mRNA_H-elongata_contig62145.13783.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: D7FUN3_ECTSI (Arsenite translocating ATPase like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUN3_ECTSI) HSP 1 Score: 164 bits (414), Expect = 1.340e-45 Identity = 89/129 (68.99%), Postives = 95/129 (73.64%), Query Frame = 1
Query: 1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRLQKLADGGKDGEDGGEGKLDISPVPFFDMEVAGVYPLRY 387
LRDLFKNQDATEFCIVTIPTQLAIAESKRLL+AL TQGVAVRNIV+NQ+ +P S EYV RLHKGQ ACI RLQKLADG G +G LDISPVP+FDMEVAGVYPLRY
Sbjct: 357 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLEALNTQGVAVRNIVVNQIVSPDSG------------------PEYVARLHKGQSACIGRLQKLADGAAGGA--ADGALDISPVPYFDMEVAGVYPLRY 465
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: A0A4D9DG36_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DG36_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 2.400e-18 Identity = 52/131 (39.69%), Postives = 77/131 (58.78%), Query Frame = 1
Query: 1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRLQK--LADGGKDGEDGGEGKLDISPVPFFDMEVAGVYPLRY 387
LR+LF++QDATEFCIVTI TQLA+AESKRLL AL + +AVR++V+N++ + H + R+ +GQ C+QR+++ +AD G L VP+ D+EV GV+ L++
Sbjct: 314 LRELFRDQDATEFCIVTIATQLAVAESKRLLAALRKEKIAVRHLVVNKLVQDEDQSQH------------------MARIGRGQALCLQRVERGLVADHG----------LSTVQVPYLDVEVKGVFGLKF 416
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: A0A0G4FEQ3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FEQ3_VITBC) HSP 1 Score: 87.8 bits (216), Expect = 1.550e-17 Identity = 55/129 (42.64%), Postives = 77/129 (59.69%), Query Frame = 1
Query: 1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRLQKLADGGKDGEDGGEGKLDISPVPFFDMEVAGVYPLRY 387
LR L +N + TEFC+VTIPT++AIAESKRLL +L +G+AV+++++N++ S VG + VA L A +V +L Q +QRL LA E L +S VP+FD+EV G LRY
Sbjct: 304 LRGLLRNSETTEFCVVTIPTEMAIAESKRLLASLKKEGIAVKHLIVNKLMTAGSAEQ-VGEIQET-RRVATL-ASFVEQLQSDQVKSLQRLHTLAQ---------EANLRLSFVPYFDVEVTGPLGLRY 420
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: R7QK77_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK77_CHOCR) HSP 1 Score: 82.8 bits (203), Expect = 8.560e-16 Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 1
Query: 1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRLQKLADGGKDGEDGGEGKLDISPVPFFDMEVAGVYPLR 384
LR+L K+++ T+F IVT+PT LA+AES+RL+ +L G+ V+N+V+NQV A + ++V R+ +GQ C++ L++ GED G G ++ VPFFD EV GV+ LR
Sbjct: 593 LRELVKDEERTQFAIVTVPTGLAMAESERLVRSLRKDGILVKNVVVNQVIADAAAE------------------KFVQRILQGQERCVEELRRA------GEDKGIG---LTKVPFFDAEVRGVHGLR 693
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: A0A1X6PKT4_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PKT4_PORUM) HSP 1 Score: 81.3 bits (199), Expect = 3.020e-15 Identity = 53/128 (41.41%), Postives = 72/128 (56.25%), Query Frame = 1
Query: 1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRLQKLADGGKDGEDGGEGKLDISPVPFFDMEVAGVYPLR 384
L DLF++ +EF +V+IPT+L++AES+RL+DAL ++G+ VRN+V NQ+ P R A YV RL GQ IQR+ +D E G L ++ VP FD EV GVY LR
Sbjct: 359 LSDLFRDPARSEFVVVSIPTELSVAESRRLVDALWSEGIWVRNLVANQI-VPADRE-----------------ASYVKRLTTGQEVQIQRI-------RDSE--ALGSLHLTQVPRFDTEVRGVYGLR 459
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: A0A5J4YQC7_PORPP (ATPase GET3 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQC7_PORPP) HSP 1 Score: 81.3 bits (199), Expect = 3.030e-15 Identity = 53/131 (40.46%), Postives = 72/131 (54.96%), Query Frame = 1
Query: 1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAE---YVTRLHKGQGACIQRLQKLADGGKDGEDGGEGKLDISPVPFFDMEVAGVYPLR 384
LR L + T+FCIV+IPT L++AES+RL AL GVA+RNIVINQ+ +G G+ A E +V R K Q ++RL KL+ D + ++ VPFFDMEV G+Y L+
Sbjct: 742 LRYLVTDHSLTQFCIVSIPTVLSVAESERLFCALKRDGVALRNIVINQIVP-------LGTELTPGADAARAEQEEQHFVDRRVKAQAKYVERLHKLSGASDD--------MFLTQVPFFDMEVRGIYGLQ 857
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: A0A8J6C886_DIALT (Uncharacterized protein n=4 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C886_DIALT) HSP 1 Score: 79.7 bits (195), Expect = 1.040e-14 Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = 1
Query: 1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRL-------QKLADGGKDGEDGGE-GKLDISPVPFFDMEVAGVYPLRY 387
LR L + D EFC+VT+PT++A+AE+ RL+ L Q V+VR++V+NQ+ S Y++RL KGQ + +RL + A G + G G E + +SPV ++D+E+ GVYPLR+
Sbjct: 336 LRALLVDADRAEFCVVTVPTEVAMAETARLVGTLREQRVSVRHLVVNQLVEQTSA------------------PAYLSRLRKGQDSIARRLLGRASATEAAAGGAQPGAAGSEWAGVCVSPVRYYDVELRGVYPLRF 454
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: A0A482SMT3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMT3_9ARCH) HSP 1 Score: 77.8 bits (190), Expect = 4.860e-14 Identity = 45/132 (34.09%), Postives = 69/132 (52.27%), Query Frame = 1
Query: 1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRLQKLADGGKDGEDGGEGKLDISPVPFFDMEVAGVYPLRYATS 396
L L +N + TEF +VTIPT LA+AE+KRL+ +L V +R + +NQ+ A + M G A Y+ ++ GQ ACI+ L+ + + + + VP+FDMEV VY LR ++
Sbjct: 639 LEALLRNSEETEFLVVTIPTDLAVAETKRLVSSLDKSNVLIRRVTVNQMIATTDK------MGGPDKVKA-----YIDKVRLGQDACIRELENMTSASSE-------RPSLVQVPYFDMEVRTVYGLRVVSN 752
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: A0A7S4UX30_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UX30_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 8.120e-14 Identity = 48/133 (36.09%), Postives = 71/133 (53.38%), Query Frame = 1
Query: 1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRLQKLADGGKDGED----GGEGKLDISPVPFFDMEVAGVYPLRY 387
LR+ ++ D+T F +VTIPT+L +AESKRL+ LG+QGV V +IV+NQ C S + + Y R GQ + L++ +G E+ G G + ++ VPFFD+E+ GV L Y
Sbjct: 316 LRNRLQDSDSTSFVVVTIPTKLGVAESKRLMTELGSQGVDVTDIVVNQ-CVGKSNEGDIDT--------SEALQNYYNRRKSGQQRWLTELKEATNGVSSTEEFQSNGSTGPIVVTEVPFFDVELVGVPALGY 439
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: A0A7S4QV08_9STRA (Hypothetical protein n=7 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QV08_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 9.080e-14 Identity = 48/133 (36.09%), Postives = 71/133 (53.38%), Query Frame = 1
Query: 1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRLQKLADGGKDGED----GGEGKLDISPVPFFDMEVAGVYPLRY 387
LR+ ++ D+T F +VTIPT+L +AESKRL+ LG+QGV V +IV+NQ C S + + Y R GQ + L++ +G E+ G G + ++ VPFFD+E+ GV L Y
Sbjct: 316 LRNRLQDSDSTSFVVVTIPTKLGVAESKRLMTELGSQGVDVTDIVVNQ-CVGKSNEGDIDT--------SEALQNYYNRRKSGQQRWLTELKEATNGVSSTEEFQSNGSTGPIVVTEVPFFDVELVGVPALGY 439 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig62145.13783.1 >prot_H-elongata_contig62145.13783.1 ID=prot_H-elongata_contig62145.13783.1|Name=mRNA_H-elongata_contig62145.13783.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCback to top mRNA from alignment at H-elongata_contig62145:2818..3455- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig62145.13783.1 ID=mRNA_H-elongata_contig62145.13783.1|Name=mRNA_H-elongata_contig62145.13783.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=638bp|location=Sequence derived from alignment at H-elongata_contig62145:2818..3455- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig62145:2818..3455- >mRNA_H-elongata_contig62145.13783.1 ID=mRNA_H-elongata_contig62145.13783.1|Name=mRNA_H-elongata_contig62145.13783.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig62145:2818..3455- (Himanthalia elongata Himel1 dioecious)back to top |