mRNA_H-elongata_contig62316.13805.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62316.13805.1
Unique NamemRNA_H-elongata_contig62316.13805.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62316.13805.1 vs. uniprot
Match: A0A7S3NFY8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NFY8_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.090e-43
Identity = 76/99 (76.77%), Postives = 86/99 (86.87%), Query Frame = 1 
Query:    1 MGIDLVAGGRRVGHKVRKAPVSKNVYLGLLVKLFRFLARRTDSAFAKVVLKRLYMSKTNRAPISLSRLVRYMRNKEESTAVIVGGVTDDVRLLEVPKLS 297
            MGIDL AGGRRVGHK R  P+S NVYL LLVKL+RFLARRTDS F KVVLKRLYMS+TNR P+S+SRL R+M++K+E TAVIVG VTDD RLLEVPK+S
Sbjct:    1 MGIDLKAGGRRVGHKARSEPLSDNVYLKLLVKLYRFLARRTDSKFVKVVLKRLYMSRTNRPPLSVSRLARFMKDKDEKTAVIVGTVTDDPRLLEVPKMS 99
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BLAST of mRNA_H-elongata_contig62316.13805.1 vs. uniprot
Match: A0A7S2UVJ6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVJ6_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.550e-43
Identity = 80/115 (69.57%), Postives = 90/115 (78.26%), Query Frame = 1 
Query:    1 MGIDLVAGGRRVGHKVRKAPVSKNVYLGLLVKLFRFLARRTDSAFAKVVLKRLYMSKTNRAPISLSRLVRYMRNKEESTAVIVGGVTDDVRLLEVPKLSGESFKAVRARRNVIPK 345
            MGIDL AGGRRVGHKVR +P SKNVYL LLV+L+RFLARRTDS F KVVLKRLYMSKTN  P+S+SRL RYM+ KE+ TAVIVG VTDD RLL++P L   + K   A R  I K
Sbjct:    1 MGIDLKAGGRRVGHKVRTSPKSKNVYLNLLVRLYRFLARRTDSKFVKVVLKRLYMSKTNSPPMSISRLTRYMKGKEDQTAVIVGTVTDDSRLLKLPALKVCALKFTEAARARILK 115
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BLAST of mRNA_H-elongata_contig62316.13805.1 vs. uniprot
Match: A0A4D9D1Z3_9STRA (Ribosomal_L18e/L15P domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1Z3_9STRA)

HSP 1 Score: 143 bits (361), Expect = 4.000e-41
Identity = 74/110 (67.27%), Postives = 85/110 (77.27%), Query Frame = 1 
Query:    1 MGIDLVAGGRRVGHKVRKAPVSKNVYLGLLVKLFRFLARRTDSAFAKVVLKRLYMSKTNRAPISLSRLVRYMRNKEESTAVIVGGVTDDVRLLEVPKLSGESFKAVRARR 330
            MGIDL +GGRR GHK R AP S NVYL LLVKL+RFLARRTDS F  V+LKRL+MSK NR PI++SRLVR+M+ KE  TAVIVG +TDD R+LEVPKLS  + K     R
Sbjct:    1 MGIDLKSGGRRTGHKTRTAPKSDNVYLKLLVKLYRFLARRTDSNFNAVILKRLFMSKNNRPPIAISRLVRHMKGKEGKTAVIVGTITDDARMLEVPKLSVAALKVTATAR 110
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BLAST of mRNA_H-elongata_contig62316.13805.1 vs. uniprot
Match: F0Y951_AURAN (Ribosomal_L18e/L15P domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y951_AURAN)

HSP 1 Score: 137 bits (345), Expect = 1.090e-38
Identity = 71/115 (61.74%), Postives = 87/115 (75.65%), Query Frame = 1 
Query:    1 MGIDLVAGGRRVGHKVRKAPVSKNVYLGLLVKLFRFLARRTDSAFAKVVLKRLYMSKTNRAPISLSRLVRYMRNKEESTAVIVGGVTDDVRLLEVPKLSGESFKAVRARRNVIPK 345
            MGID+VAGGRRVGHK R    S+NVYL LLVKL+RFLARRTDSAF K VLKRL+MS+TNR P+SLS L R+MR K++  AV+VG +TDD R+L VPK++  + +     R  I K
Sbjct:    1 MGIDIVAGGRRVGHKARTDTKSENVYLKLLVKLYRFLARRTDSAFVKTVLKRLFMSRTNRPPLSLSALARFMREKDDKIAVLVGTITDDPRMLTVPKMTVCALRFTETARARIVK 115
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BLAST of mRNA_H-elongata_contig62316.13805.1 vs. uniprot
Match: A0A835ZAE3_9STRA (Cytoplasmic ribosomal protein L18 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAE3_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.250e-37
Identity = 71/113 (62.83%), Postives = 85/113 (75.22%), Query Frame = 1 
Query:    1 MGIDLVAGGRRVGHKVRKAPVSKNVYLGLLVKLFRFLARRTDSAFAKVVLKRLYMSKTNRAPISLSRLVRYMRNKEESTAVIVGGVTDDVRLLEVPKLSGESFKAVRARRNVI 339
            MGIDLVAGGRRVGHK R AP S NVYLGLL KL++FLARRT+S F   VLKRLYMSKTNR P+ L RL ++M  K+  TAV+V  VTDD RLLEVPK++  + +   + R+ I
Sbjct:    1 MGIDLVAGGRRVGHKARSAPKSDNVYLGLLSKLYKFLARRTNSNFVATVLKRLYMSKTNRPPLGLGRLSKFMIGKDGLTAVVVATVTDDNRLLEVPKMTVCALRFTESARSRI 113
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BLAST of mRNA_H-elongata_contig62316.13805.1 vs. uniprot
Match: A0A7S3V3K8_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V3K8_9STRA)

HSP 1 Score: 133 bits (334), Expect = 4.010e-37
Identity = 68/98 (69.39%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 MGIDLVAGGRRVGHKVRKAPVSKNVYLGLLVKLFRFLARRTDSAFAKVVLKRLYMSKTNRAPISLSRLVRYMRNKEESTAVIVGGVTDDVRLLEVPKL 294
            MGIDLVAGGR VGHK R AP S NVYL LLVKL+RFLARRTD+ F K+VLKRLYMSK NR P+ L+RLVRY + KE+   V+VG VTDD R+ +VP L
Sbjct:    1 MGIDLVAGGRYVGHKNRTAPQSDNVYLKLLVKLYRFLARRTDAKFNKIVLKRLYMSKVNRPPMGLNRLVRYAKGKEDKIVVVVGTVTDDARMRKVPAL 98
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BLAST of mRNA_H-elongata_contig62316.13805.1 vs. uniprot
Match: A0A061SDM1_9CHLO (Large subunit ribosomal protein L18e n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SDM1_9CHLO)

HSP 1 Score: 133 bits (334), Expect = 4.490e-37
Identity = 68/98 (69.39%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    1 MGIDLVAGGRRVGHKVRKAPVSKNVYLGLLVKLFRFLARRTDSAFAKVVLKRLYMSKTNRAPISLSRLVRYMRNKEESTAVIVGGVTDDVRLLEVPKL 294
            MGID+ AGGR   +  R AP S+NVYL LLVKL+RFLARRTDS+F K+VLKR++MSKTNR P+SLSRL RYM+ KE+  AV+VG VTDDVR+ EVPKL
Sbjct:    1 MGIDIKAGGRVTKNARRTAPKSENVYLQLLVKLYRFLARRTDSSFNKIVLKRMFMSKTNRPPLSLSRLARYMKGKEDKIAVLVGKVTDDVRMYEVPKL 98
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BLAST of mRNA_H-elongata_contig62316.13805.1 vs. uniprot
Match: A0A7S2D2F7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D2F7_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.970e-37
Identity = 68/98 (69.39%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:    1 MGIDLVAGGRRVGHKVRKAPVSKNVYLGLLVKLFRFLARRTDSAFAKVVLKRLYMSKTNRAPISLSRLVRYMRNKEESTAVIVGGVTDDVRLLEVPKL 294
            MGIDL AGGRRVGHK R +P S NVYL LLVKL+ FL+RRTDS F KVVLKRLY SKTNR PIS+S++ R+M  ++  TAVIVG VTDD+RL E+P L
Sbjct:   14 MGIDLKAGGRRVGHKARTSPKSDNVYLKLLVKLYAFLSRRTDSKFCKVVLKRLYQSKTNRPPISVSKIARFMGKQDGKTAVIVGTVTDDIRLTELPAL 111
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BLAST of mRNA_H-elongata_contig62316.13805.1 vs. uniprot
Match: A0A196SBA4_BLAHN (Ribosomal protein L18 (Fragment) n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SBA4_BLAHN)

HSP 1 Score: 130 bits (327), Expect = 6.590e-37
Identity = 64/115 (55.65%), Postives = 86/115 (74.78%), Query Frame = 1 
Query:    1 MGIDLVAGGRRVGHKVRKAPVSKNVYLGLLVKLFRFLARRTDSAFAKVVLKRLYMSKTNRAPISLSRLVRYMRNKEESTAVIVGGVTDDVRLLEVPKLSGESFKAVRARRNVIPK 345
            MGIDL+AGGR+ GHK R+AP S N+YL LLVKL+RF+ARRT + F +VVL+RLYMS+ NR P+SLS L R+M+ +++  AV+VG +TDDVRL+EVP +   + +     R  I K
Sbjct:    1 MGIDLIAGGRKCGHKTREAPKSDNIYLALLVKLYRFIARRTGAKFPEVVLRRLYMSRINRPPMSLSSLARHMQGRDDKIAVVVGTITDDVRLIEVPAMKVCALRFTETARARIVK 115
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BLAST of mRNA_H-elongata_contig62316.13805.1 vs. uniprot
Match: D8M2N8_BLAHO (Ribosomal_L18e/L15P domain-containing protein n=3 Tax=Blastocystis hominis TaxID=12968 RepID=D8M2N8_BLAHO)

HSP 1 Score: 132 bits (333), Expect = 7.540e-37
Identity = 66/97 (68.04%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    4 GIDLVAGGRRVGHKVRKAPVSKNVYLGLLVKLFRFLARRTDSAFAKVVLKRLYMSKTNRAPISLSRLVRYMRNKEESTAVIVGGVTDDVRLLEVPKL 294
            GIDLVAGGR  GHK R+AP S+NVYL LLV L+RFLARRT++ F +VVLKRLYMS+ NR P+SLSRL+++M+ KE+  AVIVG VTDD+R++EVP L
Sbjct:    9 GIDLVAGGRNCGHKKRQAPKSENVYLALLVNLYRFLARRTNARFPEVVLKRLYMSRINRPPMSLSRLMKHMQGKEDKIAVIVGTVTDDIRVIEVPAL 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62316.13805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3NFY8_9STRA1.090e-4376.77Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2UVJ6_9STRA1.550e-4369.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9D1Z3_9STRA4.000e-4167.27Ribosomal_L18e/L15P domain-containing protein n=2 ... [more]
F0Y951_AURAN1.090e-3861.74Ribosomal_L18e/L15P domain-containing protein n=1 ... [more]
A0A835ZAE3_9STRA1.250e-3762.83Cytoplasmic ribosomal protein L18 n=1 Tax=Tribonem... [more]
A0A7S3V3K8_9STRA4.010e-3769.39Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A061SDM1_9CHLO4.490e-3769.39Large subunit ribosomal protein L18e n=1 Tax=Tetra... [more]
A0A7S2D2F7_9STRA4.970e-3769.39Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A196SBA4_BLAHN6.590e-3755.65Ribosomal protein L18 (Fragment) n=1 Tax=Blastocys... [more]
D8M2N8_BLAHO7.540e-3768.04Ribosomal_L18e/L15P domain-containing protein n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62316contigH-elongata_contig62316:760..1113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.6
Seed ortholog evalue4.3e-40
Seed eggNOG ortholog2880.D7FML2
Preferred nameRPL18
KEGG koko:K02883,ko:K18749,ko:K21442
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0031090,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055044,GO:0071704,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal protein
EggNOG OGsCOG1727@1,KOG1714@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03019,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncytoplasmic ribosomal protein L18
Ec32 orthologEc-23_000720.1
Exons1
Model size354
Cds size354
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931005.4632711-CDS-H-elongata_contig62316:759..11131622931005.4632711-CDS-H-elongata_contig62316:759..1113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62316 760..1113 -
1691679659.125123-CDS-H-elongata_contig62316:759..11131691679659.125123-CDS-H-elongata_contig62316:759..1113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62316 760..1113 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62316.13805.1prot_H-elongata_contig62316.13805.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62316 760..1113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62316.13805.1

>prot_H-elongata_contig62316.13805.1 ID=prot_H-elongata_contig62316.13805.1|Name=mRNA_H-elongata_contig62316.13805.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
MGIDLVAGGRRVGHKVRKAPVSKNVYLGLLVKLFRFLARRTDSAFAKVVL
KRLYMSKTNRAPISLSRLVRYMRNKEESTAVIVGGVTDDVRLLEVPKLSG
ESFKAVRARRNVIPKLD*
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mRNA from alignment at H-elongata_contig62316:760..1113-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62316.13805.1 ID=mRNA_H-elongata_contig62316.13805.1|Name=mRNA_H-elongata_contig62316.13805.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=354bp|location=Sequence derived from alignment at H-elongata_contig62316:760..1113- (Himanthalia elongata Himel1 dioecious)
ATGGGTATCGATTTAGTCGCTGGTGGGCGCCGTGTGGGTCACAAAGTCCG
CAAGGCGCCAGTATCTAAAAACGTATACCTTGGCTTGCTTGTGAAACTCT
TTAGGTTCCTCGCGAGGCGGACGGACAGCGCTTTCGCCAAGGTGGTCCTC
AAGCGTCTGTATATGTCCAAGACCAACCGTGCGCCGATTTCCCTCTCTCG
CCTAGTGCGGTACATGAGGAACAAGGAGGAAAGCACCGCGGTTATCGTGG
GTGGCGTTACGGATGATGTGCGCCTTCTTGAAGTCCCTAAACTATCCGGT
GAGTCTTTCAAGGCCGTAAGAGCACGCCGGAATGTGATTCCAAAACTTGA
TTAA
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Coding sequence (CDS) from alignment at H-elongata_contig62316:760..1113-

>mRNA_H-elongata_contig62316.13805.1 ID=mRNA_H-elongata_contig62316.13805.1|Name=mRNA_H-elongata_contig62316.13805.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig62316:760..1113- (Himanthalia elongata Himel1 dioecious)
ATGGGTATCGATTTAGTCGCTGGTGGGCGCCGTGTGGGTCACAAAGTCCG
CAAGGCGCCAGTATCTAAAAACGTATACCTTGGCTTGCTTGTGAAACTCT
TTAGGTTCCTCGCGAGGCGGACGGACAGCGCTTTCGCCAAGGTGGTCCTC
AAGCGTCTGTATATGTCCAAGACCAACCGTGCGCCGATTTCCCTCTCTCG
CCTAGTGCGGTACATGAGGAACAAGGAGGAAAGCACCGCGGTTATCGTGG
GTGGCGTTACGGATGATGTGCGCCTTCTTGAAGTCCCTAAACTATCCGGT
GAGTCTTTCAAGGCCGTAAGAGCACGCCGGAATGTGATTCCAAAACTTGA
TTAAATGGGTATCGATTTAGTCGCTGGTGGGCGCCGTGTGGGTCACAAAG
TCCGCAAGGCGCCAGTATCTAAAAACGTATACCTTGGCTTGCTTGTGAAA
CTCTTTAGGTTCCTCGCGAGGCGGACGGACAGCGCTTTCGCCAAGGTGGT
CCTCAAGCGTCTGTATATGTCCAAGACCAACCGTGCGCCGATTTCCCTCT
CTCGCCTAGTGCGGTACATGAGGAACAAGGAGGAAAGCACCGCGGTTATC
GTGGGTGGCGTTACGGATGATGTGCGCCTTCTTGAAGTCCCTAAACTATC
CGGTGAGTCTTTCAAGGCCGTAAGAGCACGCCGGAATGTGATTCCAAAAC
TTGATTAA
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