mRNA_H-elongata_contig62211.13791.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62211.13791.1
Unique NamemRNA_H-elongata_contig62211.13791.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62211.13791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62211contigH-elongata_contig62211:1042..2593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size298
Cds size297
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62211.13791.1prot_H-elongata_contig62211.13791.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62211 1042..2593 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931003.6256192-CDS-H-elongata_contig62211:1041..10801622931003.6256192-CDS-H-elongata_contig62211:1041..1080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62211 1042..1080 -
1691679658.369265-CDS-H-elongata_contig62211:1041..10801691679658.369265-CDS-H-elongata_contig62211:1041..1080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62211 1042..1080 -
1622931003.6400273-CDS-H-elongata_contig62211:1797..19021622931003.6400273-CDS-H-elongata_contig62211:1797..1902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62211 1798..1902 -
1691679658.3798935-CDS-H-elongata_contig62211:1797..19021691679658.3798935-CDS-H-elongata_contig62211:1797..1902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62211 1798..1902 -
1622931003.656023-CDS-H-elongata_contig62211:2440..25931622931003.656023-CDS-H-elongata_contig62211:2440..2593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62211 2441..2593 -
1691679658.3931806-CDS-H-elongata_contig62211:2440..25931691679658.3931806-CDS-H-elongata_contig62211:2440..2593Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62211 2441..2593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62211.13791.1

>prot_H-elongata_contig62211.13791.1 ID=prot_H-elongata_contig62211.13791.1|Name=mRNA_H-elongata_contig62211.13791.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
GNTGASLSPGGRGRAGQVAAEDLALLTSAVLSGVMAATASGLDRALALIK
KGRARRSGDGHGHLVVAAKLITMDGDSAEGIGIRTKARATGELVFVDMG
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mRNA from alignment at H-elongata_contig62211:1042..2593-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62211.13791.1 ID=mRNA_H-elongata_contig62211.13791.1|Name=mRNA_H-elongata_contig62211.13791.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1552bp|location=Sequence derived from alignment at H-elongata_contig62211:1042..2593- (Himanthalia elongata Himel1 dioecious)
GGTAATACGGGTGCAAGCCTGTCGCCGGGAGGGCGAGGGAGAGCGGGACA
AGTGGCAGCAGAGGATCTGGCTCTGCTGACGTCGGCCGTGTTATCGGGAG
TGATGGCAGCTACGGCAAGCGGGCTTGATCGAGCACTTGCTCTCATCAAA
AAGGTAAGATTCGATAATTTCTGCCCTTTTAGCCCTGCGGAGATATATTG
GGAGGGGGAGTGATGAGGAAATTGTCCTGCAAGGGTGTCCGAGAGCGAGG
AAGGAGGTTTTTGTTACTACCGACCGATGACGGCTACTTCTCCATACGTT
CATCCCACGTCGTGCGCCGGCTTCGCAACACCGCGACGACGGGGCATGTT
GGGACAGTGGAGCCAGGGTACGCCAGGGTACGACTCCTTCTAGCACTGGA
TTGAGAATGAAGACTTAGCCGCTCTCCTCCGTAACGTCCACTGGGATCAT
CGTCTCCTCCATAACTTCCGTAGTTTTTCATTGGGAGCGAGCGAGCGAGC
GCGTGTGTATCGTGTGTGCCGTGATTGCCATGTGTGTGTGTATGCGTGTG
TGATTGCGCACCAGTAGGATATATACGAATATTCCTTCGACGTTGCTGGC
GAGGGTGACCTCGTCGTCCTCGTATTTGATCGATGACTGGTGACTGATGA
CCGGTGTTACTCTCTCTGCCCCCGTCGCCGCTATGATACAGGGCCGAGCG
AGGCGCTCGGGGGACGGGCACGGGCACCTCGTGGTCGCCGCGAAGCTCAT
CACCATGGACGGCGATTCAGCCGAAGGAATAGGGATAAGAACAAAGGTGG
GTTGATGTTCATTTCGTCGAGATCATGTAAATATATGGATGGATTGGCTA
ACAGCGAGGTGCAACAAATATTGCTATAAGGTATAAGATACTATTCCGTC
TTCCCGAGAAAAAGGCCCTCGACGCTATTAACAGCCCTAATAGCCCTGCC
ACGATTCTTATCATGTGATGATTAAATAAGTAACGAGACTCTATTAATAG
TTGCCTCCCCGGCCCGCTCGATCTAGGCAACACCGAGCGTTCACAGCACC
GCAAACGCTGAGTGCGTCCACGTATGCGCGACGCGGTGTCGTCCATCATT
TCCTATGGACTACCCCTCCCCTCCTCCCTCCTCCGTGGCAATGCCGGCAT
ACTAACATACTAACATATTTTGAGGCGGAGATTCAACGCCTCAAGTAACA
GTCTCTTAAGAAATATCCACCCTTTGTTTTCATGGGCCGTCCAGCGCAGA
TGACTTCACGCCCCTATGTGACGTCACGCATCTGTATCTTACGAAGTATA
TCCTCATCACTCTCATCACTCTCGAGTGCAGTCCATATAGTAATAGTAAT
AGTAGTAGACCCTACCCTTGAGAAGTACACGGTAGTATTTACGATTGCTT
GTTTGGATGATAAGCCTTAGAAAGCGATGATCGATTAACATTATCTCGCA
AAGGAACACCCGATACGCCATAATATTAATATCACGTTTTTATTTTCCTC
CCGCGTCGCACAGGCACGGGCAACAGGAGAGCTAGTGTTCGTCGACATGG
GC
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Coding sequence (CDS) from alignment at H-elongata_contig62211:1042..2593-

>mRNA_H-elongata_contig62211.13791.1 ID=mRNA_H-elongata_contig62211.13791.1|Name=mRNA_H-elongata_contig62211.13791.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig62211:1042..2593- (Himanthalia elongata Himel1 dioecious)
GGTAATACGGGTGCAAGCCTGTCGCCGGGAGGGCGAGGGAGAGCGGGACA
AGTGGCAGCAGAGGATCTGGCTCTGCTGACGTCGGCCGTGTTATCGGGAG
TGATGGCAGCTACGGCAAGCGGGCTTGATCGAGCACTTGCTCTCATCAAA
AAGGGTAATACGGGTGCAAGCCTGTCGCCGGGAGGGCGAGGGAGAGCGGG
ACAAGTGGCAGCAGAGGATCTGGCTCTGCTGACGTCGGCCGTGTTATCGG
GAGTGATGGCAGCTACGGCAAGCGGGCTTGATCGAGCACTTGCTCTCATC
AAAAAGGGCCGAGCGAGGCGCTCGGGGGACGGGCACGGGCACCTCGTGGT
CGCCGCGAAGCTCATCACCATGGACGGCGATTCAGCCGAAGGAATAGGGA
TAAGAACAAAGGGCCGAGCGAGGCGCTCGGGGGACGGGCACGGGCACCTC
GTGGTCGCCGCGAAGCTCATCACCATGGACGGCGATTCAGCCGAAGGAAT
AGGGATAAGAACAAAGGCACGGGCAACAGGAGAGCTAGTGTTCGTCGACA
TGGGCGCACGGGCAACAGGAGAGCTAGTGTTCGTCGACATGGGC
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