mRNA_H-elongata_contig62249.13794.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62249.13794.1
Unique NamemRNA_H-elongata_contig62249.13794.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62249.13794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62249contigH-elongata_contig62249:1635..2032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size400
Cds size342
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931003.9161708-UTR-H-elongata_contig62249:1634..16901622931003.9161708-UTR-H-elongata_contig62249:1634..1690Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62249 1635..1690 +
1691679658.48009-UTR-H-elongata_contig62249:1634..16901691679658.48009-UTR-H-elongata_contig62249:1634..1690Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62249 1635..1690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931003.9332926-CDS-H-elongata_contig62249:1690..20321622931003.9332926-CDS-H-elongata_contig62249:1690..2032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62249 1691..2032 +
1691679658.4919288-CDS-H-elongata_contig62249:1690..20321691679658.4919288-CDS-H-elongata_contig62249:1690..2032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62249 1691..2032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62249.13794.1prot_H-elongata_contig62249.13794.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62249 1691..2032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62249.13794.1

>prot_H-elongata_contig62249.13794.1 ID=prot_H-elongata_contig62249.13794.1|Name=mRNA_H-elongata_contig62249.13794.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MKQRSAPCSAVLRHPPLSWAAIVHYSALIAKAPRSSGRHPINSSFIPKER
KKHTNIIPLQTRVHYFFKSKKKAARIALQAEPRVLPVGAAIIVIEQDAYI
IRERTLSALRRPYC
back to top

mRNA from alignment at H-elongata_contig62249:1635..2032+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62249.13794.1 ID=mRNA_H-elongata_contig62249.13794.1|Name=mRNA_H-elongata_contig62249.13794.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=398bp|location=Sequence derived from alignment at H-elongata_contig62249:1635..2032+ (Himanthalia elongata Himel1 dioecious)
ATTGCTGCTTGCCATAGTTCATCCCTGACGTTTTCTGCAGCGATCCATTT
TTCATCATGAAACAACGTTCCGCCCCTTGTTCCGCCGTCTTGCGCCATCC
CCCTTTGTCCTGGGCTGCAATCGTCCACTATTCGGCATTGATCGCGAAAG
CTCCGAGGTCCTCCGGAAGACACCCCATCAACTCTTCTTTTATTCCCAAG
GAAAGGAAAAAACATACAAATATTATTCCTTTACAAACAAGAGTGCATTA
CTTTTTTAAAAGTAAAAAAAAAGCGGCACGCATCGCTCTTCAAGCAGAAC
CACGTGTTCTTCCCGTGGGTGCCGCTATTATCGTCATTGAACAAGATGCC
TACATTATACGAGAGAGAACACTTAGTGCGCTTCGCAGGCCCTATTGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig62249:1635..2032+

>mRNA_H-elongata_contig62249.13794.1 ID=mRNA_H-elongata_contig62249.13794.1|Name=mRNA_H-elongata_contig62249.13794.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig62249:1635..2032+ (Himanthalia elongata Himel1 dioecious)
ATGAAACAACGTTCCGCCCCTTGTTCCGCCGTCTTGCGCCATCCCCCTTT
GTCCTGGGCTGCAATCGTCCACTATTCGGCATTGATCGCGAAAGCTCCGA
GGTCCTCCGGAAGACACCCCATCAACTCTTCTTTTATTCCCAAGGAAAGG
AAAAAACATACAAATATTATTCCTTTACAAACAAGAGTGCATTACTTTTT
TAAAAGTAAAAAAAAAGCGGCACGCATCGCTCTTCAAGCAGAACCACGTG
TTCTTCCCGTGGGTGCCGCTATTATCGTCATTGAACAAGATGCCTACATT
ATACGAGAGAGAACACTTAGTGCGCTTCGCAGGCCCTATTGCATGAAACA
ACGTTCCGCCCCTTGTTCCGCCGTCTTGCGCCATCCCCCTTTGTCCTGGG
CTGCAATCGTCCACTATTCGGCATTGATCGCGAAAGCTCCGAGGTCCTCC
GGAAGACACCCCATCAACTCTTCTTTTATTCCCAAGGAAAGGAAAAAACA
TACAAATATTATTCCTTTACAAACAAGAGTGCATTACTTTTTTAAAAGTA
AAAAAAAAGCGGCACGCATCGCTCTTCAAGCAGAACCACGTGTTCTTCCC
GTGGGTGCCGCTATTATCGTCATTGAACAAGATGCCTACATTATACGAGA
GAGAACACTTAGTGCGCTTCGCAGGCCCTATTGC
back to top