mRNA_H-elongata_contig62392.13810.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62392.13810.1
Unique NamemRNA_H-elongata_contig62392.13810.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62392.13810.1 vs. uniprot
Match: D7G0C8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0C8_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 5.030e-12
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:   19 LQYSTRHIQSLCAHGKELGDASMSKEAPIVKRLLEEFIFR 138
            LQ +TR +QSLCAHGK++GDA+MSKEAP VK+LLEEFIFR
Sbjct: 1270 LQQTTRQMQSLCAHGKDVGDAAMSKEAPAVKKLLEEFIFR 1309
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BLAST of mRNA_H-elongata_contig62392.13810.1 vs. uniprot
Match: A0A8K1C9Z7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C9Z7_PYTOL)

HSP 1 Score: 50.4 bits (119), Expect = 6.560e-6
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 MCVFSYLQYSTRHIQSLCAHGKELGDASMSKEAPIVKRLLEEFIFR 138
            M + S +Q +TR +Q LCAHGK + DA+   + P+VK+LLE FI+R
Sbjct: 1226 MKLISEVQVATRRMQVLCAHGKLIKDATAGAQVPMVKKLLERFIYR 1271
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62392.13810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0C8_ECTSI5.030e-1277.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8K1C9Z7_PYTOL6.560e-650.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62392contigH-elongata_contig62392:1127..1267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog2880.D7G0C8
Preferred nameFANCD2
KEGG koko:K10891
KEGG Pathwayko03460,map03460
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000278,GO:0000280,GO:0000793,GO:0002682,GO:0002694,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006289,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007093,GO:0007127,GO:0007129,GO:0007275,GO:0007276,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009653,GO:0009887,GO:0009889,GO:0009966,GO:0009987,GO:0010212,GO:0010332,GO:0010468,GO:0010556,GO:0010646,GO:0016043,GO:0016604,GO:0019219,GO:0019222,GO:0019827,GO:0019899,GO:0019953,GO:0022402,GO:0022414,GO:0023051,GO:0031323,GO:0031326,GO:0031347,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032101,GO:0032501,GO:0032502,GO:0032504,GO:0033554,GO:0034599,GO:0034641,GO:0036297,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0045132,GO:0045143,GO:0045580,GO:0045589,GO:0045595,GO:0045619,GO:0045786,GO:0045930,GO:0046483,GO:0048285,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048731,GO:0048854,GO:0048856,GO:0050727,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051052,GO:0051090,GO:0051171,GO:0051239,GO:0051249,GO:0051252,GO:0051276,GO:0051321,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060322,GO:0061982,GO:0065007,GO:0065009,GO:0070013,GO:0070182,GO:0070192,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0090329,GO:0097150,GO:0098727,GO:0098813,GO:0140013,GO:1901360,GO:1902105,GO:1903046,GO:1903047,GO:1903506,GO:1903706,GO:2000026,GO:2000112,GO:2000348,GO:2001141
EggNOG free text desc.DNA polymerase binding
EggNOG OGsKOG4712@1,KOG4712@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931006.05894-CDS-H-elongata_contig62392:1126..12671622931006.05894-CDS-H-elongata_contig62392:1126..1267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62392 1127..1267 -
1691679659.3530915-CDS-H-elongata_contig62392:1126..12671691679659.3530915-CDS-H-elongata_contig62392:1126..1267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62392 1127..1267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62392.13810.1prot_H-elongata_contig62392.13810.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62392 1127..1267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62392.13810.1

>prot_H-elongata_contig62392.13810.1 ID=prot_H-elongata_contig62392.13810.1|Name=mRNA_H-elongata_contig62392.13810.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
MCVFSYLQYSTRHIQSLCAHGKELGDASMSKEAPIVKRLLEEFIFR*
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mRNA from alignment at H-elongata_contig62392:1127..1267-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62392.13810.1 ID=mRNA_H-elongata_contig62392.13810.1|Name=mRNA_H-elongata_contig62392.13810.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig62392:1127..1267- (Himanthalia elongata Himel1 dioecious)
ATGTGCGTTTTTTCTTATCTTCAGTACTCCACGAGACATATTCAGTCTCT
GTGTGCCCACGGTAAGGAATTGGGCGACGCCTCCATGTCAAAGGAAGCCC
CGATCGTGAAGAGGCTCCTCGAAGAGTTCATCTTCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig62392:1127..1267-

>mRNA_H-elongata_contig62392.13810.1 ID=mRNA_H-elongata_contig62392.13810.1|Name=mRNA_H-elongata_contig62392.13810.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig62392:1127..1267- (Himanthalia elongata Himel1 dioecious)
ATGTGCGTTTTTTCTTATCTTCAGTACTCCACGAGACATATTCAGTCTCT
GTGTGCCCACGGTAAGGAATTGGGCGACGCCTCCATGTCAAAGGAAGCCC
CGATCGTGAAGAGGCTCCTCGAAGAGTTCATCTTCAGGTGAATGTGCGTT
TTTTCTTATCTTCAGTACTCCACGAGACATATTCAGTCTCTGTGTGCCCA
CGGTAAGGAATTGGGCGACGCCTCCATGTCAAAGGAAGCCCCGATCGTGA
AGAGGCTCCTCGAAGAGTTCATCTTCAGGTGA
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