mRNA_H-elongata_contig6215.13785.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6215.13785.1 vs. uniprot
Match: D8LDB9_ECTSI (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB9_ECTSI) HSP 1 Score: 294 bits (753), Expect = 6.390e-83 Identity = 171/322 (53.11%), Postives = 211/322 (65.53%), Query Frame = 3
Query: 846 AREKVALDSREKAFIRLLETGDNRDWEVVLSTPPLLG----PERVVKYAPTASSQAAWVARTAASVGGGRRRHCKSEIRTMVPVGLKKTLVLDLDETLVSTSRVPCDCDFKIVFKLKS-EKVPNEMDT---FAANADAPNAYVDEG---AGAKTKTRSDQSSSSKARVIKYYVRIRPGLIKFLEKTLALYELVIWTASGKSYADAILDCLDPQGRYFSKRLYREACVRHKGLCIKDLRRLGRPMESVILLDNYVYSFGFTLDNGVPISSWAGNEEAKESGLMMAYSLLKHVAKVPDVRIPLIMAFDLYRRIHGTRPPLPPPT 1778
+++ V + EKAFIR L D PLL P AP A VAR+ GG ++ +VP+G KKTLVLDLDETLVS+SR PCDCD+K+VFK+ S EK N + FAANADAP+A +G AG D + I YYV++RPGL +FLEK A+YELV+WTASG+SYADAI+D LDP G F++R YR++C+RH LC+KDLRRLGRPM +V+LLDNYVYSFG TLDNGVPIS W G +EAK SGL AYSLL+ +++ PDVR+PL+ AFDL R+IHG R PLPP T
Sbjct: 294 SKQNVGVPDLEKAFIRSLAEIDADAKAYNNRVRPLLAHIPRPRLFGAVAP-----APGVARSDDGGFGGSKK--------LVPMGHKKTLVLDLDETLVSSSRTPCDCDYKVVFKIHSREKASNNQENTPFFAANADAPDANNSDGIQHAGGYYGGDDDI-----VQEIVYYVQLRPGLARFLEKVAAIYELVVWTASGRSYADAIIDLLDPAGDIFAERFYRDSCLRHHNLCVKDLRRLGRPMNTVVLLDNYVYSFGLTLDNGVPISPWTGAKEAKNSGLTTAYSLLRGISRFPDVRVPLVTAFDLQRKIHGYRFPLPPTT 597
BLAST of mRNA_H-elongata_contig6215.13785.1 vs. uniprot
Match: A0A6H5JK84_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK84_9PHAE) HSP 1 Score: 293 bits (749), Expect = 5.840e-80 Identity = 150/247 (60.73%), Postives = 183/247 (74.09%), Query Frame = 3
Query: 1068 RTMVPVGLKKTLVLDLDETLVSTSRVPCDCDFKIVFKLKS-EKVPNEMDT---FAANADAPNAYVDEGAGAKTKTRSDQSSSSKAR------VIKYYVRIRPGLIKFLEKTLALYELVIWTASGKSYADAILDCLDPQGRYFSKRLYREACVRHKGLCIKDLRRLGRPMESVILLDNYVYSFGFTLDNGVPISSWAGNEEAKESGLMMAYSLLKHVAKVPDVRIPLIMAFDLYRRIHGTRPPLPPPT 1778
+ +VP+G KKTLVLDLDETLVS+SR PCDCD+K+VFK+ S EK N + FAANADAP+A A A + + R I YYV++RPGL +FLEK A+YELV+WTASGKSYADAI+D LDP G F++R YR++C+RH LC+KDLRRLGRPM +V+LLDNYVYSFG TLDNGVPIS W G +EAK SGL AYSLL+ +++ PDVR+PL+ AFDL R+IHG R PLPP T
Sbjct: 397 KKVVPMGHKKTLVLDLDETLVSSSRTPCDCDYKVVFKIHSREKASNNQENTPFFAANADAPDAN---SAAANSSEGIQHAGGYYGRDDDIVQEIVYYVQLRPGLARFLEKVAAIYELVVWTASGKSYADAIIDLLDPAGDIFAERFYRDSCLRHHNLCVKDLRRLGRPMNTVVLLDNYVYSFGLTLDNGVPISPWTGAKEAKNSGLTTAYSLLRGISRFPDVRVPLVTAFDLQRKIHGYRSPLPPTT 640
BLAST of mRNA_H-elongata_contig6215.13785.1 vs. uniprot
Match: A0A1R2C660_9CILI (FCP1 homology domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C660_9CILI) HSP 1 Score: 125 bits (314), Expect = 1.300e-28 Identity = 81/240 (33.75%), Postives = 123/240 (51.25%), Query Frame = 3
Query: 1026 SVGGGRRRHCKSEIRTMVPV---GLKKTLVLDLDETLV-STSRVPCDCDFKIVFKLKSEKVPNEMDTFAANADAPNAYVDEGAGAKTKTRSDQSSSSKARVIKYYVRIRPGLIKFLEKTLALYELVIWTASGKSYADAILDCLDPQGRYFSKRLYREACVRHKGLCIKDLRRLGRPMESVILLDNYVYSFGFTLDNGVPISSWAGNEEAKESGLMMAYSLLKHVAKVPDVRIPLIMAFDL 1733
S+ + + K+ +R + + K+TLVLDLDETLV S+ ++ + D +V L SE P + YV+ RPGL++FL K L +ELVI+TAS K YA+ +++ DPQ + RLYRE C++ +G +KDL RLGR + +I++DN V +F + LDNG+PI SW ++ + L +LL+ + DVR L F+L
Sbjct: 15 SLSNNSKGNFKNNLRVLPAITRSSHKRTLVLDLDETLVHSSEKLVSNPDATVV--LSSENNPRTL---------------------------------------YVKFRPGLMEFLNKVLKFFELVIYTASSKEYAEQVINAFDPQRKILKYRLYREDCIQIEGHFVKDLSRLGRDLSKIIIVDNSVTAFAYHLDNGIPIVSWF--DDPNDCELHKVGTLLEKLINTHDVRPVLNSIFNL 211
BLAST of mRNA_H-elongata_contig6215.13785.1 vs. uniprot
Match: A0A1R2BBL2_9CILI (FCP1 homology domain-containing protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BBL2_9CILI) HSP 1 Score: 124 bits (312), Expect = 2.460e-28 Identity = 82/218 (37.61%), Postives = 116/218 (53.21%), Query Frame = 3
Query: 1092 KKTLVLDLDETLVSTSRVPCDCDFKIVFKLKSEKVPNEMDTFAANADAPNAYVDEGAGAKTKTRSDQSSSSKARVIKYYVRIRPGLIKFLEKTLALYELVIWTASGKSYADAILDCLDPQGRYFSKRLYREACVRHKGLCIKDLRRLGRPMESVILLDNYVYSFGFTLDNGVPISSWAGNEEAKESGLMMAYSLLKHVAKVPDVRIPLIMAFDLYRRI 1745
K+TLVLDLDETLV +S P + P+++ T +S + R + YV+ RPGL++FL K L +ELVI+TAS K YA+ +++ LDPQ + RLYRE C++ G IKDL RLGR + VI+LDN + SF LDNG+PI SW ++ + L +LL+ + + DVR L F+L + I
Sbjct: 40 KRTLVLDLDETLVHSSLQPIEN-------------PDDIVTL-------------------------TSGNNIRTL--YVKYRPGLMEFLYKVLNFFELVIYTASTKEYAEQVINKLDPQRKILKYRLYREDCLQIGGHFIKDLSRLGRDLSHVIILDNSIASFAHHLDNGIPILSWF--DDPNDGELWKVGNLLEQLVRTQDVRPILNSLFNLPKMI 215
BLAST of mRNA_H-elongata_contig6215.13785.1 vs. uniprot
Match: A0A1R2CCD5_9CILI (FCP1 homology domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CCD5_9CILI) HSP 1 Score: 123 bits (308), Expect = 8.430e-28 Identity = 77/214 (35.98%), Postives = 113/214 (52.80%), Query Frame = 3
Query: 1092 KKTLVLDLDETLVSTSRVPCDCDFKIVFKLKSEKVPNEMDTFAANADAPNAYVDEGAGAKTKTRSDQSSSSKARVIKYYVRIRPGLIKFLEKTLALYELVIWTASGKSYADAILDCLDPQGRYFSKRLYREACVRHKGLCIKDLRRLGRPMESVILLDNYVYSFGFTLDNGVPISSWAGNEEAKESGLMMAYSLLKHVAKVPDVRIPLIMAFDL 1733
K+TLVLDLDETLV +S+ P + P+ V G T+T ++V+ RPGL++FL K L ++ELVI+TAS K YA+ +++ LDPQ + RLYR+ C++ G +KDL RLGR + V++LDN + SF LDNG+ I SW ++ ++ L +LL+ + DVR L F+L
Sbjct: 40 KRTLVLDLDETLVHSSQQPIE--------------------------NPDNIVTLSNGTNTRT--------------FFVKYRPGLMEFLRKVLKVFELVIYTASTKEYAEQVINKLDPQRKILKYRLYRDDCIQIGGHFVKDLSRLGRDLSQVVILDNSITSFAHHLDNGILILSWF--DDPSDNELWKVANLLEQLINTQDVRPILNSIFNL 211
BLAST of mRNA_H-elongata_contig6215.13785.1 vs. uniprot
Match: A0A564YPP4_HYMDI (FCP1 homology domain-containing protein n=1 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A564YPP4_HYMDI) HSP 1 Score: 122 bits (305), Expect = 1.530e-27 Identity = 63/144 (43.75%), Postives = 92/144 (63.89%), Query Frame = 3
Query: 1314 VIKYYVRIRPGLIKFLEKTLALYELVIWTASGKSYADAILDCLDPQGRYFSKRLYREACVRHKGLCIKDLRRLGRPMESVILLDNYVYSFGFTLDNGVPISSWAGNEEAKESGLMMAYSLLKHVAKVPDVRIPLIMAFDLYRRI 1745
+IK YVR+RP L FLEK LYE+V++TAS K YAD +++ LDP+ +Y RL+RE+CV G +KDLR LGR + +++DN +FG+ L NG+PI SW +++ E L+ L+ +AK+ DVR + F L R+
Sbjct: 6 LIKVYVRLRPHLQPFLEKVSQLYEVVLFTASTKVYADQLVNLLDPKKKYIKHRLFRESCVFVNGNYVKDLRVLGRDLTKTVIIDNSPQAFGYQLSNGIPIESWFTDQQDTE--LIKLIPFLERLAKLTDVRPFVDRQFQLQSRV 147
BLAST of mRNA_H-elongata_contig6215.13785.1 vs. uniprot
Match: A0A1R2CP47_9CILI (FCP1 homology domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CP47_9CILI) HSP 1 Score: 122 bits (305), Expect = 2.010e-27 Identity = 78/214 (36.45%), Postives = 113/214 (52.80%), Query Frame = 3
Query: 1092 KKTLVLDLDETLVSTSRVPCDCDFKIVFKLKSEKVPNEMDTFAANADAPNAYVDEGAGAKTKTRSDQSSSSKARVIKYYVRIRPGLIKFLEKTLALYELVIWTASGKSYADAILDCLDPQGRYFSKRLYREACVRHKGLCIKDLRRLGRPMESVILLDNYVYSFGFTLDNGVPISSWAGNEEAKESGLMMAYSLLKHVAKVPDVRIPLIMAFDL 1733
K+TLVLDLDETLV +++ + + N P+ V G T+T YV+ RPGL++FL K L +E+V++TAS K YA+ +++ LDPQ + RLYR+ C++ G +KDL RLGR + VI+LDN + SF LDNG+PI SW ++ +S L +LL+ + DVR L F+L
Sbjct: 40 KRTLVLDLDETLVHSTQ---------------QLIEN-----------PDNIVTLSNGNNTRT--------------LYVKYRPGLMEFLRKVLKFFEVVVYTASAKEYAEQVINKLDPQRKMLKYRLYRDDCMQIGGHFVKDLSRLGRDLSQVIILDNSITSFAHHLDNGIPILSWF--DDPNDSELWKVTNLLEQLINTQDVRPILNSIFNL 211
BLAST of mRNA_H-elongata_contig6215.13785.1 vs. uniprot
Match: A0A5B8MZ60_9CHLO (Dullard-like phosphatase n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MZ60_9CHLO) HSP 1 Score: 127 bits (320), Expect = 7.610e-27 Identity = 80/228 (35.09%), Postives = 116/228 (50.88%), Query Frame = 3
Query: 1092 KKTLVLDLDETLVSTS---RVPCD-------CDFKIVFKLKSEKVPNEMDTFAANADAPNAYVDEGAGAKTKTRSDQSSSSKARVIKYYVRIRPGLIKFLEKTLALYELVIWTASGKSYADAILDCLDPQGRYFSKRLYREACVRHKGLCIKDLRRLGRPMESVILLDNYVYSFGFTLDNGVPISSWAGNEEAKESGLMMAYSLLKHVAKVPDVRIPLIMAFDLYRRI 1745
KKTLVLDLDETLV +S +PCD DF L E+ YV +RPG ++FLEK LYE+VI+TAS K YA+ +L+ LDPQ R+ RL+R++CV +G +KDL +GR ++ I++DN +F F L NG+PI SW +++ +E L+ LK + KV DVR ++ + L+ ++
Sbjct: 354 KKTLVLDLDETLVHSSLENELPCDGMEEQLKYDFTFPVHLGDERYD-----------------------------------------VYVYVRPGALEFLEKMQELYEVVIFTASQKMYAEKLLNILDPQRRFIRHRLFRDSCVLVEGNYLKDLSIIGRDLKDTIIVDNSPQAFAFQLSNGIPIESWFDDQQDRE--LLKLIPFLKKLTKVEDVRPSIVKRYKLHDKV 538
BLAST of mRNA_H-elongata_contig6215.13785.1 vs. uniprot
Match: A0A7S0BL76_9RHOD (Hypothetical protein n=5 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BL76_9RHOD) HSP 1 Score: 122 bits (305), Expect = 4.470e-26 Identity = 74/205 (36.10%), Postives = 106/205 (51.71%), Query Frame = 3
Query: 1092 KKTLVLDLDETLVSTSRVPCDCDFKIVFKLKSEKVPNEMDTFAANADAPNAYVDEGAGAKTKTRSDQSSSSKARVIKYYVRIRPGLIKFLEKTLALYELVIWTASGKSYADAILDCLDPQGRYFSKRLYREACVRHKGLCIKDLRRLGRPMESVILLDNYVYSFGFTLDNGVPISSWAGNEEAKESGLMMAYSLLKHVAKVPDVR 1706
+ TLVLDLDETLV S + +F + F +K E+ +VR RP L +FLE+ +E++++TAS K YAD +L+ LDP+ YF R++RE+C+ H G IKDL LGR + +++DN +FGF +DNG+PIS+W E+ + L+ LLK VA PDVR
Sbjct: 175 RSTLVLDLDETLVHCSTEALE-NFDLTFTVKFRDHEYEI---------------------------------------FVRRRPHLEEFLEEISKTFEVIVFTASHKVYADRLLNILDPKNAYFDHRVFRESCLFHVGNYIKDLSVLGREISRTVIIDNSPQAFGFHVDNGIPISTWTVEED--DDALLRLIPLLKDVANAPDVR 337
BLAST of mRNA_H-elongata_contig6215.13785.1 vs. uniprot
Match: A0A7S2Z3U5_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2Z3U5_9CHLO) HSP 1 Score: 121 bits (304), Expect = 4.510e-26 Identity = 78/222 (35.14%), Postives = 119/222 (53.60%), Query Frame = 3
Query: 1092 KKTLVLDLDETLVSTSRVPCDCDFKIVFKLKSEKVPNEMDTFAANADAPNAYVDEGAGAKTKTRSDQSSSSKARVIKY--YVRIRPGLIKFLEKTLALYELVIWTASGKSYADAILDCLDPQGRYFSKRLYREACVRHKGLCIKDLRRLGRPMESVILLDNYVYSFGFTLDNGVPISSWAGNEEAKESGLMMAYSLLKHVAKVPDVRIPLIMAFDLYRRIHG 1751
KKTLVLDLDETLV +S + NE+ + + + R D + +Y YV +RPG I+FLEK L+E+VI+TAS K YA+ +L+ LDP+ R+ RL+R++CV +G +KDL +GR ++ I++DN +F F L NGVPI SW ++E E ++ + LK ++K DVR ++ F L+ ++
Sbjct: 152 KKTLVLDLDETLVHSS------------------LENELPQDPSQGE--------------QLRYDFTFPVHLGEDRYDVYVYVRPGAIEFLEKMQELFEVVIFTASQKMYAEKLLNILDPERRFIRHRLFRDSCVLVEGNYLKDLSVIGRDLKDTIIVDNSPQAFAFQLSNGVPIESWFDDQEDTELTKLIPF--LKKLSKQEDVRPGIVKKFKLHEKVRN 339 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6215.13785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6215.13785.1 >prot_H-elongata_contig6215.13785.1 ID=prot_H-elongata_contig6215.13785.1|Name=mRNA_H-elongata_contig6215.13785.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=549bp MTASAGASSVNMSTTTPEDVSVNVNRASGNRIESDSKGARDSGADTDSPSback to top mRNA from alignment at H-elongata_contig6215:1657..9906- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6215.13785.1 ID=mRNA_H-elongata_contig6215.13785.1|Name=mRNA_H-elongata_contig6215.13785.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=8250bp|location=Sequence derived from alignment at H-elongata_contig6215:1657..9906- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6215:1657..9906- >mRNA_H-elongata_contig6215.13785.1 ID=mRNA_H-elongata_contig6215.13785.1|Name=mRNA_H-elongata_contig6215.13785.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3294bp|location=Sequence derived from alignment at H-elongata_contig6215:1657..9906- (Himanthalia elongata Himel1 dioecious)back to top |