mRNA_H-elongata_contig62207.13790.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62207.13790.1
Unique NamemRNA_H-elongata_contig62207.13790.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62207.13790.1 vs. uniprot
Match: D7FVC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC4_ECTSI)

HSP 1 Score: 293 bits (751), Expect = 4.900e-89
Identity = 136/164 (82.93%), Postives = 150/164 (91.46%), Query Frame = 1 
Query:    1 AGFDSYLSSKWVVISEGGQLVSSA-DSGHSHSLVHQCLHRGTWSWELALERESSGDETTCVGVAVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRNHVACKIHPQDAVRMTLNCEAGTLSLEVNGVDQGVAFANIPRDVHPAVCFYGITKSVRLVELKRVYGD 489
            A FD  LSSKWVV+SE GQLVSSA D+GH+HSL+HQCL RGTWSWELALERESSGDETTCVGVAVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRN V  KIHP D+VR+TLNCE GTL+LEVNGVDQGV F+N+P +VHPAVCFYG+ KSVRLVELKR++G+
Sbjct:  395 AAFDPALSSKWVVVSEAGQLVSSAADNGHTHSLLHQCLRRGTWSWELALERESSGDETTCVGVAVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRNRVTRKIHPLDSVRLTLNCECGTLNLEVNGVDQGVVFSNVPPEVHPAVCFYGVAKSVRLVELKRIFGE 558
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BLAST of mRNA_H-elongata_contig62207.13790.1 vs. uniprot
Match: A0A6H5KD94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD94_9PHAE)

HSP 1 Score: 291 bits (746), Expect = 2.300e-88
Identity = 136/164 (82.93%), Postives = 150/164 (91.46%), Query Frame = 1 
Query:    1 AGFDSYLSSKWVVISEGGQLVSSA-DSGHSHSLVHQCLHRGTWSWELALERESSGDETTCVGVAVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRNHVACKIHPQDAVRMTLNCEAGTLSLEVNGVDQGVAFANIPRDVHPAVCFYGITKSVRLVELKRVYGD 489
            A FD  LSSKWVV+SE GQLVSSA D+G+SHSL+HQCL RGTWSWELALERESSGDETTCVGVAVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRN +  KIHP D+VR+TLNCE GTLSLEVNGVDQGV F+N+P +VHPAVCFYG+ KSVRLVELKR++G+
Sbjct:  269 AAFDPALSSKWVVVSEEGQLVSSAADNGYSHSLLHQCLRRGTWSWELALERESSGDETTCVGVAVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRNRMTRKIHPLDSVRLTLNCECGTLSLEVNGVDQGVVFSNVPPEVHPAVCFYGVAKSVRLVELKRIFGE 432
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BLAST of mRNA_H-elongata_contig62207.13790.1 vs. uniprot
Match: A0A7S1C7A9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7A9_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.330e-20
Identity = 48/132 (36.36%), Postives = 76/132 (57.58%), Query Frame = 1 
Query:   88 HSLVHQCLHRGTWSWELALERESSGDETTCVGVAVNPVTNSCYEDSHQMWMVRCYSGETYSNGG--RRNHVACKIHPQDAVRMTLNCEAGTLSLEVNGVDQGVAFANIPR-DVHPAVCFYGITKSVRLVELK 474
            +SL++   + GT  WE  L+R+  GDE +  GVA  P+T+  Y+ +   WM+R Y+G TY+     +      KIH  + VR TL+C+AGTL++ +NG DQGV F N+    ++P   FY   + + +  L+
Sbjct:  487 YSLLNVGFNSGTVVWEAHLDRDVDGDEYSLFGVARKPMTSPGYDGNPNTWMIRSYNGVTYAPSAEYKAQSSVAKIHQGNVVRFTLDCDAGTLAVNINGADQGVVFQNLQGITLYPCAMFYSGNRKISIRSLR 618
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BLAST of mRNA_H-elongata_contig62207.13790.1 vs. uniprot
Match: A0A7S0JWR0_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JWR0_CAFRO)

HSP 1 Score: 90.5 bits (223), Expect = 3.980e-18
Identity = 49/152 (32.24%), Postives = 77/152 (50.66%), Query Frame = 1 
Query:   49 GGQLVSSADSGHSHSLVHQCLHRGTWSWELALERESSGDETTCVGVAVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRNHVACKIHPQDAVRMTLNCEAGTLSLEVNGVDQG---VAFANIP-RDVHPAVCFYGITKSVRLVELKRVYGDS 492
            G ++  S  S  ++ +    + +G  +WE  +  ++ GDE TCVG    PV++  Y++S  MWMVRCY+G  Y NG   +     IHP + VR   N  AGT+ + ++   Q      F  +  + ++PAVC Y   K++R    K   G S
Sbjct:  313 GDRVWCSTGSSDNYGMATTGVRKGVATWEFEIVSDNHGDEQTCVGFVRRPVSDHRYQNSDDMWMVRCYNGGVYHNG--MSSSVSNIHPGNVVRFKANMTAGTVHMWIDDEPQNGGDPVFTGLTGQTIYPAVCGYSRDKTIRFKSFKTEGGGS 462
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BLAST of mRNA_H-elongata_contig62207.13790.1 vs. uniprot
Match: A0A5A8CKN7_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CKN7_CAFRO)

HSP 1 Score: 89.0 bits (219), Expect = 1.640e-17
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 1 
Query:   49 GGQLVSSADSGHSHSLVHQCLHRGTWSWELALERESSGDETTCVGVAVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRNHVACKIHPQDAVRMTLNCEAGTLSLEVNGVDQG---VAFANIP-RDVHPAVCFYGITKSVRLVELK 474
            G ++  S  S  ++ +    + +G  +WE  +  ++ GDE TCVG    PV++  Y++S  MWMVRCY+G  Y NG   +     IHP + VR   N  AGT+ + ++   Q      F  +  + ++PAVC Y   K++R    K
Sbjct:  384 GDRVWCSTGSSDNYGMATTGVRKGVATWEFEIVSDNHGDEQTCVGFVRRPVSDHRYQNSDDMWMVRCYNGGVYHNG--MSSSVSNIHPGNVVRFKANMTAGTVHMWIDDEPQNGGDPVFTGLTGQTIYPAVCGYSRDKTIRFKSFK 527
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62207.13790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FVC4_ECTSI4.900e-8982.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD94_9PHAE2.300e-8882.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1C7A9_9STRA2.330e-2036.36Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S0JWR0_CAFRO3.980e-1832.24Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8CKN7_CAFRO1.640e-1732.19Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62207contigH-elongata_contig62207:2099..2726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score293.9
Seed ortholog evalue4.7e-77
Seed eggNOG ortholog2880.D7FVC4
Preferred nameHERC1
KEGG koko:K10594,ko:K12864
KEGG Pathwayko03040,ko04120,map03040,map04120
KEGG ModuleM00353
GOsGO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005829,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0006808,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0012505,GO:0016020,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045721,GO:0045912,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051020,GO:0051603,GO:0062012,GO:0062014,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0098772,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
EggNOG OGsCOG5184@1,KOG1426@2759,KOG1477@1,KOG1477@2759
EC2.3.2.26
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size492
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931003.5536175-CDS-H-elongata_contig62207:2098..23591622931003.5536175-CDS-H-elongata_contig62207:2098..2359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62207 2099..2359 -
1691679658.3487043-CDS-H-elongata_contig62207:2098..23591691679658.3487043-CDS-H-elongata_contig62207:2098..2359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62207 2099..2359 -
1622931003.5724294-CDS-H-elongata_contig62207:2495..27261622931003.5724294-CDS-H-elongata_contig62207:2495..2726Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62207 2496..2726 -
1691679658.359816-CDS-H-elongata_contig62207:2495..27261691679658.359816-CDS-H-elongata_contig62207:2495..2726Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62207 2496..2726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62207.13790.1prot_H-elongata_contig62207.13790.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62207 2099..2726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62207.13790.1

>prot_H-elongata_contig62207.13790.1 ID=prot_H-elongata_contig62207.13790.1|Name=mRNA_H-elongata_contig62207.13790.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
AGFDSYLSSKWVVISEGGQLVSSADSGHSHSLVHQCLHRGTWSWELALER
ESSGDETTCVGVAVNPVTNSCYEDSHQMWMVRCYSGETYSNGGRRNHVAC
KIHPQDAVRMTLNCEAGTLSLEVNGVDQGVAFANIPRDVHPAVCFYGITK
SVRLVELKRVYGDS
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mRNA from alignment at H-elongata_contig62207:2099..2726-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62207.13790.1 ID=mRNA_H-elongata_contig62207.13790.1|Name=mRNA_H-elongata_contig62207.13790.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=628bp|location=Sequence derived from alignment at H-elongata_contig62207:2099..2726- (Himanthalia elongata Himel1 dioecious)
GCCGGTTTTGACTCTTACTTGTCTTCCAAGTGGGTGGTGATCAGCGAGGG
TGGCCAACTTGTTTCTAGCGCGGACAGCGGTCACAGCCATAGTCTCGTTC
ACCAATGCCTTCACCGCGGTACATGGTCATGGGAACTAGCGTTGGAGCGA
GAAAGCAGCGGCGACGAAACCACCTGTGTTGGCGTGGCGGTCAACCCGGT
CACCAATTCCTGCTACGAAGATTCACACCAGGTACAAATTATCGCACTAT
AGAGCCCGGTCAGTCCCTTTTCCTCGATCCACTTCTTGATGTTCCTCCCA
TACACATGCAGTCACAAGTTACTTCTATTTATGCCTCGTAACCTTCACCT
ATGAATCTGGTGGTCAGATGTGGATGGTCCGTTGCTACAGTGGCGAAACC
TACAGCAATGGAGGACGCCGGAACCACGTAGCCTGTAAAATCCACCCCCA
AGATGCGGTGCGGATGACGCTCAACTGTGAAGCTGGAACCCTTTCTTTGG
AAGTGAATGGAGTGGACCAGGGTGTAGCTTTCGCGAACATTCCTCGGGAC
GTGCATCCTGCTGTGTGCTTTTACGGAATCACCAAATCCGTGCGTCTGGT
GGAGCTGAAGCGCGTGTACGGTGATTCT
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Coding sequence (CDS) from alignment at H-elongata_contig62207:2099..2726-

>mRNA_H-elongata_contig62207.13790.1 ID=mRNA_H-elongata_contig62207.13790.1|Name=mRNA_H-elongata_contig62207.13790.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig62207:2099..2726- (Himanthalia elongata Himel1 dioecious)
GCCGGTTTTGACTCTTACTTGTCTTCCAAGTGGGTGGTGATCAGCGAGGG
TGGCCAACTTGTTTCTAGCGCGGACAGCGGTCACAGCCATAGTCTCGTTC
ACCAATGCCTTCACCGCGGTACATGGTCATGGGAACTAGCGTTGGAGCGA
GAAAGCAGCGGCGACGAAACCACCTGTGTTGGCGTGGCGGTCAACCCGGT
CACCAATTCCTGCTACGAAGATTCACACCAGGCCGGTTTTGACTCTTACT
TGTCTTCCAAGTGGGTGGTGATCAGCGAGGGTGGCCAACTTGTTTCTAGC
GCGGACAGCGGTCACAGCCATAGTCTCGTTCACCAATGCCTTCACCGCGG
TACATGGTCATGGGAACTAGCGTTGGAGCGAGAAAGCAGCGGCGACGAAA
CCACCTGTGTTGGCGTGGCGGTCAACCCGGTCACCAATTCCTGCTACGAA
GATTCACACCAGATGTGGATGGTCCGTTGCTACAGTGGCGAAACCTACAG
CAATGGAGGACGCCGGAACCACGTAGCCTGTAAAATCCACCCCCAAGATG
CGGTGCGGATGACGCTCAACTGTGAAGCTGGAACCCTTTCTTTGGAAGTG
AATGGAGTGGACCAGGGTGTAGCTTTCGCGAACATTCCTCGGGACGTGCA
TCCTGCTGTGTGCTTTTACGGAATCACCAAATCCGTGCGTCTGGTGGAGC
TGAAGCGCGTGTACGGTGATTCTATGTGGATGGTCCGTTGCTACAGTGGC
GAAACCTACAGCAATGGAGGACGCCGGAACCACGTAGCCTGTAAAATCCA
CCCCCAAGATGCGGTGCGGATGACGCTCAACTGTGAAGCTGGAACCCTTT
CTTTGGAAGTGAATGGAGTGGACCAGGGTGTAGCTTTCGCGAACATTCCT
CGGGACGTGCATCCTGCTGTGTGCTTTTACGGAATCACCAAATCCGTGCG
TCTGGTGGAGCTGAAGCGCGTGTACGGTGATTCT
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