mRNA_H-elongata_contig62142.13782.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62142.13782.1
Unique NamemRNA_H-elongata_contig62142.13782.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62142.13782.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 65.5 bits (158), Expect = 2.480e-9
Identity = 50/163 (30.67%), Postives = 77/163 (47.24%), Query Frame = 1 
Query:    1 AWRNLETHYRAKGTREILRVSHEINEKIMEPGGDPFKFMIEIDRLAADLNRLGDKSVTELRKCVIIISGLPTDYEMECRMLENNPVGLNRTEIERVVGNQYNRLLRQRQNSKAMPASKGHI------TVNRGKGGDR---RHHPKFNRKCFNCGKGGHYARDC 462
            AW  L   Y        + ++  ++E  ME G    K + + D L   L  LG+  + E R+ VI++S LPT+YE+ C ++EN        E++  +  +Y RL ++    +A+ A+          T   GKG      R +  F  KCFNCG+ GH  RDC
Sbjct:   83 AWNTLRDFYNRTTMHNRVTMTRRLHEFKMEGGVTMAKHLDDFDELIVGLQTLGEP-LDEARQLVILLSSLPTEYELICSIVENAK-DFTLIEVKEKLLKEYERLDKKEGAERALKATANGSKFRCAKTFRGGKGSKAFGSRKNGGFKGKCFNCGQVGHMKRDC 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62142.13782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
H3H572_PHYRM2.480e-930.67Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62142contigH-elongata_contig62142:143..637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue9.3e-09
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size495
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931002.6946993-CDS-H-elongata_contig62142:142..6371622931002.6946993-CDS-H-elongata_contig62142:142..637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62142 143..637 -
1691679658.0287337-CDS-H-elongata_contig62142:142..6371691679658.0287337-CDS-H-elongata_contig62142:142..637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62142 143..637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62142.13782.1prot_H-elongata_contig62142.13782.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62142 143..637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62142.13782.1

>prot_H-elongata_contig62142.13782.1 ID=prot_H-elongata_contig62142.13782.1|Name=mRNA_H-elongata_contig62142.13782.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp
AWRNLETHYRAKGTREILRVSHEINEKIMEPGGDPFKFMIEIDRLAADLN
RLGDKSVTELRKCVIIISGLPTDYEMECRMLENNPVGLNRTEIERVVGNQ
YNRLLRQRQNSKAMPASKGHITVNRGKGGDRRHHPKFNRKCFNCGKGGHY
ARDCRASEESGATDN
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mRNA from alignment at H-elongata_contig62142:143..637-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62142.13782.1 ID=mRNA_H-elongata_contig62142.13782.1|Name=mRNA_H-elongata_contig62142.13782.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=495bp|location=Sequence derived from alignment at H-elongata_contig62142:143..637- (Himanthalia elongata Himel1 dioecious)
GCGTGGCGAAATCTTGAAACACACTACAGAGCGAAGGGAACTAGAGAGAT
ACTTCGCGTGTCCCATGAAATCAACGAGAAAATAATGGAACCAGGTGGGG
ACCCATTCAAATTTATGATTGAAATTGACAGGCTAGCAGCTGATCTCAAC
CGATTAGGCGACAAATCCGTGACTGAATTAAGAAAATGCGTAATTATCAT
ATCTGGTCTTCCTACTGACTACGAGATGGAGTGCCGCATGTTGGAAAATA
ACCCTGTTGGTCTTAACAGGACTGAAATTGAGCGTGTCGTAGGGAATCAG
TACAACAGACTTCTCAGGCAACGACAGAATTCAAAGGCTATGCCGGCATC
AAAGGGCCACATTACGGTGAATCGCGGAAAAGGGGGGGACAGAAGACACC
ACCCCAAATTCAACCGAAAGTGTTTCAATTGCGGAAAGGGAGGACACTAC
GCTCGGGACTGCAGGGCGAGTGAGGAATCAGGGGCCACAGACAAC
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Coding sequence (CDS) from alignment at H-elongata_contig62142:143..637-

>mRNA_H-elongata_contig62142.13782.1 ID=mRNA_H-elongata_contig62142.13782.1|Name=mRNA_H-elongata_contig62142.13782.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at H-elongata_contig62142:143..637- (Himanthalia elongata Himel1 dioecious)
GCGTGGCGAAATCTTGAAACACACTACAGAGCGAAGGGAACTAGAGAGAT
ACTTCGCGTGTCCCATGAAATCAACGAGAAAATAATGGAACCAGGTGGGG
ACCCATTCAAATTTATGATTGAAATTGACAGGCTAGCAGCTGATCTCAAC
CGATTAGGCGACAAATCCGTGACTGAATTAAGAAAATGCGTAATTATCAT
ATCTGGTCTTCCTACTGACTACGAGATGGAGTGCCGCATGTTGGAAAATA
ACCCTGTTGGTCTTAACAGGACTGAAATTGAGCGTGTCGTAGGGAATCAG
TACAACAGACTTCTCAGGCAACGACAGAATTCAAAGGCTATGCCGGCATC
AAAGGGCCACATTACGGTGAATCGCGGAAAAGGGGGGGACAGAAGACACC
ACCCCAAATTCAACCGAAAGTGTTTCAATTGCGGAAAGGGAGGACACTAC
GCTCGGGACTGCAGGGCGAGTGAGGAATCAGGGGCCACAGACAACGCGTG
GCGAAATCTTGAAACACACTACAGAGCGAAGGGAACTAGAGAGATACTTC
GCGTGTCCCATGAAATCAACGAGAAAATAATGGAACCAGGTGGGGACCCA
TTCAAATTTATGATTGAAATTGACAGGCTAGCAGCTGATCTCAACCGATT
AGGCGACAAATCCGTGACTGAATTAAGAAAATGCGTAATTATCATATCTG
GTCTTCCTACTGACTACGAGATGGAGTGCCGCATGTTGGAAAATAACCCT
GTTGGTCTTAACAGGACTGAAATTGAGCGTGTCGTAGGGAATCAGTACAA
CAGACTTCTCAGGCAACGACAGAATTCAAAGGCTATGCCGGCATCAAAGG
GCCACATTACGGTGAATCGCGGAAAAGGGGGGGACAGAAGACACCACCCC
AAATTCAACCGAAAGTGTTTCAATTGCGGAAAGGGAGGACACTACGCTCG
GGACTGCAGGGCGAGTGAGGAATCAGGGGCCACAGACAAC
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