mRNA_H-elongata_contig62427.13815.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62427.13815.1
Unique NamemRNA_H-elongata_contig62427.13815.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62427.13815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62427contigH-elongata_contig62427:1531..2016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog2880.D7G375
EggNOG free text desc.protein disulfide oxidoreductase activity
EggNOG OGsCOG0695@1,KOG1752@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931006.4110615-CDS-H-elongata_contig62427:1530..16561622931006.4110615-CDS-H-elongata_contig62427:1530..1656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62427 1531..1656 +
1691679659.515169-CDS-H-elongata_contig62427:1530..16561691679659.515169-CDS-H-elongata_contig62427:1530..1656Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62427 1531..1656 +
1622931006.4318492-CDS-H-elongata_contig62427:1908..20161622931006.4318492-CDS-H-elongata_contig62427:1908..2016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62427 1909..2016 +
1691679659.524678-CDS-H-elongata_contig62427:1908..20161691679659.524678-CDS-H-elongata_contig62427:1908..2016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62427 1909..2016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62427.13815.1prot_H-elongata_contig62427.13815.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62427 1531..2016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62427.13815.1

>prot_H-elongata_contig62427.13815.1 ID=prot_H-elongata_contig62427.13815.1|Name=mRNA_H-elongata_contig62427.13815.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
FLLPPHSPTTVDNCVVRLNGIFGFAISAATCVFADRSTTQWVVLGLTLDF
ALKLGGFPSPLSMLAALPLAGTRPALR*
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mRNA from alignment at H-elongata_contig62427:1531..2016+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62427.13815.1 ID=mRNA_H-elongata_contig62427.13815.1|Name=mRNA_H-elongata_contig62427.13815.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=486bp|location=Sequence derived from alignment at H-elongata_contig62427:1531..2016+ (Himanthalia elongata Himel1 dioecious)
TTTCTGCTGCCGCCTCACTCCCCGACAACCGTGGACAACTGCGTTGTACG
CCTAAACGGCATATTTGGCTTTGCAATTTCGGCAGCGACATGCGTCTTTG
CCGACCGCAGTACTACGCAGTGGGTGGTGAGCTAAATTAAATCCTGTAAA
TTCAAGAGTGGGGGGAGGCATCCTAGTGTGAGCCCTCCTCTAGTCGTTCT
ACGAACAATTTCTTGCTTTGGTTGGTTAGTCGTCCTTTGTTTTGTGTGCC
TTAGTGAAGCTTTGGGGATAAAATTGGGGATATAATTTGGCATATCACTA
GAATAAATCTAGCTCCGCCTCTCCTACCAAGCGAGAAACAAAACGTCGCA
ACCACGTAATACATTCCGATTTGCGCAGGTGTTGGGACTGACGTTGGATT
TTGCCCTAAAGTTAGGAGGGTTTCCTAGCCCTCTTAGCATGCTTGCCGCT
CTACCCTTGGCGGGTACAAGGCCAGCCCTAAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig62427:1531..2016+

>mRNA_H-elongata_contig62427.13815.1 ID=mRNA_H-elongata_contig62427.13815.1|Name=mRNA_H-elongata_contig62427.13815.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig62427:1531..2016+ (Himanthalia elongata Himel1 dioecious)
TTTCTGCTGCCGCCTCACTCCCCGACAACCGTGGACAACTGCGTTGTACG
CCTAAACGGCATATTTGGCTTTGCAATTTCGGCAGCGACATGCGTCTTTG
CCGACCGCAGTACTACGCAGTGGGTGTTTCTGCTGCCGCCTCACTCCCCG
ACAACCGTGGACAACTGCGTTGTACGCCTAAACGGCATATTTGGCTTTGC
AATTTCGGCAGCGACATGCGTCTTTGCCGACCGCAGTACTACGCAGTGGG
TGGTGTTGGGACTGACGTTGGATTTTGCCCTAAAGTTAGGAGGGTTTCCT
AGCCCTCTTAGCATGCTTGCCGCTCTACCCTTGGCGGGTACAAGGCCAGC
CCTAAGGTGAGTGTTGGGACTGACGTTGGATTTTGCCCTAAAGTTAGGAG
GGTTTCCTAGCCCTCTTAGCATGCTTGCCGCTCTACCCTTGGCGGGTACA
AGGCCAGCCCTAAGGTGA
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