prot_H-elongata_contig6224.13793.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6224.13793.1
Unique Nameprot_H-elongata_contig6224.13793.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length192
Homology
[Close]
BLAST of mRNA_H-elongata_contig6224.13793.1 vs. uniprot
Match: A0A6H5JYW2_9PHAE (SH2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYW2_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 2.020e-45
Identity = 108/196 (55.10%), Postives = 129/196 (65.82%), Query Frame = 0 
Query:    4 LLKKGRGPDPRWRRDFGGRGIGAHDQEKEAGVGEDPGWRYFAGRAGREEAEALLRGRAEGTFFLRRKGPSLLVLSYVAKSIPTPSPGGGRKSAGSPYPGSSTTSTINSTIAITSP-------IPAGARGGRGGSLAGAGRRSPCGKNPLQHALLVYDGGFFSDERGRLGRFSTLEELLKSKISGLARYPLSFRRRR 192
            LL++GRGPDP WR+      +           G DPGWR+FAGR GREEAEALLRGR +GTFFLRRKGPSLLVL+YVA S   P+      +A +P  G+     + S  A  SP        P G + G+G SL G  R S  G   +QHALL+++GGFFSDE+GRLGRFSTLEELLKSKIS +AR+PLSFRR R
Sbjct:  310 LLERGRGPDPSWRQGVPRDSLAVATVGDGDASGRDPGWRHFAGRMGREEAEALLRGRPDGTFFLRRKGPSLLVLTYVA-SAKRPN-----CNANTPTSGAR---NLKSYPANRSPRMREMVGSPQGEKLGKGLSLEGV-RDSLAGSTLVQHALLMHEGGFFSDEKGRLGRFSTLEELLKSKISAIARHPLSFRRER 495
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6224.13793.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JYW2_9PHAE2.020e-4555.10SH2 domain-containing protein n=2 Tax=Ectocarpus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036860SH2 domain superfamilySUPERFAMILY55550SH2 domaincoord: 41..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6224contigH-elongata_contig6224:1645..10876 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6224.13793.1mRNA_H-elongata_contig6224.13793.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6224 1633..10876 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6224.13793.1 ID=prot_H-elongata_contig6224.13793.1|Name=mRNA_H-elongata_contig6224.13793.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp
MMELLKKGRGPDPRWRRDFGGRGIGAHDQEKEAGVGEDPGWRYFAGRAGR
EEAEALLRGRAEGTFFLRRKGPSLLVLSYVAKSIPTPSPGGGRKSAGSPY
PGSSTTSTINSTIAITSPIPAGARGGRGGSLAGAGRRSPCGKNPLQHALL
VYDGGFFSDERGRLGRFSTLEELLKSKISGLARYPLSFRRRR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036860SH2_dom_sf