mRNA_H-elongata_contig117676.1378.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117676.1378.1
Unique NamemRNA_H-elongata_contig117676.1378.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117676.1378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117676contigH-elongata_contig117676:892..1985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size177
Cds size174
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117676.1378.1prot_H-elongata_contig117676.1378.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117676 894..1985 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929686.4778595-CDS-H-elongata_contig117676:893..9731622929686.4778595-CDS-H-elongata_contig117676:893..973Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117676 894..973 -
1691679119.0488493-CDS-H-elongata_contig117676:893..9731691679119.0488493-CDS-H-elongata_contig117676:893..973Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117676 894..973 -
1622929686.493925-CDS-H-elongata_contig117676:1233..12691622929686.493925-CDS-H-elongata_contig117676:1233..1269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117676 1234..1269 -
1691679119.0599983-CDS-H-elongata_contig117676:1233..12691691679119.0599983-CDS-H-elongata_contig117676:1233..1269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117676 1234..1269 -
1622929686.5123286-CDS-H-elongata_contig117676:1927..19851622929686.5123286-CDS-H-elongata_contig117676:1927..1985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117676 1928..1985 -
1691679119.0706146-CDS-H-elongata_contig117676:1927..19851691679119.0706146-CDS-H-elongata_contig117676:1927..1985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117676 1928..1985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117676.1378.1

>prot_H-elongata_contig117676.1378.1 ID=prot_H-elongata_contig117676.1378.1|Name=mRNA_H-elongata_contig117676.1378.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
DIEETCSETGEAPCYIDDDDSPSPISSTTPTGSTCSNGLDGVESSNGKYC
CTDDCSAC
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mRNA from alignment at H-elongata_contig117676:892..1985-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117676.1378.1 ID=mRNA_H-elongata_contig117676.1378.1|Name=mRNA_H-elongata_contig117676.1378.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1094bp|location=Sequence derived from alignment at H-elongata_contig117676:892..1985- (Himanthalia elongata Himel1 dioecious)
GATATCGAAGAGACGTGCAGCGAAACGGGAGAGGCACCCTGCTATATCGA
CGACGACGGTGCGTCACAAACCAATATTATCGCGAGAGTCGACGCTCTGT
TTCTTATTATATTATCATCCAATCATTATCCAGCACGTCTCCGATGCTGT
CTGTGGCTGTATCGCACTTGCTCACTGTACCAATCGTGGGTGTGAGAAAA
ATACTAATTGGACATGGGATTACATGAGCAGGCTGCACTCGTTACTCAAG
CTACTTTGAGGACTGCTGGCTCAGTGTCGACAAACTCTCGGTGTTAAACG
CCTTCGGTAGGCAATTGTATGGGCTGATGGCAGTTGGCGGAAGAAACAGA
CGCCGTCGTGGAAAACGAGAGGATTGGAAGAATCCCAGTACGGATCAGAT
TCAGCCTGTGTTGAGAGAATGAGCAGGCTGACGTGGAACGGGGCTGCTGA
ACCCGTCTCGCGAGACCAAATTCTCAGGCGCGAATGGGGACAGTGTAAAA
TTCAGTTTTCCTGCTCCGCTGATCACAAGCAGGAGGCAACCAAATCCGGT
CGAACTCACTCTGCTATATATGTGATTACCACACATCATATCAGTCTCTC
TCATCTTGAAAGTGGACGGATTTGCATCATTGTAAAATATCGTCTTATTT
GCTCCCTGATTTGCCTCCTCCCGTCAACAACGAACTATTGGACATTGGTG
ACCGCATCGAGGGCAGATTCTCCCAGTCCGATATCATCGACGACCCCCAC
TGGTGAGTTGAATTTCCGATCAATCAATAGTTCAGCGTTCGACATAATAA
ATCCTTAAATAACCCGTCGATCATGTTTGTGTCGACCCCGTGCGATATAA
CGCCTTTTCTTGCAACACCCGGCTAAAAGCTCTAAGGAAACGAACAGCAA
ATAACAGGACGTTTGGGATCAGAAGAGGACGATAAAATATAGCGCCAAGA
TATATTTTTTTCCTCAGTCACTTGTATGATGGTGTTTTCTATTTCACTCA
AAAAAATGACAGGATCGACTTGCAGCAACGGCCTTGATGGCGTCGAGTCT
AGCAACGGTAAGTACTGCTGCACGGACGACTGTTCAGCCTGTGG
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Coding sequence (CDS) from alignment at H-elongata_contig117676:892..1985-

>mRNA_H-elongata_contig117676.1378.1 ID=mRNA_H-elongata_contig117676.1378.1|Name=mRNA_H-elongata_contig117676.1378.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig117676:892..1985- (Himanthalia elongata Himel1 dioecious)
GATATCGAAGAGACGTGCAGCGAAACGGGAGAGGCACCCTGCTATATCGA
CGACGACGGATATCGAAGAGACGTGCAGCGAAACGGGAGAGGCACCCTGC
TATATCGACGACGACGATTCTCCCAGTCCGATATCATCGACGACCCCCAC
TGATTCTCCCAGTCCGATATCATCGACGACCCCCACTGGATCGACTTGCA
GCAACGGCCTTGATGGCGTCGAGTCTAGCAACGGTAAGTACTGCTGCACG
GACGACTGTTCAGCCTGTGATCGACTTGCAGCAACGGCCTTGATGGCGTC
GAGTCTAGCAACGGTAAGTACTGCTGCACGGACGACTGTTCAGCCTGT
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