mRNA_H-elongata_contig62261.13795.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62261.13795.1
Unique NamemRNA_H-elongata_contig62261.13795.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig62261.13795.1 vs. uniprot
Match: A0A6H5KU09_9PHAE (Peroxin-7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU09_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 3.690e-37
Identity = 58/79 (73.42%), Postives = 66/79 (83.54%), Query Frame = 2
Query:    2 GAVKLWDLEAEEAFPLASWREHTQDVSGVDWNLVSKDSFGSASWDGTVRLWQPGAPASTRTFSDHGQHPVYGAVWSPFS 238
            G VKLWDL A + FP+A WREHTQ+VSGVDWNLVSKD F SASWDG+V+LW P A  S+ TF DHG+HPVYGA+WSPFS
Sbjct:   93 GQVKLWDLGAVDGFPVADWREHTQEVSGVDWNLVSKDLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVYGAIWSPFS 171          
BLAST of mRNA_H-elongata_contig62261.13795.1 vs. uniprot
Match: D7FIF0_ECTSI (Peroxin-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIF0_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 2.050e-30
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 2
Query:    2 GAVKLWDLEAEEAFPLASWREHTQDVSGVDWNLVSKDSFGSASWDGTVRLWQPGAPASTRTFSDHGQHPVYG 217
            G VKLWDL A + FP+A WREHTQ+VSGVDWNLVSK  F SASWDG+V+LW P A  S+ TF DHG+HPVYG
Sbjct:   96 GVVKLWDLGAADGFPVADWREHTQEVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVYG 167          
BLAST of mRNA_H-elongata_contig62261.13795.1 vs. uniprot
Match: A0A6G0WPL4_9STRA (Peroxin-7 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPL4_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.500e-24
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 2
Query:    2 GAVKLWDLEAEEAFPLASWREHTQDVSGVDWNLVSKDSFGSASWDGTVRLWQPGAPASTRTFSDHGQHPVYGAVWSPFSASQLLSFSGDGTARVLDVNARAAAVVVSRVH 331
            G +KL+D+  ++AFP+ S+ EHT ++ GV+WNLV + +F SASWD T+++W P    S +T   H   PVY AVWS    + + S SGDG+ R+ D+NA   A+V    H
Sbjct:   86 GHLKLFDVTTQDAFPIQSYTEHTAEIGGVNWNLVERQTFCSASWDQTIKIWHPHRVQSLQTLHGH-TGPVYNAVWSTRDTNMIASCSGDGSVRLWDLNAPQQAIVRIPAH 194          
BLAST of mRNA_H-elongata_contig62261.13795.1 vs. uniprot
Match: A0A7D8UIB9_9HELO (Peroxin-7 n=4 Tax=Lachnellula TaxID=47830 RepID=A0A7D8UIB9_9HELO)

HSP 1 Score: 96.7 bits (239), Expect = 1.370e-21
Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 2
Query:    2 GAVKLWDLEAEEAFPLASWREHTQDVSGVDWNLVSKDSFGSASWDGTVRLWQPGAPASTRTFSDHGQHPVYGAVWSPFSASQLLSFSGDGTARVLDVNARAAA 310
            G+VKL+DL   + FP+ +W+EH ++V  V WNLVSKD+F S+SWDGT+++W P    S  T   H     Y   WSP S S L S S D   R+ D+   A+A
Sbjct:   81 GSVKLFDLNVND-FPVKTWKEHNREVYAVHWNLVSKDTFASSSWDGTIKIWSPERDTSILTLPTHSC--TYSTAWSPHSPSILSSVSSDSHCRIFDLRTPASA 180          
BLAST of mRNA_H-elongata_contig62261.13795.1 vs. uniprot
Match: A0A8H3EWP4_9LECA (Peroxin-7 n=4 Tax=Parmeliaceae TaxID=78060 RepID=A0A8H3EWP4_9LECA)

HSP 1 Score: 96.3 bits (238), Expect = 1.970e-21
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 2
Query:    2 GAVKLWDLEAEEAFPLASWREHTQDVSGVDWNLVSKDSFGSASWDGTVRLWQPGAPASTRTFSDHGQHPVYGAVWSPFSASQLLSFSGDGTARVLDVNARAAA 310
            G+VKL+D+  +E FP+ SW+EH ++V  V WNLVSKD+F S+SWDGT+R+W P  P S  T   H     Y A +SP S S L S S D   R+ D+   A+A
Sbjct:   82 GSVKLFDIGIDE-FPIQSWKEHMREVFAVHWNLVSKDTFCSSSWDGTIRVWNPNRPTSLFTLPIHSC--TYSASFSPHSPSLLSSVSSDSQFRLFDLRTPASA 181          
BLAST of mRNA_H-elongata_contig62261.13795.1 vs. uniprot
Match: A0A2B4RMY4_STYPI (Peroxin-7 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RMY4_STYPI)

HSP 1 Score: 92.4 bits (228), Expect = 9.930e-21
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 2
Query:    2 GAVKLWDLEAEEAFPLASWREHTQDVSGVDWNLVSK-DSFGSASWDGTVRLWQPGAPASTRTFSDHGQHPVYGAVWSPFSASQLLSFSGDGTARVLDVNARAAAVVVSRVH 331
            G++++WDL+  +  P+   +EH+ +V GVDW+   + D F SASWD +++LW P    S  TF+DH QH VY AVWSP       S SGD T R+ D++A   A    R H
Sbjct:  115 GSIQMWDLKNPKG-PIKVCKEHSAEVYGVDWSCNRQLDQFLSASWDHSIKLWDPNGAQSLATFADH-QHVVYSAVWSPHVPRTFASASGDNTLRIWDISAPPHAQQTIRAH 223          
BLAST of mRNA_H-elongata_contig62261.13795.1 vs. uniprot
Match: A0A4P9YYE3_9FUNG (Peroxin-7 (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YYE3_9FUNG)

HSP 1 Score: 92.8 bits (229), Expect = 1.060e-20
Identity = 48/97 (49.48%), Postives = 58/97 (59.79%), Query Frame = 2
Query:    2 GAVKLWDLEAEEAFPLASWREHTQDVSGVDWNLVSKDSFGSASWDGTVRLWQPGAPASTRTFSDHGQHPVYGAVWSPFSASQLLSFSGDGTARVLDV 292
            G++KLWD+   E FP+  W EHT++V  V+WNL+ KD+F SASWD T   W P    S  TF  H QH VY A+WSP  A    S  GD   RV DV
Sbjct:   84 GSIKLWDITLSE-FPIQHWTEHTKEVYSVNWNLIRKDTFLSASWDLT---WLPERRESLATFGAH-QHCVYEAIWSPHEADVFASACGDRIVRVWDV 175          
BLAST of mRNA_H-elongata_contig62261.13795.1 vs. uniprot
Match: A0A2B4RKC5_STYPI (Peroxin-7 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RKC5_STYPI)

HSP 1 Score: 95.5 bits (236), Expect = 1.210e-20
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = 2
Query:    2 GAVKLWDLEAEEAFPLASWREHTQDVSGVDWNLVSK-DSFGSASWDGTVRLWQPGAPASTRTFSDHGQHPVYGAVWSPFSASQLLSFSGDGTARVLDVNARAAAVVVSRVH 331
            G++++WDL+  +  P+   +EH+ +V GVDWN   + D F SASWD +++LW P    S  TF+DH QH VY AVWSP  +    S SGD T R+ D++A   A    R H
Sbjct:  649 GSIQMWDLKNPKG-PIKVCKEHSAEVYGVDWNCNRQLDQFLSASWDHSIKLWDPNGAQSLATFADH-QHVVYSAVWSPHVSRTFASASGDNTLRIWDISAPPRAQQTIRAH 757          
BLAST of mRNA_H-elongata_contig62261.13795.1 vs. uniprot
Match: UPI001D04AAD4 (uncharacterized protein n=1 Tax=Bacidia gigantensis TaxID=2732470 RepID=UPI001D04AAD4)

HSP 1 Score: 94.0 bits (232), Expect = 1.310e-20
Identity = 45/103 (43.69%), Postives = 65/103 (63.11%), Query Frame = 2
Query:    2 GAVKLWDLEAEEAFPLASWREHTQDVSGVDWNLVSKDSFGSASWDGTVRLWQPGAPASTRTFSDHGQHPVYGAVWSPFSASQLLSFSGDGTARVLDVNARAAA 310
            G++KL+D+  +  FP+ SW+EH ++V  V+WNLVSKDSF S+SWDGT+++W P  P S  T   H     Y A +SP + S L + S D   R+ D+   A+A
Sbjct:   82 GSIKLFDIGVD-TFPVQSWQEHNREVFAVNWNLVSKDSFCSSSWDGTIKVWSPDRPTSLLTLPTHSC--TYSAAFSPHNPSLLSAVSSDSHLRLFDLRTPASA 181          
BLAST of mRNA_H-elongata_contig62261.13795.1 vs. uniprot
Match: A0A3M6TX64_POCDA (Peroxin-7 (Fragment) n=4 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6TX64_POCDA)

HSP 1 Score: 92.4 bits (228), Expect = 1.670e-20
Identity = 44/100 (44.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:    2 GAVKLWDLEAEEAFPLASWREHTQDVSGVDWNLVSK-DSFGSASWDGTVRLWQPGAPASTRTFSDHGQHPVYGAVWSPFSASQLLSFSGDGTARVLDVNA 298
            G++++WDL+  +  P+   +EH+ +V GVDW+   + D F SASWD +++LW P    S  TF+DH QH VY AVWSP  +    S SGD T R+ D++A
Sbjct:   83 GSIQMWDLKNPKG-PIKVCKEHSAEVYGVDWSCNRQLDQFLSASWDHSIKLWDPNGAQSLATFADH-QHVVYSAVWSPHVSRTFASVSGDNTLRIWDISA 180          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62261.13795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU09_9PHAE3.690e-3773.42Peroxin-7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxI... [more]
D7FIF0_ECTSI2.050e-3070.83Peroxin-7 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6G0WPL4_9STRA1.500e-2443.64Peroxin-7 n=1 Tax=Aphanomyces euteiches TaxID=1008... [more]
A0A7D8UIB9_9HELO1.370e-2144.66Peroxin-7 n=4 Tax=Lachnellula TaxID=47830 RepID=A0... [more]
A0A8H3EWP4_9LECA1.970e-2147.57Peroxin-7 n=4 Tax=Parmeliaceae TaxID=78060 RepID=A... [more]
A0A2B4RMY4_STYPI9.930e-2142.34Peroxin-7 n=1 Tax=Stylophora pistillata TaxID=5042... [more]
A0A4P9YYE3_9FUNG1.060e-2049.48Peroxin-7 (Fragment) n=1 Tax=Syncephalis pseudoplu... [more]
A0A2B4RKC5_STYPI1.210e-2043.24Peroxin-7 n=1 Tax=Stylophora pistillata TaxID=5042... [more]
UPI001D04AAD41.310e-2043.69uncharacterized protein n=1 Tax=Bacidia gigantensi... [more]
A0A3M6TX64_POCDA1.670e-2044.00Peroxin-7 (Fragment) n=4 Tax=Pocilloporidae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62261contigH-elongata_contig62261:374..1700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-28_000040.3
Hectar predicted targeting categoryother localisation
Exons3
Model size335
Cds size333
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62261.13795.1prot_H-elongata_contig62261.13795.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62261 374..1700 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931003.9871116-CDS-H-elongata_contig62261:373..4911622931003.9871116-CDS-H-elongata_contig62261:373..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62261 374..491 -
1691679658.5044394-CDS-H-elongata_contig62261:373..4911691679658.5044394-CDS-H-elongata_contig62261:373..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62261 374..491 -
1622931004.0034428-CDS-H-elongata_contig62261:899..10401622931004.0034428-CDS-H-elongata_contig62261:899..1040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62261 900..1040 -
1691679658.5136428-CDS-H-elongata_contig62261:899..10401691679658.5136428-CDS-H-elongata_contig62261:899..1040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62261 900..1040 -
1622931004.0238872-CDS-H-elongata_contig62261:1626..17001622931004.0238872-CDS-H-elongata_contig62261:1626..1700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62261 1627..1700 -
1691679658.522438-CDS-H-elongata_contig62261:1626..17001691679658.522438-CDS-H-elongata_contig62261:1626..1700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62261 1627..1700 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62261.13795.1

>prot_H-elongata_contig62261.13795.1 ID=prot_H-elongata_contig62261.13795.1|Name=mRNA_H-elongata_contig62261.13795.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
WRGEALGFGGRGGVSLGKLEGTHARRLRRGLEPGLQGQFRVSFVGRHRAP
LATRRPGVNAYVFRPWTTPCVRRCVVSLQRLAAAVFLRRRHRPRAGRQRA
SGRGRSESSP*
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mRNA from alignment at H-elongata_contig62261:374..1700-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62261.13795.1 ID=mRNA_H-elongata_contig62261.13795.1|Name=mRNA_H-elongata_contig62261.13795.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1327bp|location=Sequence derived from alignment at H-elongata_contig62261:374..1700- (Himanthalia elongata Himel1 dioecious)
TGGCGCGGTGAAGCTTTGGGATTTGGAGGCAGAGGAGGCGTTTCCCTTGG CAAGCTGGAGGGAACACACGCAAGGTGCCACACCTATTAATTCATGTTGT GAAATGAGTGCAGCACACAACTGCTCTACTTGTATACCAAATTTGAGTAC TGCGTGTTGTACAACAGCATCATGGCCGCCTTTGATAGGGTTGGGATATG TATCCACTCTTTCGGACCCCCCCCGGTTTTCCTCTTTGGAAGAGGCGTTT CATTGCTAGTATTAGAGCGAAGAGCGAAGATAGAATTCACGGGATACGTA CCGCACTGCTAATCAGTAAAAGCTGGGCTAAGAGCGAGCATTGCATTACC ATTTGCATCGCCACCCGCACCCCAGAGAGGAGGGAATCACAGGCGTTTTC TCTCGTTGGGCCGCGCGCGATGAGACGGGAAAACGGTATCTTTCCGTAAA ATATTGCGGAATACCGATTTCGCGGAGTGACGTCTGTGCCAGCGGATCAA GGGCGGACGGACTTGATTTCGGAACGAACGGCGTTTCCTTTTTGAAGTTG TATTATTTATACCCTTCTATTTTATACTATAGTATACATTACTATCCTAT ACCGGTACTATAGTATACTGTGCTTTGTTTTAACCATGCTTCGTCGGCGA CGAACGGCAGACGTCTCCGGCGTGGACTGGAACCTGGTCTCCAAGGACAG TTTCGGGTCAGCTTCGTGGGACGGCACCGTGCGCCTCTGGCAACCAGGCG CCCCGGCGTCAACGCGTACGTTTTCCGACCATGGACAACACCCTGTGTAC GGTAAGCGGACGGCAAGCGGCTGCGGTCGGATCGATGCAAAAGTTGACAT GTTATTTAGCTGTCCGGGTGAATCCCATGCCTTTTTGCTTGGATTTTTTG AGCGATGTCTTCCCGTCTCCGAAATAGATCGTAATAATCAAACATGCGCT TCGTGCATATGTTTGAGTTGAGAGATCGCCACGCGACGGACGAGGGAAGA GAGGACGAGGGCGTGCGATTTCCAGGCGGTTCGAAGTAACGAGCGGTCGC GACTGCGGACGGATCGTATTTGTGTGCTAGACCTATACTACACGTGTATT GCTTGTTAATTAGTCTACAGTATAGACTAATAGTCTAATGGTATCGCCTC AAGGGAAACAAGCATGGAGATTCCGTCGATCCCTGTCGCCCGATGTCGTC CCTCCCAAGGCGCTGTGTGGTCTCCCTTCAGCGCCTCGCAGCTGCTGTCT TTCTCAGGAGACGGCACCGCCCGCGTGCTGGACGTCAACGCGCGAGCGGC CGCGGTCGTAGTGAGTCGAGTCCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig62261:374..1700-

>mRNA_H-elongata_contig62261.13795.1 ID=mRNA_H-elongata_contig62261.13795.1|Name=mRNA_H-elongata_contig62261.13795.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig62261:374..1700- (Himanthalia elongata Himel1 dioecious)
TGGCGCGGTGAAGCTTTGGGATTTGGAGGCAGAGGAGGCGTTTCCCTTGG
CAAGCTGGAGGGAACACACGCAAGTGGCGCGGTGAAGCTTTGGGATTTGG
AGGCAGAGGAGGCGTTTCCCTTGGCAAGCTGGAGGGAACACACGCAAGAC
GTCTCCGGCGTGGACTGGAACCTGGTCTCCAAGGACAGTTTCGGGTCAGC
TTCGTGGGACGGCACCGTGCGCCTCTGGCAACCAGGCGCCCCGGCGTCAA
CGCGTACGTTTTCCGACCATGGACAACACCCTGTGTACGACGTCTCCGGC
GTGGACTGGAACCTGGTCTCCAAGGACAGTTTCGGGTCAGCTTCGTGGGA
CGGCACCGTGCGCCTCTGGCAACCAGGCGCCCCGGCGTCAACGCGTACGT
TTTCCGACCATGGACAACACCCTGTGTACGGCGCTGTGTGGTCTCCCTTC
AGCGCCTCGCAGCTGCTGTCTTTCTCAGGAGACGGCACCGCCCGCGTGCT
GGACGTCAACGCGCGAGCGGCCGCGGTCGTAGTGAGTCGAGTCCATGAGC
GCTGTGTGGTCTCCCTTCAGCGCCTCGCAGCTGCTGTCTTTCTCAGGAGA
CGGCACCGCCCGCGTGCTGGACGTCAACGCGCGAGCGGCCGCGGTCGTAG
TGAGTCGAGTCCATGA
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