mRNA_H-elongata_contig117742.1380.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117742.1380.1
Unique NamemRNA_H-elongata_contig117742.1380.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117742.1380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117742contigH-elongata_contig117742:190..1510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1321
Cds size861
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117742.1380.1prot_H-elongata_contig117742.1380.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117742 234..1094 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929686.609946-UTR-H-elongata_contig117742:189..2331622929686.609946-UTR-H-elongata_contig117742:189..233Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117742 190..233 +
1691679119.0878577-UTR-H-elongata_contig117742:189..2331691679119.0878577-UTR-H-elongata_contig117742:189..233Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117742 190..233 +
1622929686.6567333-UTR-H-elongata_contig117742:1094..15101622929686.6567333-UTR-H-elongata_contig117742:1094..1510Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117742 1095..1510 +
1691679119.1023488-UTR-H-elongata_contig117742:1094..15101691679119.1023488-UTR-H-elongata_contig117742:1094..1510Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117742 1095..1510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929686.63039-CDS-H-elongata_contig117742:233..10941622929686.63039-CDS-H-elongata_contig117742:233..1094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117742 234..1094 +
1691679119.0947363-CDS-H-elongata_contig117742:233..10941691679119.0947363-CDS-H-elongata_contig117742:233..1094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117742 234..1094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117742.1380.1

>prot_H-elongata_contig117742.1380.1 ID=prot_H-elongata_contig117742.1380.1|Name=mRNA_H-elongata_contig117742.1380.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=287bp
MVDVKKRCANNGCFKQPSYGVAGSKMANYCAVHALEGMVDVVKIMCTSDG
VAGSKKAKYCAVHALEGMVDVMNKRCASDGCFKKPTYGVAGSKKAMYCAV
HALEGMVDVVNKMCACDGCFKQPIYGVAGSKKAMYCALHVLEGMVDVVNK
RCGSDGCFKRPGYGVAGSKKANYCVVHGLEGMVDVKKRCACDGCLKHPSY
DVPGGKSVEFCTLHSLEVIVDIEIKRCDDYILAAQNQARTRKRMPEISAR
EESVLERERTTKFKRPYYNASSDAKSVKPELSLSLP*
back to top

mRNA from alignment at H-elongata_contig117742:190..1510+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117742.1380.1 ID=mRNA_H-elongata_contig117742.1380.1|Name=mRNA_H-elongata_contig117742.1380.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1321bp|location=Sequence derived from alignment at H-elongata_contig117742:190..1510+ (Himanthalia elongata Himel1 dioecious)
GCAGCAAGGAAGCGAAGTACTGCGCGGTGCATGCTTTGGAAGGGATGGTC
GACGTTAAGAAGAGGTGTGCTAACAATGGATGCTTCAAACAACCAAGTTA
TGGCGTGGCCGGCAGCAAAATGGCGAACTACTGCGCGGTACATGCTTTGG
AAGGGATGGTTGACGTGGTTAAAATAATGTGTACAAGTGATGGCGTGGCC
GGCAGCAAAAAAGCGAAGTACTGCGCGGTGCATGCTTTGGAAGGGATGGT
AGACGTTATGAACAAAAGGTGTGCAAGTGATGGTTGCTTTAAGAAACCAA
CTTATGGCGTGGCCGGCAGCAAGAAAGCAATGTACTGCGCGGTGCATGCT
TTGGAAGGAATGGTTGACGTGGTTAATAAGATGTGTGCATGTGATGGTTG
CTTTAAGCAACCGATTTATGGCGTAGCCGGCAGCAAGAAAGCAATGTACT
GCGCGTTGCATGTTTTGGAAGGAATGGTTGATGTGGTTAATAAGAGGTGT
GGAAGTGATGGGTGCTTTAAGCGACCAGGTTATGGCGTGGCCGGCAGCAA
AAAGGCGAATTACTGTGTGGTACATGGTTTGGAAGGGATGGTCGACGTTA
AGAAGAGGTGTGCTTGTGATGGTTGCTTAAAGCATCCGAGTTATGACGTA
CCGGGCGGCAAGAGTGTTGAGTTTTGCACGTTGCACAGTTTGGAAGTGAT
TGTCGACATTGAGATCAAGAGGTGTGATGACTATATTTTGGCTGCACAAA
ATCAGGCTAGAACCAGGAAAAGAATGCCTGAAATTAGTGCACGAGAAGAA
TCTGTTTTAGAGAGAGAGAGGACGACTAAGTTTAAACGTCCATATTATAA
CGCATCATCAGATGCAAAGAGCGTAAAACCTGAGTTGTCCTTATCTCTAC
CCTAGTGTATTATTTCTTATGAGTATACTGGAGGCCATACGGGGTTTTGG
CGCTCCAGGGCTACCAAACATCGGAAGTGCTCTCAATTAGCATGTTGCAA
CAAGCAGGGGACGGGGAGATTTGTTTGTTTCAGCAGGGGACAGGGAAATT
TGTTTGTTTCATCTGGTTAATTATGTGTGTTTGAAATGCACGGTAGAGTC
CATCCCCTTGCCAGAAAATGATTTTACTACTACGGGGGAGCGATCAATAG
TTGCGTCGCGGTTCCCATTTGCGACATCGTTGTGGCTTGTTCTTGGTTTA
TTTTGAACTGATTATTCGGTAAACGACCATTGGCAAGCCACCCTCATGTC
TCGGAAGAAAGGCGGTAGACTGGACAATATACTCCCCGTCTCGGATAAAT
TATTTACCCAGTCTAGAGTTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig117742:190..1510+

>mRNA_H-elongata_contig117742.1380.1 ID=mRNA_H-elongata_contig117742.1380.1|Name=mRNA_H-elongata_contig117742.1380.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1722bp|location=Sequence derived from alignment at H-elongata_contig117742:190..1510+ (Himanthalia elongata Himel1 dioecious)
ATGGTCGACGTTAAGAAGAGGTGTGCTAACAATGGATGCTTCAAACAACC
AAGTTATGGCGTGGCCGGCAGCAAAATGGCGAACTACTGCGCGGTACATG
CTTTGGAAGGGATGGTTGACGTGGTTAAAATAATGTGTACAAGTGATGGC
GTGGCCGGCAGCAAAAAAGCGAAGTACTGCGCGGTGCATGCTTTGGAAGG
GATGGTAGACGTTATGAACAAAAGGTGTGCAAGTGATGGTTGCTTTAAGA
AACCAACTTATGGCGTGGCCGGCAGCAAGAAAGCAATGTACTGCGCGGTG
CATGCTTTGGAAGGAATGGTTGACGTGGTTAATAAGATGTGTGCATGTGA
TGGTTGCTTTAAGCAACCGATTTATGGCGTAGCCGGCAGCAAGAAAGCAA
TGTACTGCGCGTTGCATGTTTTGGAAGGAATGGTTGATGTGGTTAATAAG
AGGTGTGGAAGTGATGGGTGCTTTAAGCGACCAGGTTATGGCGTGGCCGG
CAGCAAAAAGGCGAATTACTGTGTGGTACATGGTTTGGAAGGGATGGTCG
ACGTTAAGAAGAGGTGTGCTTGTGATGGTTGCTTAAAGCATCCGAGTTAT
GACGTACCGGGCGGCAAGAGTGTTGAGTTTTGCACGTTGCACAGTTTGGA
AGTGATTGTCGACATTGAGATCAAGAGGTGTGATGACTATATTTTGGCTG
CACAAAATCAGGCTAGAACCAGGAAAAGAATGCCTGAAATTAGTGCACGA
GAAGAATCTGTTTTAGAGAGAGAGAGGACGACTAAGTTTAAACGTCCATA
TTATAACGCATCATCAGATGCAAAGAGCGTAAAACCTGAGTTGTCCTTAT
CTCTACCCTAGATGGTCGACGTTAAGAAGAGGTGTGCTAACAATGGATGC
TTCAAACAACCAAGTTATGGCGTGGCCGGCAGCAAAATGGCGAACTACTG
CGCGGTACATGCTTTGGAAGGGATGGTTGACGTGGTTAAAATAATGTGTA
CAAGTGATGGCGTGGCCGGCAGCAAAAAAGCGAAGTACTGCGCGGTGCAT
GCTTTGGAAGGGATGGTAGACGTTATGAACAAAAGGTGTGCAAGTGATGG
TTGCTTTAAGAAACCAACTTATGGCGTGGCCGGCAGCAAGAAAGCAATGT
ACTGCGCGGTGCATGCTTTGGAAGGAATGGTTGACGTGGTTAATAAGATG
TGTGCATGTGATGGTTGCTTTAAGCAACCGATTTATGGCGTAGCCGGCAG
CAAGAAAGCAATGTACTGCGCGTTGCATGTTTTGGAAGGAATGGTTGATG
TGGTTAATAAGAGGTGTGGAAGTGATGGGTGCTTTAAGCGACCAGGTTAT
GGCGTGGCCGGCAGCAAAAAGGCGAATTACTGTGTGGTACATGGTTTGGA
AGGGATGGTCGACGTTAAGAAGAGGTGTGCTTGTGATGGTTGCTTAAAGC
ATCCGAGTTATGACGTACCGGGCGGCAAGAGTGTTGAGTTTTGCACGTTG
CACAGTTTGGAAGTGATTGTCGACATTGAGATCAAGAGGTGTGATGACTA
TATTTTGGCTGCACAAAATCAGGCTAGAACCAGGAAAAGAATGCCTGAAA
TTAGTGCACGAGAAGAATCTGTTTTAGAGAGAGAGAGGACGACTAAGTTT
AAACGTCCATATTATAACGCATCATCAGATGCAAAGAGCGTAAAACCTGA
GTTGTCCTTATCTCTACCCTAG
back to top