mRNA_H-elongata_contig117779.1382.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig117779.1382.1 vs. uniprot
Match: D7FKB2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB2_ECTSI) HSP 1 Score: 184 bits (468), Expect = 2.050e-53 Identity = 87/103 (84.47%), Postives = 98/103 (95.15%), Query Frame = 3
Query: 3 DASSGHPLEAVHRSRVANEFEFKMDMARKVYGSAFVMRMKTEVATLSQAQRLPGLPSSMLGLETVLGRDETVEFEDYLDPPAERPSGPRFEVHQAMEIQYGLL 311
DAS+GHPLEA++++R+ NEF+FKMD+A KVYGSAFVMRMKTEVATLSQAQ LPGLPSSMLGLETVLGRDETVEFEDYLDPPA+RP GPRF VH+AMEIQYGL+
Sbjct: 29 DASAGHPLEAMNKARIPNEFDFKMDLAGKVYGSAFVMRMKTEVATLSQAQHLPGLPSSMLGLETVLGRDETVEFEDYLDPPADRPEGPRFRVHEAMEIQYGLM 131
BLAST of mRNA_H-elongata_contig117779.1382.1 vs. uniprot
Match: A0A835YZL3_9STRA (Proteasome maturation factor UMP1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZL3_9STRA) HSP 1 Score: 142 bits (358), Expect = 2.710e-37 Identity = 66/103 (64.08%), Postives = 83/103 (80.58%), Query Frame = 3
Query: 3 DASSGHPLEAVHRSRVANEFEFKMDMARKVYGSAFVMRMKTEVATLSQAQRLPGLPSSMLGLETVLGRDETVEFEDYLDPPAERPSGPRFEVHQAMEIQYGLL 311
+A HP+EA+ RSRV EFE KMDMA++VYGS F MR++TE A LSQAQRLPGL SS +GLETVLG DET++FED++ P +P P+F+VH+AMEI+YGLL
Sbjct: 26 EAQDTHPVEAIQRSRVRGEFELKMDMAQRVYGSGFAMRLRTEAAALSQAQRLPGLLSSRVGLETVLGNDETLDFEDFMGTPENQPGEPKFKVHEAMEIKYGLL 128
BLAST of mRNA_H-elongata_contig117779.1382.1 vs. uniprot
Match: W7TNF3_9STRA (Proteasome maturation factor ump1 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNF3_9STRA) HSP 1 Score: 105 bits (261), Expect = 2.240e-23 Identity = 52/102 (50.98%), Postives = 69/102 (67.65%), Query Frame = 3
Query: 3 DASSGHPLEAVHRSRVANEFEFKMDMARKVYGSAFVMRMKTEVATLSQAQRLPGLPSSMLGLETVLGRDETVEFEDYLDPPAERPSGPRFEVHQAMEIQYGL 308
+A + HP++A +R EF+ ++D ++YG A MR+KTE LS+ R PGLPSSM+GLETVLG DET+EFED L+ P ERP P VH+ ME + GL
Sbjct: 31 EAVAPHPVQAFQATRKEAEFQARLDTIARLYGIAAAMRLKTERDILSRVCRAPGLPSSMVGLETVLGTDETIEFEDVLNDPQERPDMPLIPVHERMEARLGL 132
BLAST of mRNA_H-elongata_contig117779.1382.1 vs. uniprot
Match: A0A6U4HD01_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HD01_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 9.090e-20 Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = 3
Query: 18 HPLEAVHRSRVANEFEFKMDMARKVYGSAFVMRMKTEVATLSQAQRLPGLPSSMLGLETVLGRDETVEFEDYLDPPAERPSGPRFEVHQAMEIQYGLL 311
HP+E + R ++E K+DM R +YG+ M +KTEV S RLPGL S +GL+TVL D V FED L RP P+F++H AMEI++GLL
Sbjct: 34 HPVEEFQQIRASSELAGKVDMVRSIYGTGAAMGLKTEVQAFSADTRLPGLAQSRVGLDTVLNNDVKVGFEDVLGQEEHRPEPPKFQLHNAMEIKFGLL 131
BLAST of mRNA_H-elongata_contig117779.1382.1 vs. uniprot
Match: A0A7S2S4B2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4B2_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.090e-19 Identity = 49/103 (47.57%), Postives = 69/103 (66.99%), Query Frame = 3
Query: 3 DASSGHPLEAVHRSRVA-NEFEFKMDMARKVYGSAFVMRMKTEVATLSQAQRLPGLPSSMLGLETVLGRDETVEFEDYLDPPAERPSGPRFEVHQAMEIQYGL 308
++ GHPLE +R+A ++F K+DM R++YGSA MR++TE Q QRLPGLPSS L L+TVLG D T++FED L+ P E P + +H +E ++GL
Sbjct: 28 ESRQGHPLE----TRLAVDDFSQKVDMVRRMYGSAAAMRLQTERLATEQIQRLPGLPSSFLALQTVLGEDCTLQFEDVLNDPFEAPVETKASLHDELEFKFGL 126
BLAST of mRNA_H-elongata_contig117779.1382.1 vs. uniprot
Match: A0A8K1CUT3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUT3_PYTOL) HSP 1 Score: 92.8 bits (229), Expect = 5.490e-19 Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 3
Query: 3 DASSGHPLEAVHRSRVANEFEFKMDMARKVYGSAFVMRMKTEVATLSQAQRLPGLPSSMLGLETVLGRDETVEFEDYLDPPAERPSGPRFEVHQAMEIQYGLL 311
D HP++ + N+FE KM +VYG A MR++TE A + Q RLPGLPSS +GL+TV G DE + F D+L+ P E P F VH+AME++ +
Sbjct: 26 DVRPVHPVQQLQTMHRRNQFELKMATVEQVYGKAAAMRLRTEKAVMEQFGRLPGLPSSRIGLDTVTGADEELNFSDFLNDPNEHPEH-NFRVHEAMEVKLSIF 127
BLAST of mRNA_H-elongata_contig117779.1382.1 vs. uniprot
Match: A0A7S4MDZ2_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MDZ2_9EUKA) HSP 1 Score: 93.6 bits (231), Expect = 8.020e-19 Identity = 50/101 (49.50%), Postives = 64/101 (63.37%), Query Frame = 3
Query: 6 ASSGHPLEAVHRSRVANEFEFKMDMARKVYGSAFVMRMKTEVATLSQAQRLPGLPSSMLGLETVLGRDETVEFEDYLDPPAERPSGPRFEVHQAMEIQYGL 308
A S HP+E + R+ + N E K M ++YG M+++ E LSQAQRLPGLP+S LGLET+LGRDET+EFEDYL P R S + ME + GL
Sbjct: 35 APSAHPVEDIQRNWLRNSIETKHFMLGQMYGKHLPMQLRMETQILSQAQRLPGLPNSNLGLETILGRDETIEFEDYLGDP--RMSEHTVDTRAVMEKRLGL 133
BLAST of mRNA_H-elongata_contig117779.1382.1 vs. uniprot
Match: A0A024ULP6_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024ULP6_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.010e-18 Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 3
Query: 3 DASSGHPLEAVHRSRVANEFEFKMDMARKVYGSAFVMRMKTEVATLSQAQRLPGLPSSMLGLETVLGRDETVEFEDYLDPPAERPSGPRFEVHQAMEIQYGLL 311
D H ++ + R FE KM ++YG A MR++TE L Q RLPGLPSS GL+TVLG D+T++F D L+ P + P P+F VH ME++ +
Sbjct: 26 DTRPVHEVQRLETHRRLRGFEGKMRSVEQIYGKAAAMRLRTEKILLEQHTRLPGLPSSRCGLDTVLGNDDTLDFTDILNDPQDSPEAPQFRVHDVMEVKLAIF 128
BLAST of mRNA_H-elongata_contig117779.1382.1 vs. uniprot
Match: H3GHF6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GHF6_PHYRM) HSP 1 Score: 89.0 bits (219), Expect = 1.950e-17 Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 3
Query: 3 DASSGHPLEAVHRSRVANEFEFKMDMARKVYGSAFVMRMKTEVATLSQAQRLPGLPSSMLGLETVLGRDETVEFEDYLDPPAERPSGPRFEVHQAMEIQYGLL 311
D H ++ + + N +E KM +VYG A MR++TE A L Q RLPGLPSS GL+T+ G DE +EF D+L+ P E P F VH+AME++ +
Sbjct: 41 DVRPVHEVQRLQTTHRQNNWELKMATVEQVYGKAAAMRLRTEKAVLEQFTRLPGLPSSHAGLDTLTGADEQIEFTDFLNDPDEHPENT-FRVHEAMEVKLSIF 142
BLAST of mRNA_H-elongata_contig117779.1382.1 vs. uniprot
Match: A0A067CYH8_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYH8_SAPPC) HSP 1 Score: 88.2 bits (217), Expect = 2.460e-17 Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = 3
Query: 3 DASSGHPLEAVHRSRVANEFEFKMDMARKVYGSAFVMRMKTEVATLSQAQRLPGLPSSMLGLETVLGRDETVEFEDYLDPPAERPSGPRFEVHQAMEIQYGLL 311
DA H ++ + R + FE KM+ ++YG A MR++TE L Q RLPGLPSS +GL+T++G D+T++F D L+ P E P F VH AME++ +
Sbjct: 26 DARPVHEVQRLEMHRRVHGFEAKMNSVEQIYGKAAAMRLRTEKIMLEQHVRLPGLPSSRVGLDTLMGNDDTLDFADILNEPQENPE-VHFRVHDAMEVKLAIF 127 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117779.1382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig117779.1382.1 >prot_H-elongata_contig117779.1382.1 ID=prot_H-elongata_contig117779.1382.1|Name=mRNA_H-elongata_contig117779.1382.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp MDMARKVYGSAFVMRMKTEVATLSQAQRLPGLPSSMLGLETVLGRDETVEback to top mRNA from alignment at H-elongata_contig117779:306..1994- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig117779.1382.1 ID=mRNA_H-elongata_contig117779.1382.1|Name=mRNA_H-elongata_contig117779.1382.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1689bp|location=Sequence derived from alignment at H-elongata_contig117779:306..1994- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig117779:306..1994- >mRNA_H-elongata_contig117779.1382.1 ID=mRNA_H-elongata_contig117779.1382.1|Name=mRNA_H-elongata_contig117779.1382.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig117779:306..1994- (Himanthalia elongata Himel1 dioecious)back to top |