mRNA_H-elongata_contig62145.13783.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62145.13783.1
Unique NamemRNA_H-elongata_contig62145.13783.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: D7FUN3_ECTSI (Arsenite translocating ATPase like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUN3_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.340e-45
Identity = 89/129 (68.99%), Postives = 95/129 (73.64%), Query Frame = 1
Query:    1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRLQKLADGGKDGEDGGEGKLDISPVPFFDMEVAGVYPLRY 387
            LRDLFKNQDATEFCIVTIPTQLAIAESKRLL+AL TQGVAVRNIV+NQ+ +P S                    EYV RLHKGQ ACI RLQKLADG   G    +G LDISPVP+FDMEVAGVYPLRY
Sbjct:  357 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLEALNTQGVAVRNIVVNQIVSPDSG------------------PEYVARLHKGQSACIGRLQKLADGAAGGA--ADGALDISPVPYFDMEVAGVYPLRY 465          
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: A0A4D9DG36_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DG36_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.400e-18
Identity = 52/131 (39.69%), Postives = 77/131 (58.78%), Query Frame = 1
Query:    1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRLQK--LADGGKDGEDGGEGKLDISPVPFFDMEVAGVYPLRY 387
            LR+LF++QDATEFCIVTI TQLA+AESKRLL AL  + +AVR++V+N++     +  H                  + R+ +GQ  C+QR+++  +AD G          L    VP+ D+EV GV+ L++
Sbjct:  314 LRELFRDQDATEFCIVTIATQLAVAESKRLLAALRKEKIAVRHLVVNKLVQDEDQSQH------------------MARIGRGQALCLQRVERGLVADHG----------LSTVQVPYLDVEVKGVFGLKF 416          
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: A0A0G4FEQ3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FEQ3_VITBC)

HSP 1 Score: 87.8 bits (216), Expect = 1.550e-17
Identity = 55/129 (42.64%), Postives = 77/129 (59.69%), Query Frame = 1
Query:    1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRLQKLADGGKDGEDGGEGKLDISPVPFFDMEVAGVYPLRY 387
            LR L +N + TEFC+VTIPT++AIAESKRLL +L  +G+AV+++++N++    S    VG +      VA L A +V +L   Q   +QRL  LA          E  L +S VP+FD+EV G   LRY
Sbjct:  304 LRGLLRNSETTEFCVVTIPTEMAIAESKRLLASLKKEGIAVKHLIVNKLMTAGSAEQ-VGEIQET-RRVATL-ASFVEQLQSDQVKSLQRLHTLAQ---------EANLRLSFVPYFDVEVTGPLGLRY 420          
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: R7QK77_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QK77_CHOCR)

HSP 1 Score: 82.8 bits (203), Expect = 8.560e-16
Identity = 49/128 (38.28%), Postives = 75/128 (58.59%), Query Frame = 1
Query:    1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRLQKLADGGKDGEDGGEGKLDISPVPFFDMEVAGVYPLR 384
            LR+L K+++ T+F IVT+PT LA+AES+RL+ +L   G+ V+N+V+NQV A  +                    ++V R+ +GQ  C++ L++       GED G G   ++ VPFFD EV GV+ LR
Sbjct:  593 LRELVKDEERTQFAIVTVPTGLAMAESERLVRSLRKDGILVKNVVVNQVIADAAAE------------------KFVQRILQGQERCVEELRRA------GEDKGIG---LTKVPFFDAEVRGVHGLR 693          
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: A0A1X6PKT4_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PKT4_PORUM)

HSP 1 Score: 81.3 bits (199), Expect = 3.020e-15
Identity = 53/128 (41.41%), Postives = 72/128 (56.25%), Query Frame = 1
Query:    1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRLQKLADGGKDGEDGGEGKLDISPVPFFDMEVAGVYPLR 384
            L DLF++   +EF +V+IPT+L++AES+RL+DAL ++G+ VRN+V NQ+  P  R                  A YV RL  GQ   IQR+       +D E    G L ++ VP FD EV GVY LR
Sbjct:  359 LSDLFRDPARSEFVVVSIPTELSVAESRRLVDALWSEGIWVRNLVANQI-VPADRE-----------------ASYVKRLTTGQEVQIQRI-------RDSE--ALGSLHLTQVPRFDTEVRGVYGLR 459          
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: A0A5J4YQC7_PORPP (ATPase GET3 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQC7_PORPP)

HSP 1 Score: 81.3 bits (199), Expect = 3.030e-15
Identity = 53/131 (40.46%), Postives = 72/131 (54.96%), Query Frame = 1
Query:    1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAE---YVTRLHKGQGACIQRLQKLADGGKDGEDGGEGKLDISPVPFFDMEVAGVYPLR 384
            LR L  +   T+FCIV+IPT L++AES+RL  AL   GVA+RNIVINQ+         +G     G+  A    E   +V R  K Q   ++RL KL+    D        + ++ VPFFDMEV G+Y L+
Sbjct:  742 LRYLVTDHSLTQFCIVSIPTVLSVAESERLFCALKRDGVALRNIVINQIVP-------LGTELTPGADAARAEQEEQHFVDRRVKAQAKYVERLHKLSGASDD--------MFLTQVPFFDMEVRGIYGLQ 857          
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: A0A8J6C886_DIALT (Uncharacterized protein n=4 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C886_DIALT)

HSP 1 Score: 79.7 bits (195), Expect = 1.040e-14
Identity = 49/137 (35.77%), Postives = 75/137 (54.74%), Query Frame = 1
Query:    1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRL-------QKLADGGKDGEDGGE-GKLDISPVPFFDMEVAGVYPLRY 387
            LR L  + D  EFC+VT+PT++A+AE+ RL+  L  Q V+VR++V+NQ+    S                     Y++RL KGQ +  +RL       +  A G + G  G E   + +SPV ++D+E+ GVYPLR+
Sbjct:  336 LRALLVDADRAEFCVVTVPTEVAMAETARLVGTLREQRVSVRHLVVNQLVEQTSA------------------PAYLSRLRKGQDSIARRLLGRASATEAAAGGAQPGAAGSEWAGVCVSPVRYYDVELRGVYPLRF 454          
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: A0A482SMT3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMT3_9ARCH)

HSP 1 Score: 77.8 bits (190), Expect = 4.860e-14
Identity = 45/132 (34.09%), Postives = 69/132 (52.27%), Query Frame = 1
Query:    1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRLQKLADGGKDGEDGGEGKLDISPVPFFDMEVAGVYPLRYATS 396
            L  L +N + TEF +VTIPT LA+AE+KRL+ +L    V +R + +NQ+ A   +      M G     A     Y+ ++  GQ ACI+ L+ +     +       +  +  VP+FDMEV  VY LR  ++
Sbjct:  639 LEALLRNSEETEFLVVTIPTDLAVAETKRLVSSLDKSNVLIRRVTVNQMIATTDK------MGGPDKVKA-----YIDKVRLGQDACIRELENMTSASSE-------RPSLVQVPYFDMEVRTVYGLRVVSN 752          
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: A0A7S4UX30_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UX30_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.120e-14
Identity = 48/133 (36.09%), Postives = 71/133 (53.38%), Query Frame = 1
Query:    1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRLQKLADGGKDGED----GGEGKLDISPVPFFDMEVAGVYPLRY 387
            LR+  ++ D+T F +VTIPT+L +AESKRL+  LG+QGV V +IV+NQ C   S    +          +     Y  R   GQ   +  L++  +G    E+    G  G + ++ VPFFD+E+ GV  L Y
Sbjct:  316 LRNRLQDSDSTSFVVVTIPTKLGVAESKRLMTELGSQGVDVTDIVVNQ-CVGKSNEGDIDT--------SEALQNYYNRRKSGQQRWLTELKEATNGVSSTEEFQSNGSTGPIVVTEVPFFDVELVGVPALGY 439          
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Match: A0A7S4QV08_9STRA (Hypothetical protein n=7 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QV08_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 9.080e-14
Identity = 48/133 (36.09%), Postives = 71/133 (53.38%), Query Frame = 1
Query:    1 LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVCAPFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRLQKLADGGKDGED----GGEGKLDISPVPFFDMEVAGVYPLRY 387
            LR+  ++ D+T F +VTIPT+L +AESKRL+  LG+QGV V +IV+NQ C   S    +          +     Y  R   GQ   +  L++  +G    E+    G  G + ++ VPFFD+E+ GV  L Y
Sbjct:  316 LRNRLQDSDSTSFVVVTIPTKLGVAESKRLMTELGSQGVDVTDIVVNQ-CVGKSNEGDIDT--------SEALQNYYNRRKSGQQRWLTELKEATNGVSSTEEFQSNGSTGPIVVTEVPFFDVELVGVPALGY 439          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62145.13783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUN3_ECTSI1.340e-4568.99Arsenite translocating ATPase like protein n=1 Tax... [more]
A0A4D9DG36_9STRA2.400e-1839.69Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A0G4FEQ3_VITBC1.550e-1742.64Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
R7QK77_CHOCR8.560e-1638.28Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6PKT4_PORUM3.020e-1541.41Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5J4YQC7_PORPP3.030e-1540.46ATPase GET3 n=1 Tax=Porphyridium purpureum TaxID=3... [more]
A0A8J6C886_DIALT1.040e-1435.77Uncharacterized protein n=4 Tax=Diacronema lutheri... [more]
A0A482SMT3_9ARCH4.860e-1434.09Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S4UX30_9STRA8.120e-1436.09Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4QV08_9STRA9.080e-1436.09Hypothetical protein n=7 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62145contigH-elongata_contig62145:2818..3455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue4.6e-38
Seed eggNOG ortholog2880.D7FUN3
KEGG koko:K01551
KEGG TC3.A.19.1,3.A.21.1,3.A.4.1
EggNOG free text desc.ATPase activity
EggNOG OGsCOG0003@1,KOG2825@2759
EC3.6.3.16
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size408
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931002.7431943-CDS-H-elongata_contig62145:2817..30071622931002.7431943-CDS-H-elongata_contig62145:2817..3007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62145 2818..3007 -
1691679658.047338-CDS-H-elongata_contig62145:2817..30071691679658.047338-CDS-H-elongata_contig62145:2817..3007Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62145 2818..3007 -
1622931002.7639306-CDS-H-elongata_contig62145:3237..34551622931002.7639306-CDS-H-elongata_contig62145:3237..3455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62145 3238..3455 -
1691679658.0607815-CDS-H-elongata_contig62145:3237..34551691679658.0607815-CDS-H-elongata_contig62145:3237..3455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62145 3238..3455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62145.13783.1prot_H-elongata_contig62145.13783.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62145 2818..3455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62145.13783.1

>prot_H-elongata_contig62145.13783.1 ID=prot_H-elongata_contig62145.13783.1|Name=mRNA_H-elongata_contig62145.13783.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
LRDLFKNQDATEFCIVTIPTQLAIAESKRLLDALGTQGVAVRNIVINQVC
APFSRRHHVGVMCGCGSTVAVLYAEYVTRLHKGQGACIQRLQKLADGGKD
GEDGGEGKLDISPVPFFDMEVAGVYPLRYATSDPL*
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mRNA from alignment at H-elongata_contig62145:2818..3455-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62145.13783.1 ID=mRNA_H-elongata_contig62145.13783.1|Name=mRNA_H-elongata_contig62145.13783.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=638bp|location=Sequence derived from alignment at H-elongata_contig62145:2818..3455- (Himanthalia elongata Himel1 dioecious)
CTGAGGGACCTGTTCAAAAATCAAGACGCGACGGAGTTCTGCATCGTCAC CATACCGACCCAACTGGCCATCGCGGAGTCGAAGCGACTGCTCGACGCGT TGGGCACGCAGGGCGTGGCTGTTCGCAACATTGTCATCAACCAGGTGTGT GCGCCATTTTCACGACGACATCATGTGGGTGTTATGTGTGGTTGCGGATC CACCGTCGCTGTGCTATAGTAACCGCTAGTGTACGATAGTGTACCATAGT AACCGCTAGTGTACGATAGTGTACCATAGTAACCGCTAGTGTACGATAAT GTACCATAGTAACCGCCGGTAAAAAGGTGAAAAAGTAGTCGAGCTATTTA TCGCCTGCCGTTACACACTGCTTTTGTCGTTATGCCTTCTTTTCATTGGA CCTTAATAAAAAATCGGATGTCGAACAGGTGATTAGCCCTGAGGCAAGCG CGGAATACGTCACACGCCTTCACAAAGGGCAGGGCGCGTGCATCCAGCGC CTCCAGAAGCTCGCAGACGGGGGAAAAGATGGCGAAGATGGTGGGGAGGG GAAGCTTGATATCAGCCCCGTGCCATTTTTCGATATGGAGGTGGCGGGGG TATATCCTCTCAGGTATGCGACCAGTGACCCGTTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig62145:2818..3455-

>mRNA_H-elongata_contig62145.13783.1 ID=mRNA_H-elongata_contig62145.13783.1|Name=mRNA_H-elongata_contig62145.13783.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig62145:2818..3455- (Himanthalia elongata Himel1 dioecious)
CTGAGGGACCTGTTCAAAAATCAAGACGCGACGGAGTTCTGCATCGTCAC
CATACCGACCCAACTGGCCATCGCGGAGTCGAAGCGACTGCTCGACGCGT
TGGGCACGCAGGGCGTGGCTGTTCGCAACATTGTCATCAACCAGGTGTGT
GCGCCATTTTCACGACGACATCATGTGGGTGTTATGTGTGGTTGCGGATC
CACCGTCGCTGTGCTATACTGAGGGACCTGTTCAAAAATCAAGACGCGAC
GGAGTTCTGCATCGTCACCATACCGACCCAACTGGCCATCGCGGAGTCGA
AGCGACTGCTCGACGCGTTGGGCACGCAGGGCGTGGCTGTTCGCAACATT
GTCATCAACCAGGTGTGTGCGCCATTTTCACGACGACATCATGTGGGTGT
TATGTGTGGTTGCGGATCCACCGTCGCTGTGCTATACGCGGAATACGTCA
CACGCCTTCACAAAGGGCAGGGCGCGTGCATCCAGCGCCTCCAGAAGCTC
GCAGACGGGGGAAAAGATGGCGAAGATGGTGGGGAGGGGAAGCTTGATAT
CAGCCCCGTGCCATTTTTCGATATGGAGGTGGCGGGGGTATATCCTCTCA
GGTATGCGACCAGTGACCCGTTGTGACGCGGAATACGTCACACGCCTTCA
CAAAGGGCAGGGCGCGTGCATCCAGCGCCTCCAGAAGCTCGCAGACGGGG
GAAAAGATGGCGAAGATGGTGGGGAGGGGAAGCTTGATATCAGCCCCGTG
CCATTTTTCGATATGGAGGTGGCGGGGGTATATCCTCTCAGGTATGCGAC
CAGTGACCCGTTGTGA
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