mRNA_H-elongata_contig11776.1381.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11776.1381.1
Unique NamemRNA_H-elongata_contig11776.1381.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11776.1381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11776contigH-elongata_contig11776:2060..2618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size559
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929686.7122827-UTR-H-elongata_contig11776:2059..22461622929686.7122827-UTR-H-elongata_contig11776:2059..2246Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11776 2060..2246 +
1691679119.11074-UTR-H-elongata_contig11776:2059..22461691679119.11074-UTR-H-elongata_contig11776:2059..2246Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11776 2060..2246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929686.727939-CDS-H-elongata_contig11776:2246..26181622929686.727939-CDS-H-elongata_contig11776:2246..2618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11776 2247..2618 +
1691679119.1219323-CDS-H-elongata_contig11776:2246..26181691679119.1219323-CDS-H-elongata_contig11776:2246..2618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11776 2247..2618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11776.1381.1prot_H-elongata_contig11776.1381.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11776 2247..2618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11776.1381.1

>prot_H-elongata_contig11776.1381.1 ID=prot_H-elongata_contig11776.1381.1|Name=mRNA_H-elongata_contig11776.1381.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MCNIFARGGCSHRLFIGSATWRGNSSYVFIRNGGDGGEIERERSRAAGGS
ECVTYATRVRHFHWNWSSCHRTTFRDGVEAGAAVSRGGREEVLAEVLRMT
GGFFPVGPGALPALLPVPPPLCHR
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mRNA from alignment at H-elongata_contig11776:2060..2618+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11776.1381.1 ID=mRNA_H-elongata_contig11776.1381.1|Name=mRNA_H-elongata_contig11776.1381.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=559bp|location=Sequence derived from alignment at H-elongata_contig11776:2060..2618+ (Himanthalia elongata Himel1 dioecious)
CTTCGCACGGGGAGGTTTTTTCCACCGCGTCTTCATCGGCGGTGGCACCG
GCAGCTCCACGTAGAGGGTTCATTCTTCCTACGTCGTCATCGGGAACGGC
GGCGACGGTGACGGATTCGAGCGAGGGCAGAGTCGGGCCGCCGGTGGTAG
TGAGTGCGTTGCCTACGCCACCCGTGGCTCCGAAAATATGTGCAACATCT
TCGCACGGGGAGGTTGTTCCCACCGCCTCTTCATCGGCAGCGCCACGTGG
AGAGGGAATTCTTCCTACGTCTTTATCCGGAACGGTGGCGACGGTGGCGA
GATCGAGCGAGAGCGGAGTCGGGCCGCCGGTGGTAGTGAGTGCGTCACCT
ACGCCACCCGCGTCAGACACTTCCACTGGAACTGGAGCAGCTGCCACCGG
ACAACCTTTAGGGACGGAGTAGAAGCAGGGGCCGCTGTATCGCGTGGTGG
GCGTGAAGAGGTGCTCGCGGAAGTTTTGCGGATGACCGGGGGCTTTTTTC
CGGTGGGTCCAGGTGCCTTGCCTGCGCTCTTACCTGTCCCTCCCCCACTC
TGCCACAGG
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Coding sequence (CDS) from alignment at H-elongata_contig11776:2060..2618+

>mRNA_H-elongata_contig11776.1381.1 ID=mRNA_H-elongata_contig11776.1381.1|Name=mRNA_H-elongata_contig11776.1381.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig11776:2060..2618+ (Himanthalia elongata Himel1 dioecious)
ATGTGCAACATCTTCGCACGGGGAGGTTGTTCCCACCGCCTCTTCATCGG
CAGCGCCACGTGGAGAGGGAATTCTTCCTACGTCTTTATCCGGAACGGTG
GCGACGGTGGCGAGATCGAGCGAGAGCGGAGTCGGGCCGCCGGTGGTAGT
GAGTGCGTCACCTACGCCACCCGCGTCAGACACTTCCACTGGAACTGGAG
CAGCTGCCACCGGACAACCTTTAGGGACGGAGTAGAAGCAGGGGCCGCTG
TATCGCGTGGTGGGCGTGAAGAGGTGCTCGCGGAAGTTTTGCGGATGACC
GGGGGCTTTTTTCCGGTGGGTCCAGGTGCCTTGCCTGCGCTCTTACCTGT
CCCTCCCCCACTCTGCCACAGGATGTGCAACATCTTCGCACGGGGAGGTT
GTTCCCACCGCCTCTTCATCGGCAGCGCCACGTGGAGAGGGAATTCTTCC
TACGTCTTTATCCGGAACGGTGGCGACGGTGGCGAGATCGAGCGAGAGCG
GAGTCGGGCCGCCGGTGGTAGTGAGTGCGTCACCTACGCCACCCGCGTCA
GACACTTCCACTGGAACTGGAGCAGCTGCCACCGGACAACCTTTAGGGAC
GGAGTAGAAGCAGGGGCCGCTGTATCGCGTGGTGGGCGTGAAGAGGTGCT
CGCGGAAGTTTTGCGGATGACCGGGGGCTTTTTTCCGGTGGGTCCAGGTG
CCTTGCCTGCGCTCTTACCTGTCCCTCCCCCACTCTGCCACAGG
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