGACGTATATGGACAAC
AAGATGAGGGATCGAGGTTAGCCCACCTAACGGACGCAACAGTCCAGAAC
GTCGTGGACGTCGTTGCTAGAGACGGTTGGGAACACATGGCCACGACGAG
CGGAGTCGTCGTGCATCGGCAATACATCGCGCTCGGCTCCGATGGGTCGC
CGATTCCATCGTCGTCTTTGGAGACAACAACAGGGCAGGTAGGGGAGCAA
GCGGCGATGACGAGGGCGAGGGCGAGGGCGAGGGCGATCGAGGAAACACT
GGGTGCAGCCGAAAGGGATATGGCGGTCACCGATGACGAAGAAAGAGCGC
CGCGATTTGCGTGCGTGAAGGCCACCGCGATCCTGTCTGCTCCGCCGGAG
GTCGTCTATTTGTTGTTTGCGGACAATTCTCGCGTTGCCGAGTATAATGA
GCACTGCAAGGAGGTGATGGACCTGGAGATTTTATCTCCGGATACCAAGA
TAACGTGGGCCGCGAGCGGGCGAATGGGCCCTTTCAAGGTTAGCACGCCT
CGATGATGGGAATGGGGTGTGGGGGTGTGGGGTCGTTACGTATCTATAAT
GGCGAGTTTTTAATGTTGGTGAGTGAGTGCGCTTTTAAAAAACCTATTAC
TGGTAATCCCGGAATTTTGACGTAATAGCAGCGGCAAGTTAAAAACATAT
TGATCAATGGCGACGTCGTTCGCGCTCGCACATGTATGTATGTATGTATG
CATGGTCATCACGTATAGCAGAGTAAGATCAACCGGATTTGGTTGCCTTC
TGCTCGTGGTCAGCTGAACGCCTCCTTACGTACGTGTCATGCCGGTTTAA
GGTTTAATGTAAATTAATAAAAAGGGAAAATAGTTTTCCCCTGTCCCCGT
TCGCGCCTGAGAATTTGGTCTCGCGAGATGGGTTCAGCAGTCACGTCCCG
CGTTAGCCTGCTCATTCTCCCAACCCAGGCTGAATCTGGTGCGTACTCCC
GGGATTCTCTCGATCCTCTCGTTTTCCGCGACGGTGTCCATCTCTACCAT
CAACCGCCATCGGACCAATTCCGATTGGATCAGGTCACGCAATTGCGTAC
CGATAGCGTTTACTAGCGAGAGTCCGCCGGCACTGAGCCAGCAGTCCTCA
AGGTAGCTTGACTAACTGGTGCAGCCTACTGAGGTAACCCCATGGACCAT
TTTTTGTACGCCTCTATTTTCCCACACCCACTATGGGTAGAGTGGGCATG
ACGGTTTGCATAAGCTGCGATTGAAGAGATCATGGTCCCATATGAAGTAA
CGGAAATTCAACGCACGATGACAGCAACGCTTGATTGCTGTGCGCCGTAG
TTCATATCGAGGCGGTGGCTCTAGCAGCAAGAACCGTCACTTTTCTATAG
TATCCTCAACCACACCAAGCTGTAATATACTGGTGATATAAAGCAACAGG
CAACGATCTAACACCCCAGACATCAATGCTGGTTACTCTGGTTGTAAATA
ATCGCCCTCTTCCCCCCCCCCCCCCAACCCTCATCGCGCCGTCGCCGCCA
TTACTAGGCTCGAGATTTCTGTACGCTAGTGCACTTTAGGACCCTTAGCG
ACGGTACGCTGGCGCAAGTATCTCGTCCTATTGAGCATCCCGCCGCGCTA
CGATCGAACCGTTACGTCCGCAGCGAGATCCTTCTTGCTGGTAACTTCAT
GCGCGCGGTCCCCGGAGACCCGTCCCGAACAGAATTTCTGATGGTGACGC
ACGTCAACCCTGGGGGCGCGGCAGATACACGCGCCGGGGCTATGCTTGTG
AACACTCTTTGCGCGACCTCGCCAGTATGCTTTATCCGGAGGCTGGATGC
AGCTGCGCAGAAATTAACGCGAGAGCTCCAGGAGGCCTCGGCGGTGGATT
TTAATCGTGTGGCAGATTCAAGGGCACCATCCTCTATGTTGCCGCCCTCT
GAAAGGGCGATTTCAGGAGGAATTTCTTAGAATATAGACGATGGGCGACG
TAAAGGCGTTAGCCCCTGACGCGGTCGCGTAACGCGATGGGGGTAGATAT
CGGGTGAAGCGGTGAGGACCGCAGAGTTTGGGCATGTATACCCTCTCGTT
TTACATCTTAGACCGCAAGCTTTTTTGGGGGTGCGAGCGGTGCTAGCGAT
CGCGTGTCAGTTTTGCGAGGGTTTTGCTATGTCTTCCCTCCTGTTTCCGT
TTGTGTGTTCATTTTCGCCTTAAAAAAACAAGATACCGTCGCGCCCGACA
CGCAGGTAATCGGCATGTCTGGAAGGCCAGAGAACGGACGGAGCTTCCTG
CTGCACTTGTGTGCCATCCTGCCGCCGTTTTTTTTTTGATGCGGCGATTG
TAGTGTTCCTGCACCCGAAATTTAGAGTTCAATCTTGTGGTACCTTTCGT
ACTTGAGTGTGTCAACATCGGGTTCACTCGTGGATCGTTTTATGCCACGA
ACATGTGGGATCCCCCGGACTGTTATCTCGGAGCCGGGGGGGCGGGGGCG
GCTGATCCGTACGCGTGCCGGAGGTAAGTTATCGGTGCCGCTCCTACAAA
AACACATGCACACCAATTTCGTTGGAACTTATTTCAGGCCTGGCCGCTCG
TTTCAACGCGATTCATGTTTTAAGTAGCTGATAATTTTAAGAGGTCGTGC
TGCTGAGAATATAAAGTATCTATGTACTTAGTT
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Coding sequence (CDS) from alignment at H-elongata_contig6254:2..3584-

>mRNA_H-elongata_contig6254.13824.1 ID=mRNA_H-elongata_contig6254.13824.1|Name=mRNA_H-elongata_contig6254.13824.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3636bp|location=Sequence derived from alignment at H-elongata_contig6254:2..3584- (Himanthalia elongata Himel1 dioecious)
ATGCATATGGAGGTCGTGGCCACCCTGGCCACAACAATCCTCTTCATCAA
GTGGATTCCTGGCGAAGGAACGTTGATGCCTGTGACGGACCCACCCAAGC
GCGGAAGACGTAGGCGCCCCTGGGGGCAGCATCATTCACCTCCCTCGACA
TTTGTCCTTACATTCAGCGGCCAGCGGCCCCAGAAGGCCGAGGACTTTGG
AAATCACTTTCCGCACACGGGGAGGTTCTGCCCTCAACACAAGATGGGGA
GGAAGTTGGTGGAGGAGGGCGGTGACGAGCCCCAATGCTTGAGCGCAGCC
TTGGCAGTGCTGACAGCGTTGACCACTGAAACCGCCAGTCAGAATATTCC
ACAAGCTTCTCCCCCTCCATCTCCTTTCCATCTCGGAGGAACAGGATTAT
ACGACTGGCGATCATTGAGAGCCACAATTTCTCGGAAGAATTGGTTACGT
TCGTATCAGCAGCCGCTGACACAGCAGCATGTGCGACGCAGTCCCCGAAC
ACATCAGGACGGCGACCAGTCTGTAGAATGGTCAGCATCTCCTTTACAAA
GGCTGAAAGTCCAGGCGTTATCCAAGAAGGATATCATAACGAGATGGACC
AGCGAGCGATGCAAACCCTTACGAAGAACTTTGTCGGTGTATCGACCGCT
CATTTTCCCCCACGCACCGTCGATGCGTTTCTTGACACGAGGTCGCACGG
TCAATTCCTCCGCGAGCGGGATCGCGCAGTTGGCCTCCCAGCTATCGGAT
CTGACGGCCGAAGCCGGGCGACGCACGATATACGCATTCTCCGCCATTCG
CGTGTACGGCGAGTCCGGTTTCCGATACTTTTCTAAGCGCGTCATGCGCA
GTGGGCTGGTGGGAGGACTCGACTCCGCGATCAAAAATATAGACGTATAT
GGACAACAAGATGAGGGATCGAGGTTAGCCCACCTAACGGACGCAACAGT
CCAGAACGTCGTGGACGTCGTTGCTAGAGACGGTTGGGAACACATGGCCA
CGACGAGCGGAGTCGTCGTGCATCGGCAATACATCGCGCTCGGCTCCGAT
GGGTCGCCGATTCCATCGTCGTCTTTGGAGACAACAACAGGGCAGGTAGG
GGAGCAAGCGGCGATGACGAGGGCGAGGGCGAGGGCGAGGGCGATCGAGG
AAACACTGGGTGCAGCCGAAAGGGATATGGCGGTCACCGATGACGAAGAA
AGAGCGCCGCGATTTGCGTGCGTGAAGGCCACCGCGATCCTGTCTGCTCC
GCCGGAGGTCGTCTATTTGTTGTTTGCGGACAATTCTCGCGTTGCCGAGT
ATAATGAGCACTGCAAGGAGGTGATGGACCTGGAGATTTTATCTCCGGAT
ACCAAGATAACGTGGGCCGCGAGCGGGCGAATGGGCCCTTTCAAGATGCA
TATGGAGGTCGTGGCCACCCTGGCCACAACAATCCTCTTCATCAAGTGGA
TTCCTGGCGAAGGAACGTTGATGCCTGTGACGGACCCACCCAAGCGCGGA
AGACGTAGGCGCCCCTGGGGGCAGCATCATTCACCTCCCTCGACATTTGT
CCTTACATTCAGCGGCCAGCGGCCCCAGAAGGCCGAGGACTTTGGAAATC
ACTTTCCGCACACGGGGAGGTTCTGCCCTCAACACAAGATGGGGAGGAAG
TTGGTGGAGGAGGGCGGTGACGAGCCCCAATGCTTGAGCGCAGCCTTGGC
AGTGCTGACAGCGTTGACCACTGAAACCGCCAGTCAGAATATTCCACAAG
CTTCTCCCCCTCCATCTCCTTTCCATCTCGGAGGAACAGGATTATACGAC
TGGCGATCATTGAGAGCCACAATTTCTCGGAAGAATTGGTTACGTTCGTA
TCAGCAGCCGCTGACACAGCAGCATGTGCGACGCAGTCCCCGAACACATC
AGGACGGCGACCAGTCTGTAGAATGGTCAGCATCTCCTTTACAAAGGCTG
AAAGTCCAGGCGTTATCCAAGAAGGATATCATAACGAGATGGACCAGCGA
GCGATGCAAACCCTTACGAAGAACTTTGTCGGTGTATCGACCGCTCATTT
TCCCCCACGCACCGTCGATGCGTTTCTTGACACGAGGTCGCACGGTCAAT
TCCTCCGCGAGCGGGATCGCGCAGTTGGCCTCCCAGCTATCGGATCTGAC
GGCCGAAGCCGGGCGACGCACGATATACGCATTCTCCGCCATTCGCGTGT
ACGGCGAGTCCGGTTTCCGATACTTTTCTAAGCGCGTCATGCGCAGTGGG
CTGGTGGGAGGACTCGACTCCGCGATCAAAAATATAGACGTATATGGACA
ACAAGATGAGGGATCGAGGTTAGCCCACCTAACGGACGCAACAGTCCAGA
ACGTCGTGGACGTCGTTGCTAGAGACGGTTGGGAACACATGGCCACGACG
AGCGGAGTCGTCGTGCATCGGCAATACATCGCGCTCGGCTCCGATGGGTC
GCCGATTCCATCGTCGTCTTTGGAGACAACAACAGGGCAGGTAGGGGAGC
AAGCGGCGATGACGAGGGCGAGGGCGAGGGCGAGGGCGATCGAGGAAACA
CTGGGTGCAGCCGAAAGGGATATGGCGGTCACCGATGACGAAGAAAGAGC
GCCGCGATTTGCGTGCGTGAAGGCCACCGCGATCCTGTCTGCTCCGCCGG
AGGTCGTCTATTTGTTGTTTGCGGACAATTCTCGCGTTGCCGAGTATAAT
GAGCACTGCAAGGAGGTGATGGACCTGGAGATTTTATCTCCGGATACCAA
GATAACGTGGGCCGCGAGCGGGCGAATGGGCCCTTTCAAGGCTCGAGATT
TCTGTACGCTAGTGCACTTTAGGACCCTTAGCGACGGTACGCTGGCGCAA
GTATCTCGTCCTATTGAGCATCCCGCCGCGCTACGATCGAACCGTTACGT
CCGCAGCGAGATCCTTCTTGCTGGTAACTTCATGCGCGCGGTCCCCGGAG
ACCCGTCCCGAACAGAATTTCTGATGGTGACGCACGTCAACCCTGGGGGC
GCGGCAGATACACGCGCCGGGGCTATGCTTGTGAACACTCTTTGCGCGAC
CTCGCCAGTATGCTTTATCCGGAGGCTGGATGCAGCTGCGCAGAAATTAA
CGCGAGAGCTCCAGGAGGCCTCGGCGGTGGATTTTAATCGTGTGGCAGAT
TCAAGGGCACCATCCTCTATGTTGCCGCCCTCTGAAAGGGCGATTTCAGG
AGGAATTTCTTAGGCTCGAGATTTCTGTACGCTAGTGCACTTTAGGACCC
TTAGCGACGGTACGCTGGCGCAAGTATCTCGTCCTATTGAGCATCCCGCC
GCGCTACGATCGAACCGTTACGTCCGCAGCGAGATCCTTCTTGCTGGTAA
CTTCATGCGCGCGGTCCCCGGAGACCCGTCCCGAACAGAATTTCTGATGG
TGACGCACGTCAACCCTGGGGGCGCGGCAGATACACGCGCCGGGGCTATG
CTTGTGAACACTCTTTGCGCGACCTCGCCAGTATGCTTTATCCGGAGGCT
GGATGCAGCTGCGCAGAAATTAACGCGAGAGCTCCAGGAGGCCTCGGCGG
TGGATTTTAATCGTGTGGCAGATTCAAGGGCACCATCCTCTATGTTGCCG
CCCTCTGAAAGGGCGATTTCAGGAGGAATTTCTTAG
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