mRNA_H-elongata_contig62401.13812.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62401.13812.1
Unique NamemRNA_H-elongata_contig62401.13812.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62401.13812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62401contigH-elongata_contig62401:727..1535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size778
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62401.13812.1prot_H-elongata_contig62401.13812.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62401 751..1186 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931006.1650696-UTR-H-elongata_contig62401:726..7501622931006.1650696-UTR-H-elongata_contig62401:726..750Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62401 727..750 +
1691679659.3953009-UTR-H-elongata_contig62401:726..7501691679659.3953009-UTR-H-elongata_contig62401:726..750Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62401 727..750 +
1622931006.2183151-UTR-H-elongata_contig62401:1186..15351622931006.2183151-UTR-H-elongata_contig62401:1186..1535Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62401 1187..1535 +
1691679659.4305038-UTR-H-elongata_contig62401:1186..15351691679659.4305038-UTR-H-elongata_contig62401:1186..1535Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62401 1187..1535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931006.189899-CDS-H-elongata_contig62401:750..8241622931006.189899-CDS-H-elongata_contig62401:750..824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62401 751..824 +
1691679659.4079165-CDS-H-elongata_contig62401:750..8241691679659.4079165-CDS-H-elongata_contig62401:750..824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62401 751..824 +
1622931006.2021813-CDS-H-elongata_contig62401:855..11861622931006.2021813-CDS-H-elongata_contig62401:855..1186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62401 856..1186 +
1691679659.420438-CDS-H-elongata_contig62401:855..11861691679659.420438-CDS-H-elongata_contig62401:855..1186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62401 856..1186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62401.13812.1

>prot_H-elongata_contig62401.13812.1 ID=prot_H-elongata_contig62401.13812.1|Name=mRNA_H-elongata_contig62401.13812.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MEGEGGFCGRWSASGVPRTPESGWLVDHGGLTEDGRGSQNDDAPARVRIC
VWCSVLVRSRGFTRSCDGDTDTHRTLLEIYSGWTSATSSKILNNYNDGRY
MRPKTPLERFILAWERRREASFACRKSNDFIAGV*
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mRNA from alignment at H-elongata_contig62401:727..1535+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62401.13812.1 ID=mRNA_H-elongata_contig62401.13812.1|Name=mRNA_H-elongata_contig62401.13812.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=809bp|location=Sequence derived from alignment at H-elongata_contig62401:727..1535+ (Himanthalia elongata Himel1 dioecious)
AGGTGGTGAGTGTCGTGGCCGCTGATGGAAGGCGAAGGAGGTTTCTGTGG
ACGCTGGAGCGCCAGCGGCGTCCCCCGGACACCGGAAAGTGGTTGGTTTA
CGGGGTCGTGAGCTCGGACGTGGATGGGAAGTTGACCATGGAGGGCTGAC
CGAGGACGGTCGAGGGTCACAAAACGATGACGCGCCAGCACGCGTGCGTA
TATGTGTGTGGTGCAGCGTATTGGTGCGCTCCAGAGGCTTTACACGGTCA
TGCGACGGTGACACGGATACACACCGCACCCTCCTCGAGATATACAGTGG
GTGGACTTCGGCGACGTCGTCGAAGATTCTTAACAATTACAATGATGGAC
GGTACATGCGGCCCAAAACTCCTCTAGAGAGATTTATATTGGCTTGGGAA
AGGAGGAGAGAGGCTTCGTTTGCTTGCAGGAAATCAAATGATTTCATTGC
TGGAGTTTGATCAAGGCGAACGTGTGTACGTTCAATCCGCACCCAGCGCG
GTTGATCGATTTCGTGTGATGGATGGTCGGGACGCTCTCCGCGTGGTCGA
GCCTCCAGATTTCGTGATGGACCAAAATACCTATTTACCGAGCCTACAAG
GCTTTGTACGCTGTAGCGCTGTAGGTATGATAGTGCGCTTCATCCAGATC
CCCTTGGCGTTTATCGTGTTTAGTTCGGATGTATGGCCTGGATCTTTAGT
CTCCCAATCCTATTTTTTAAATTTTCAGTTGAAAGATGTGCGTGCATTCA
TTATATATATATATATATATTTATTTATTTTTACGAAAGTCACGAAGCCT
GGGTCAACG
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Coding sequence (CDS) from alignment at H-elongata_contig62401:727..1535+

>mRNA_H-elongata_contig62401.13812.1 ID=mRNA_H-elongata_contig62401.13812.1|Name=mRNA_H-elongata_contig62401.13812.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig62401:727..1535+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGGCGAAGGAGGTTTCTGTGGACGCTGGAGCGCCAGCGGCGTCCC
CCGGACACCGGAAAGTGGTTGGTTATGGAAGGCGAAGGAGGTTTCTGTGG
ACGCTGGAGCGCCAGCGGCGTCCCCCGGACACCGGAAAGTGGTTGGTTAG
TTGACCATGGAGGGCTGACCGAGGACGGTCGAGGGTCACAAAACGATGAC
GCGCCAGCACGCGTGCGTATATGTGTGTGGTGCAGCGTATTGGTGCGCTC
CAGAGGCTTTACACGGTCATGCGACGGTGACACGGATACACACCGCACCC
TCCTCGAGATATACAGTGGGTGGACTTCGGCGACGTCGTCGAAGATTCTT
AACAATTACAATGATGGACGGTACATGCGGCCCAAAACTCCTCTAGAGAG
ATTTATATTGGCTTGGGAAAGGAGGAGAGAGGCTTCGTTTGCTTGCAGGA
AATCAAATGATTTCATTGCTGGAGTTTGAAGTTGACCATGGAGGGCTGAC
CGAGGACGGTCGAGGGTCACAAAACGATGACGCGCCAGCACGCGTGCGTA
TATGTGTGTGGTGCAGCGTATTGGTGCGCTCCAGAGGCTTTACACGGTCA
TGCGACGGTGACACGGATACACACCGCACCCTCCTCGAGATATACAGTGG
GTGGACTTCGGCGACGTCGTCGAAGATTCTTAACAATTACAATGATGGAC
GGTACATGCGGCCCAAAACTCCTCTAGAGAGATTTATATTGGCTTGGGAA
AGGAGGAGAGAGGCTTCGTTTGCTTGCAGGAAATCAAATGATTTCATTGC
TGGAGTTTGA
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