mRNA_H-elongata_contig62445.13817.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62445.13817.1
Unique NamemRNA_H-elongata_contig62445.13817.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: D7FJ10_ECTSI (VPS37 C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ10_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 5.520e-103
Identity = 182/310 (58.71%), Postives = 217/310 (70.00%), Query Frame = 1
Query:   31 VLQLLSQVSHPWVNQYMQVVGHPNLHGWDATDPPMIGDIVAAVILEFGRDAPTGSSSGRGQDPPPSWGNEVRATGYTTPPQA--------PMGLAGGGLHIGMTDVEGVRHGHTESSNVQDISNSGRGRKIVPVKGPRRQDHTPIPSIPTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSKQESARILREQGEQMRLELKALQTSYEGKAHERNKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLAAKIECMKRDIRF 936
            VLQLLS V+HPWVN YMQVVGHP+LHGWD T+PP+IGDIVAAVI EFGR     ++SGR Q     WG  +      TPP          P+    G    G    +G  H    S++ +        R   PV       HTPIP IP  F  L+ L+T++L RLL D+SARQALLL M +V  MKDL+T+V KGNVETAR TL+KQ++A +LRE+GE+++ ELKALQTSYE KAH   KNMGGTADQ+ILK+VK+ASK+ADTSSE +A DFLEKR+P QDFL+EFLKERQRYHMLAAKIECMKRDIRF
Sbjct:   75 VLQLLSPVTHPWVNTYMQVVGHPDLHGWDGTNPPLIGDIVAAVIQEFGRSNGGVTTSGRVQAST-VWGGPIAQEPSGTPPAVGAFGLGNPPVSYPAGRATGGAASAKGKAH--MTSTDPRTGGEVQTRRMRPPVH------HTPIPDIPDTFGELQGLSTEKLNRLLGDESARQALLLGMTNVVRMKDLRTDVRKGNVETARLTLAKQDAASVLREEGEKIKAELKALQTSYEDKAHGGGKNMGGTADQMILKRVKHASKMADTSSEQVATDFLEKRVPTQDFLDEFLKERQRYHMLAAKIECMKRDIRF 375          
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: A0A835YJX2_9STRA (VPS37 C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJX2_9STRA)

HSP 1 Score: 148 bits (373), Expect = 8.950e-38
Identity = 116/338 (34.32%), Postives = 166/338 (49.11%), Query Frame = 1
Query:   31 VLQLLSQVSHPWVNQYMQVVGHPNLHGWDATDPPMIGDIVAAVILEFGRDAPTGSSSGRG--------------------------QDPPPSWGNEVRATGYTTPPQAPMGLAGGGLHIGM--------TDVEGVRHGHTESSNVQDISNSGRGRKIVPVKGPRRQDHTPIPSIPTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSKQESARILREQGEQMRLELKALQTSYEGKA--HERNKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLAAKIECMKRDIRF 936
            VLQLLS V HPWVN+YMQVVGHP+L  W       I  IV  +++E      T S++G+                           Q   PSW  + R   +T PP+ P+G A G              +   G R G   +        +G G      K    +  TPIP+IP++F  L+ LT  QL RL  D  A   ++  M S  GM++L  ++ KGN E A++ +   ES+R L    +++R E+ AL+      A  +      G +AD V LK VK A+K AD SS+++A+ FL  R    +FLE F+ +RQRYH  AA++EC+KR++ F
Sbjct:   88 VLQLLSTVDHPWVNEYMQVVGHPDLALWRGNAGKPISVIVKEIMIEL--SGGTASTAGQALPQQPSQRMPTNAASFAHPSTGPQQWQQQQPSWRPDERKPNWT-PPEGPIGAANGNSGGQFWRPQPSDGSQSGGGRVGGGAAQWSPSQVGAGGGGSSTDAKRVEEKHRTPIPAIPSRFAELDGLTEAQLRRLAGDGVALAQIVDGMASARGMRELLRDLAKGNAEVAKANM---ESSRKL----DELRDEITALKMELHEAAALNPVGVGAGASADHVTLKAVKEAAKDADQSSQAVADSFLAGRAGVGEFLEGFMAQRQRYHRCAARMECVKREMGF 415          
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: A0A7S2C1W9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1W9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.220e-17
Identity = 53/160 (33.12%), Postives = 96/160 (60.00%), Query Frame = 1
Query:  436 PIPSIPTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSKQESARILREQGEQMRLELKALQTSYEGKAHER-NKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLAAKIE 912
            P+P IP +F+ +E +T  Q+ RLL DD A  A L+ M SV  M+DL+ +V + N + A+STL  ++   +LR +   ++LEL+ L+ +++ KA  + N +   ++D  +L  ++ A +VA+  S+ +A++F    + A  F++++L  R  YH   A +E
Sbjct:   60 PVPPIPDRFEEIEAMTLDQVERLLRDDVAFSAHLMNMDSVKTMRDLREQVIEENAKIAQSTLQHRDELEVLRAETLTLQLELQQLKEAFDAKAQVQINADAHRSSDNAVLNTIRLAVEVAEEESDDVASEFNNGDMTADAFVKKYLPLRSTYHQRNAALE 219          
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: A0A6G0X4B8_9STRA (VPS37 C-terminal domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4B8_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.020e-15
Identity = 79/301 (26.25%), Postives = 132/301 (43.85%), Query Frame = 1
Query:   31 VLQLLSQVSHPWVNQYMQVVGHPNLHGWDATDPPMIGDIVAAVILEFGRDAPTGSSSGRGQDPPPSWGNEVRATGYTT-----PPQAPMGLAGGGLHIGMTDVEGVRHGHTESSNVQDISNSGRGRKIVPVKGPRRQ--DHTPIPSIPTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSKQESARILREQGEQMRLELKALQTSYEGKAHERNKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLAAKIE 912
            V+Q  S+V H W++   +VVGH +L  W A     IG IV+ ++ EF R  P           P    N  R +   +     PPQA                   + G+  S+  Q  S              +R+   HT  P+IP  F  L+ L+  QL +L+ D +  +A +  M SV     L  ++ +GN E A S L+ + S   L+ + E+++ +L   Q     K  ++N+ M     + ++ +V  A+  AD +SE +A+ F    +    F+ EF   R+ +H+  AK++
Sbjct:   62 VIQTTSRVQHSWLDSQCRVVGHIDLTSWSAHAD--IGRIVSDIVTEFQRSPPVPIGRAATTPTPMYPDNSARPSSIPSYMQPFPPQASTYP----XXXXXXXXXAAQAGYNGSAYQQPPSVQMXXXXXXXXXXXKRETVSHTQAPAIPAVFPELDQLSVNQLEKLVTDRATLKAYIKNMDSVVNFMKLYDDLVEGNQELADSNLAHESSISSLQVEIEELKHQLHTAQEGLNVKLAKQNELMTQFQPEPLVARVVDAADEADEASEEIASRFANGEIDVSQFVAEFQPIRKLFHLRTAKVD 356          
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: A0A2P6MT56_9EUKA (Vacuolar protein sorting 37 protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MT56_9EUKA)

HSP 1 Score: 66.2 bits (160), Expect = 2.370e-9
Identity = 43/163 (26.38%), Postives = 82/163 (50.31%), Query Frame = 1
Query:  430 HTPIPSIPTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSKQESARILREQGEQMRLELKALQTSYEGKAHERNKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLAAKIECM 918
            HTP+P+IP+ F  LE  T  +L  LL D+         +  V  MK ++ ++   N E A+  LSK+    +L+ +       +   +   EGK  ++ + M   +   ++  ++ A+  A+ SS+  A  FL   +  + F++ F++ER+ +H+ +AK E +
Sbjct:   23 HTPLPTIPSTFQELETRTASELAVLLNDEVEYDTFFNSLSCVQTMKQVRDDLRTKNEEVAKRGLSKESELELLQREIMSRHRVISEKKAILEGKLQKQQEIMKQFSTASMINNLEVAAGEAERSSDRTAEQFLNGTIDQKTFIQNFMQERKLFHLRSAKKESL 185          
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: R7UME3_CAPTE (VPS37 C-terminal domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UME3_CAPTE)

HSP 1 Score: 65.9 bits (159), Expect = 1.730e-8
Identity = 67/290 (23.10%), Postives = 130/290 (44.83%), Query Frame = 1
Query:   31 VLQLLSQVSHPWVNQYMQVVGHPNLHGWDATDPPMIGDIVAAVILEFGRDAPTGSSSGRGQDPPPSWGNEVRATGYTTPPQAPMGLAGGGLHIGMTDVEGVRHGHTESSNVQDISNSGRGRKIVPVKGPRR---QDHTPI---------PSIPTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSK----QESARILREQGEQMRLELKALQTSYEGKAHERNKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQD 852
            V+++   ++HPWVN  MQVV    L+ ++      +G ++  ++ EF R+             PP +  +     Y  PP  P              + G       ++++Q  S +   +  +P   P +   Q   P+         P +P  F  L+DL+  +L  L  D+S    ++ +MP V  + D +  +C GN   AR  L++    +ES + L E+ +Q    L  L+T ++  + +++  +       +  ++K A++ A+ +SE +A++FL+ R  A+D
Sbjct:   73 VVKVSPPLTHPWVNNQMQVVDCYELNAFNMHYD--LGKVIRGIVEEFQRN-------------PPLFPPQQSTFSYNYPPNVPT-------------IGGQATPRDFTASLQSYSPAPAAKSTLPYIPPNKGQFQYQNPVANIPGRYAMPDVPEYFSQLKDLSISELRELSADESKLLQMIGQMPEVQKLSDDQERMCGGNECLARENLNQRPILEESKKKLLEKYDQ----LNELRTQFDDLSKKQDDVLQRYDLSTLQDRLKVAAEEAEEASEKIADEFLDDRSFAKD 330          
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: UPI001EB06E8A (vacuolar protein sorting-associated protein 37A-like n=4 Tax=Haliotis TaxID=6452 RepID=UPI001EB06E8A)

HSP 1 Score: 62.4 bits (150), Expect = 2.600e-7
Identity = 74/307 (24.10%), Postives = 126/307 (41.04%), Query Frame = 1
Query:   52 VSHPWVNQYMQVVGHPNLHGWDATDPPMIGDIVAAVILEFGRDAP------TGSSSGRGQDPP--------PSWGNEVRATGYTTPPQAPMGLAGGGLHIGMTDVEGVRHGHTESSNVQDISNSGRGRKIVPVKGPRRQDHTPIPSIPTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSKQESARILREQGEQMRLELKALQTSYEGKAHERNKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLAAKIECMKRDI 930
            ++HPWV+  M+VVG PN++ +       +G  +  ++ EF +  P       G   G  Q P         P +GN         PP  P              VE  R G    S+ QD + S                  P+P I   +  L+D    +L  L++++     LL  +P +A     + ++    V+ AR  L+KQ     L++   +   EL A++  +E                 I   +K A   A+  SE +A+DFL+K++  ++FL+ ++++R   HM  AK E + + I
Sbjct:   80 LTHPWVDIQMKVVGCPNINNFSMHSD--LGVAIQTIVEEFKKTPPRILPHLVGQQFGAPQPPVAPVSGPGYPLYGNPQALYPLVGPPPLPPRA-----------VENGREGPPILSD-QDTNASSPAY--------------PVPDIMKAYPELKDKGLFELQELVDNEEKVLDLLQGLPELARFTQDREDISAQCVQLARENLTKQPVVEELKDSVLKKMSELDAIKGEFETHCEHHLTLSDQFHPANIQTNLKVAVMEAEEESEKIADDFLDKKIDIEEFLQTYMQKRTLCHMRKAKEEKLNQII 358          
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: A0A8J1TI20_OWEFU (Ofus.G034148 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TI20_OWEFU)

HSP 1 Score: 62.4 bits (150), Expect = 2.860e-7
Identity = 75/337 (22.26%), Postives = 147/337 (43.62%), Query Frame = 1
Query:   52 VSHPWVNQYMQVVGHPNLHGWDATDPPMIGDIVAAVILEFGRDAPT---------------------GSSSGRGQDPPPSWG-------NEVRATGY-----------TTPPQAPMGLAGGGLHIGMTDVEGV-RHGHTESSNVQDISNSGRGRKIVPVKGPRRQDHTPIPSIPTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSKQESARILREQGEQMRL----ELKALQTSYEGKAHERNKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLAAKIECMKRDI 930
            V H WV+Q  +V G  +L+ ++      +G IV  ++ EF R+ P                      G  + +G  PPP  G       +  R TG            T PP++ +           +DV  V +H    S + Q   +S          G  +     +P IPT F  L DL+  +L  L E++     +L ++P +  + + +  +C  N   A+  ++     R + E+ +++ L    +L  L+T ++  + ++++     + + I   +K A+  A+  SE +A++FL K++P  DF++++L++R   H   +K E +++ +
Sbjct:   81 VQHAWVDQQNRVTGCMSLNEFNMHKD--LGKIVREIVEEFQRNPPQLQGQRNYSMLPNLPYSLNPPGGHVAPQGAAPPPFSGANTATPYSYTRNTGPSNDYMTNIRMPTLPPRSSV----------TSDVPSVPQHSIVTSQSSQPQYSSSYNNMSEHTLGTYK-----MPDIPTSFPQLRDLSVSELQELSENEDKLLEILQQLPEILKLGEDRQHMCNTNETIAKENIAN----RPVIEKNKEILLKRFDDLNELKTRFDTNSQKQDELRETYSARNIETTLKLATLEAEEQSEKIADEFLSKKIPIDDFIQQYLEKRSLCHNRRSKEEKLQQIV 396          
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: UPI001CF27629 (vacuolar protein sorting-associated protein 37A-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF27629)

HSP 1 Score: 62.0 bits (149), Expect = 3.650e-7
Identity = 73/319 (22.88%), Postives = 140/319 (43.89%), Query Frame = 1
Query:   31 VLQLLSQVSHPWVNQYMQVVGHPNLHGWDATDPPMIGDIVAAVILEFGRDAPTGSSSGRGQDPPPSW-GNEVRATGYTTPPQA----------------PMGLAGGGLHIGMTDVEGVRHGHTE---SSNVQDISNSGRGRKIVPVKGPRRQDHTPIPSI--PTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSKQESARILREQGEQMRLELKALQTSYEGKAHERNKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLAAKIECMK 921
            V+++  Q+ HPWVN  M VVG   ++ +       +G  V  +I EF             +D PP + G++   T +TT P +                P   +   +   ++ +      +     SS V  +S+S    +I      R     P PS   P+ F  L+ L+ ++L  L +     +  L  + SV      K +V   N E AR  LS Q      +++  +M   L  L+ ++   + ++ +     +   I  +++ A+  A+  SE++A++FL K++P ++F+++FL++R+  H   AK + ++
Sbjct:   74 VVKVAPQLLHPWVNDQMMVVGCSAINNFYMHSN--LGRAVMDIINEF-------------KDHPPQFIGSQTSQTSFTTSPSSFQPLSSYSFAGYQPRFPPPSSAPPIAPSLSSLNSPLSQYVPPSVSSPVTAMSHSPANAQITQTTPSRPPPIPPRPSAKAPSSFAELDSLSLEELKDLNDKPEVMEVFLANLESVKKFDVDKEKVMLKNEELARFNLSLQSKLETSKDELLKMCERLSDLKQTFAKSSQKQQELTEVLSMASIRTQMEIAANEAEEQSEAIADEFLAKQMPLEEFIQKFLEKRKLCHSRRAKEDKLR 377          
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Match: A0A8J5AZG3_9DIPT (VPS37 C-terminal domain-containing protein n=2 Tax=Bradysia TaxID=35571 RepID=A0A8J5AZG3_9DIPT)

HSP 1 Score: 57.8 bits (138), Expect = 3.140e-6
Identity = 44/155 (28.39%), Postives = 78/155 (50.32%), Query Frame = 1
Query:  469 LEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNVETARSTLSKQESARILREQGEQMRLELKALQTSYEGKAHERNKNMGGTADQVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLAAKIECMKRDIR 933
            L  L+++ L  LL DD   +A + E+  +A +++ KT +   NV+ A  +L+K+     LR +  ++  + K L T  + K +E      G      L  ++ A+  ++ +S+ +   FL+K LP   FLE+F+  R+  H+   K E M   IR
Sbjct:   16 LNYLSSEDLRELLNDDEKLEARVNEL--LAPLENDKTGILNANVQAAEESLTKEPQLIELRSRVNELSDKSKELCTDIQEKLNEMKSKSSGMNRDTALALLQTAAAESEEASDQIVKQFLDKELPVDGFLEQFMVSRKTMHLRKMKAEKMNELIR 168          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62445.13817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FJ10_ECTSI5.520e-10358.71VPS37 C-terminal domain-containing protein n=2 Tax... [more]
A0A835YJX2_9STRA8.950e-3834.32VPS37 C-terminal domain-containing protein n=1 Tax... [more]
A0A7S2C1W9_9STRA4.220e-1733.13Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6G0X4B8_9STRA1.020e-1526.25VPS37 C-terminal domain-containing protein n=1 Tax... [more]
A0A2P6MT56_9EUKA2.370e-926.38Vacuolar protein sorting 37 protein n=1 Tax=Planop... [more]
R7UME3_CAPTE1.730e-823.10VPS37 C-terminal domain-containing protein n=1 Tax... [more]
UPI001EB06E8A2.600e-724.10vacuolar protein sorting-associated protein 37A-li... [more]
A0A8J1TI20_OWEFU2.860e-722.26Ofus.G034148 protein n=1 Tax=Owenia fusiformis Tax... [more]
UPI001CF276293.650e-722.88vacuolar protein sorting-associated protein 37A-li... [more]
A0A8J5AZG3_9DIPT3.140e-628.39VPS37 C-terminal domain-containing protein n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62445contigH-elongata_contig62445:676..1994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.1
Seed ortholog evalue1.2e-84
Seed eggNOG ortholog2880.D7FJ10
Preferred nameVPS37C
KEGG koko:K09579,ko:K12185
KEGG Pathwayko04144,map04144
KEGG ModuleM00409
GOsGO:0000813,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005770,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006914,GO:0006996,GO:0007032,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0015630,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019058,GO:0019068,GO:0019538,GO:0019941,GO:0022607,GO:0030163,GO:0030496,GO:0031090,GO:0031410,GO:0031902,GO:0031974,GO:0031981,GO:0031982,GO:0032801,GO:0032991,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040012,GO:0040017,GO:0043112,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043900,GO:0043902,GO:0043903,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0046755,GO:0046907,GO:0048306,GO:0048518,GO:0048524,GO:0050789,GO:0050792,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0061919,GO:0065007,GO:0070013,GO:0070925,GO:0071704,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1901564,GO:1901565,GO:1901575,GO:1902186,GO:1902188,GO:1903772,GO:1903774,GO:1903900,GO:1903902
EggNOG free text desc.endosome transport via multivesicular body sorting pathway
EggNOG OGsKOG3270@1,KOG3270@2759
EC5.2.1.8
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03110,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionModifier of rudimentary, Modr
Ec32 orthologEc-07_004850.1
Exons2
Model size939
Cds size939
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931006.727732-CDS-H-elongata_contig62445:675..9081622931006.727732-CDS-H-elongata_contig62445:675..908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62445 676..908 -
1691679659.62548-CDS-H-elongata_contig62445:675..9081691679659.62548-CDS-H-elongata_contig62445:675..908Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62445 676..908 -
1622931006.7469645-CDS-H-elongata_contig62445:1288..19941622931006.7469645-CDS-H-elongata_contig62445:1288..1994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62445 1289..1994 -
1691679659.6397488-CDS-H-elongata_contig62445:1288..19941691679659.6397488-CDS-H-elongata_contig62445:1288..1994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62445 1289..1994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62445.13817.1prot_H-elongata_contig62445.13817.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62445 676..1994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62445.13817.1

>prot_H-elongata_contig62445.13817.1 ID=prot_H-elongata_contig62445.13817.1|Name=mRNA_H-elongata_contig62445.13817.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=313bp
MSGCSIVIDVVLQLLSQVSHPWVNQYMQVVGHPNLHGWDATDPPMIGDIV
AAVILEFGRDAPTGSSSGRGQDPPPSWGNEVRATGYTTPPQAPMGLAGGG
LHIGMTDVEGVRHGHTESSNVQDISNSGRGRKIVPVKGPRRQDHTPIPSI
PTKFDNLEDLTTQQLIRLLEDDSARQALLLEMPSVAGMKDLKTEVCKGNV
ETARSTLSKQESARILREQGEQMRLELKALQTSYEGKAHERNKNMGGTAD
QVILKKVKYASKVADTSSESMANDFLEKRLPAQDFLEEFLKERQRYHMLA
AKIECMKRDIRF*
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mRNA from alignment at H-elongata_contig62445:676..1994-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62445.13817.1 ID=mRNA_H-elongata_contig62445.13817.1|Name=mRNA_H-elongata_contig62445.13817.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1319bp|location=Sequence derived from alignment at H-elongata_contig62445:676..1994- (Himanthalia elongata Himel1 dioecious)
ATGTCTGGTTGTTCGATTGTGATTGACGTAGTGTTACAGCTGTTGTCACA GGTGTCACACCCCTGGGTAAATCAGTACATGCAGGTGGTCGGACATCCCA ATCTTCACGGATGGGATGCCACGGATCCACCAATGATAGGAGACATCGTT GCTGCCGTTATCCTCGAGTTCGGGCGGGACGCTCCAACAGGAAGTTCATC CGGACGCGGTCAGGACCCACCACCGTCTTGGGGAAATGAGGTTCGGGCCA CCGGATATACCACACCTCCACAAGCTCCCATGGGCCTGGCCGGAGGAGGT CTTCACATCGGTATGACAGACGTTGAGGGGGTAAGGCACGGACACACAGA GTCCAGCAATGTTCAAGACATATCTAACTCGGGTCGTGGACGAAAAATAG TTCCGGTGAAAGGACCAAGGCGACAGGATCACACGCCCATCCCTTCGATA CCCACAAAGTTTGATAATCTTGAAGATTTGACGACTCAGCAGCTGATTCG CCTTCTGGAAGACGATTCTGCGCGGCAGGCCTTACTCCTCGAGATGCCAA GCGTCGCGGGGATGAAGGATTTAAAAACTGAAGTATGCAAAGGAAATGTC GAAACAGCCCGATCGACTCTTTCTAAACAAGAGTCCGCTCGCATCCTAAG GGAACAGGGCGAACAAATGAGACTGGAGCTCAAGGCACTGCAAACGTCTT ACGAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAAGTACATCGT GCAACGTATTCTAGTTGGCGCGCTAGACTATTAATCGTATCATAGCTCAT CTGGCAGTCATCGAAAATATAACTCCGCAATATCGAGCAATGGGGGGTGT CGTGCCGAAGTCCAAAATACAACTTGGAGTTTTCATTTAACTCCTTAACC CCTATGGAACTCGATCTGTTTTTTAATACCAAATTCAATATAAAACTTAA AATCCAGCTTTATTAACTGTAACATCACTGTTGCCGCCGAGTGCGCAGAA ACGGATTACTCGGGTGTGGACGTGTAAGAGCGACGTTCATGATCTAACGA CGTCTGTCGCGCGCCGTCCATACTCAAAACTTACAGGCAAAGCGCACGAG CGCAACAAAAATATGGGCGGTACAGCAGACCAAGTCATTCTGAAGAAAGT AAAGTATGCGTCCAAGGTGGCTGATACCAGTTCCGAGAGCATGGCGAACG ACTTCTTAGAGAAACGCCTTCCTGCTCAGGACTTCTTGGAAGAGTTCTTG AAAGAACGACAGCGTTACCACATGCTCGCTGCTAAGATCGAGTGCATGAA ACGGGACATACGGTTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig62445:676..1994-

>mRNA_H-elongata_contig62445.13817.1 ID=mRNA_H-elongata_contig62445.13817.1|Name=mRNA_H-elongata_contig62445.13817.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1878bp|location=Sequence derived from alignment at H-elongata_contig62445:676..1994- (Himanthalia elongata Himel1 dioecious)
ATGTCTGGTTGTTCGATTGTGATTGACGTAGTGTTACAGCTGTTGTCACA
GGTGTCACACCCCTGGGTAAATCAGTACATGCAGGTGGTCGGACATCCCA
ATCTTCACGGATGGGATGCCACGGATCCACCAATGATAGGAGACATCGTT
GCTGCCGTTATCCTCGAGTTCGGGCGGGACGCTCCAACAGGAAGTTCATC
CGGACGCGGTCAGGACCCACCACCGTCTTGGGGAAATGAGGTTCGGGCCA
CCGGATATACCACACCTCCACAAGCTCCCATGGGCCTGGCCGGAGGAGGT
CTTCACATCGGTATGACAGACGTTGAGGGGGTAAGGCACGGACACACAGA
GTCCAGCAATGTTCAAGACATATCTAACTCGGGTCGTGGACGAAAAATAG
TTCCGGTGAAAGGACCAAGGCGACAGGATCACACGCCCATCCCTTCGATA
CCCACAAAGTTTGATAATCTTGAAGATTTGACGACTCAGCAGCTGATTCG
CCTTCTGGAAGACGATTCTGCGCGGCAGGCCTTACTCCTCGAGATGCCAA
GCGTCGCGGGGATGAAGGATTTAAAAACTGAAGTATGCAAAGGAAATGTC
GAAACAGCCCGATCGACTCTTTCTAAACAAGAGTCCGCTCGCATCCTAAG
GGAACAGGGCGAACAAATGAGACTGGAGCTCAAGGCACTGCAAACGTCTT
ACGAAGATGTCTGGTTGTTCGATTGTGATTGACGTAGTGTTACAGCTGTT
GTCACAGGTGTCACACCCCTGGGTAAATCAGTACATGCAGGTGGTCGGAC
ATCCCAATCTTCACGGATGGGATGCCACGGATCCACCAATGATAGGAGAC
ATCGTTGCTGCCGTTATCCTCGAGTTCGGGCGGGACGCTCCAACAGGAAG
TTCATCCGGACGCGGTCAGGACCCACCACCGTCTTGGGGAAATGAGGTTC
GGGCCACCGGATATACCACACCTCCACAAGCTCCCATGGGCCTGGCCGGA
GGAGGTCTTCACATCGGTATGACAGACGTTGAGGGGGTAAGGCACGGACA
CACAGAGTCCAGCAATGTTCAAGACATATCTAACTCGGGTCGTGGACGAA
AAATAGTTCCGGTGAAAGGACCAAGGCGACAGGATCACACGCCCATCCCT
TCGATACCCACAAAGTTTGATAATCTTGAAGATTTGACGACTCAGCAGCT
GATTCGCCTTCTGGAAGACGATTCTGCGCGGCAGGCCTTACTCCTCGAGA
TGCCAAGCGTCGCGGGGATGAAGGATTTAAAAACTGAAGTATGCAAAGGA
AATGTCGAAACAGCCCGATCGACTCTTTCTAAACAAGAGTCCGCTCGCAT
CCTAAGGGAACAGGGCGAACAAATGAGACTGGAGCTCAAGGCACTGCAAA
CGTCTTACGAAGGCAAAGCGCACGAGCGCAACAAAAATATGGGCGGTACA
GCAGACCAAGTCATTCTGAAGAAAGTAAAGTATGCGTCCAAGGTGGCTGA
TACCAGTTCCGAGAGCATGGCGAACGACTTCTTAGAGAAACGCCTTCCTG
CTCAGGACTTCTTGGAAGAGTTCTTGAAAGAACGACAGCGTTACCACATG
CTCGCTGCTAAGATCGAGTGCATGAAACGGGACATACGGTTTTGAGCAAA
GCGCACGAGCGCAACAAAAATATGGGCGGTACAGCAGACCAAGTCATTCT
GAAGAAAGTAAAGTATGCGTCCAAGGTGGCTGATACCAGTTCCGAGAGCA
TGGCGAACGACTTCTTAGAGAAACGCCTTCCTGCTCAGGACTTCTTGGAA
GAGTTCTTGAAAGAACGACAGCGTTACCACATGCTCGCTGCTAAGATCGA
GTGCATGAAACGGGACATACGGTTTTGA
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