mRNA_H-elongata_contig62118.13775.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62118.13775.1
Unique NamemRNA_H-elongata_contig62118.13775.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62118.13775.1 vs. uniprot
Match: D7G3D7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D7_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 3.080e-54
Identity = 94/109 (86.24%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSHPAGRKKPETGGKGKGRQRTPGCASPDRTPGRTNSPRRSGCSLSTRSEVALKERRLL 327
            MHAFCGRGIGDEG+GQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSHPAGRKKPETGGKGKGRQRT            TNS RRSGCSLS+RSEVALKERRLL
Sbjct:    1 MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSHPAGRKKPETGGKGKGRQRT----------AETNSQRRSGCSLSSRSEVALKERRLL 99
[Close]
BLAST of mRNA_H-elongata_contig62118.13775.1 vs. uniprot
Match: A0A6H5JEK6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK6_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 6.180e-16
Identity = 51/92 (55.43%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSH---PAGRKKPETGGKGKGRQRTPGCASPDRTPGRTNSPR 267
            MHAFC RGIG+EG GQQR C DCQ+RT  G IGT ++PMEVDS  D+E+  S    PAG K+ ET  KGK          P RT GRT  PR
Sbjct:   43 MHAFCDRGIGEEGFGQQRECRDCQRRTTTGKIGTGTNPMEVDSSSDNEDMKSRTRQPAGGKESETARKGK---------RPQRTAGRTQVPR 125
[Close]
BLAST of mRNA_H-elongata_contig62118.13775.1 vs. uniprot
Match: A0A6H5JT55_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT55_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.500e-15
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSHP---AGRKKPETGGKGKGRQRTPG 222
            MH FCGRGIG+EG GQQR CTDCQ+RT  G IGT +SPMEV+S  D+E++SS     AG K+ E   KGK  QRT G
Sbjct:   43 MHGFCGRGIGEEGFGQQRECTDCQRRTTTGKIGTGTSPMEVNSSSDNEDNSSRTRQRAGGKESEFARKGKRPQRTAG 119
[Close]
BLAST of mRNA_H-elongata_contig62118.13775.1 vs. uniprot
Match: A0A6H5JYC6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.950e-12
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSS--HPAGRKKPETGGKGK 201
            MHAFCGRGIG+EG+GQQR C+DCQK       G+SSSPMEVD+ ++ ++S S   P   ++P  GGKGK
Sbjct:   43 MHAFCGRGIGEEGYGQQRECSDCQKSKGGAQAGSSSSPMEVDAEENEQDSRSTTQPFRVEEPSVGGKGK 111
[Close]
BLAST of mRNA_H-elongata_contig62118.13775.1 vs. uniprot
Match: A0A6H5KEU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU0_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.510e-11
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENS 150
            MHAFCGRGIG+EG+GQQR C+DCQK       G+SSSPMEVD+ ++ ++S
Sbjct:   43 MHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEVDAEENEQDS 92
[Close]
BLAST of mRNA_H-elongata_contig62118.13775.1 vs. uniprot
Match: A0A6H5L7T1_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.740e-11
Identity = 34/48 (70.83%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSE 144
            MH FCGRGIG+EG GQQR  T CQKRT  G IGT +SPMEVDS  D+E
Sbjct:    1 MHGFCGRGIGEEGFGQQRERTYCQKRTTSGKIGTGTSPMEVDSSGDNE 48
[Close]
BLAST of mRNA_H-elongata_contig62118.13775.1 vs. uniprot
Match: A0A6H5KEL4_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEL4_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.880e-10
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENS 150
            MHAFCGRGIG EG+GQQR CT+CQK       G+ SSPMEVD  D+ E S
Sbjct:    1 MHAFCGRGIGKEGYGQQRKCTECQKTAPGSRTGSPSSPMEVDDDDEQEES 50
[Close]
BLAST of mRNA_H-elongata_contig62118.13775.1 vs. uniprot
Match: A0A6H5L8A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8A7_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.320e-10
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENS 150
            MHAFCGRGIG+EG+GQQR C+DCQK       G+SSSPMEVD+ ++ ++S
Sbjct:   43 MHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEVDAEENEQDS 92
[Close]
BLAST of mRNA_H-elongata_contig62118.13775.1 vs. uniprot
Match: A0A6H5L464_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L464_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.080e-9
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEV 123
            MHAFCGRGIG+EG+GQQR C+DCQK       G+SSSPMEV
Sbjct:    1 MHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEV 41
[Close]
BLAST of mRNA_H-elongata_contig62118.13775.1 vs. uniprot
Match: A0A6H5K408_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K408_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.750e-9
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEV 123
            MHAFCGRGIG+EG+GQQR C+DCQK       G+SSSPMEV
Sbjct:   43 MHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEV 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62118.13775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G3D7_ECTSI3.080e-5486.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEK6_9PHAE6.180e-1655.43DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JT55_9PHAE1.500e-1561.04HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JYC6_9PHAE4.950e-1256.52DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KEU0_9PHAE1.510e-1162.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7T1_9PHAE3.740e-1170.83HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KEL4_9PHAE2.880e-1064.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L8A7_9PHAE4.320e-1062.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L464_9PHAE1.080e-970.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K408_9PHAE1.750e-970.73Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62118contigH-elongata_contig62118:295..1482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size330
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62118.13775.1prot_H-elongata_contig62118.13775.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62118 295..1482 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931002.1715972-CDS-H-elongata_contig62118:294..4081622931002.1715972-CDS-H-elongata_contig62118:294..408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62118 295..408 -
1691679657.8355207-CDS-H-elongata_contig62118:294..4081691679657.8355207-CDS-H-elongata_contig62118:294..408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62118 295..408 -
1622931002.19979-CDS-H-elongata_contig62118:514..5811622931002.19979-CDS-H-elongata_contig62118:514..581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62118 515..581 -
1691679657.8444843-CDS-H-elongata_contig62118:514..5811691679657.8444843-CDS-H-elongata_contig62118:514..581Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62118 515..581 -
1622931002.21761-CDS-H-elongata_contig62118:1333..14821622931002.21761-CDS-H-elongata_contig62118:1333..1482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62118 1334..1482 -
1691679657.8554962-CDS-H-elongata_contig62118:1333..14821691679657.8554962-CDS-H-elongata_contig62118:1333..1482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62118 1334..1482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62118.13775.1

>prot_H-elongata_contig62118.13775.1 ID=prot_H-elongata_contig62118.13775.1|Name=mRNA_H-elongata_contig62118.13775.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MHAFCGRGIGDEGHGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENS
SSHPAGRKKPETGGKGKGRQRTPGCASPDRTPGRTNSPRRSGCSLSTRSE
VALKERRLL*
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mRNA from alignment at H-elongata_contig62118:295..1482-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62118.13775.1 ID=mRNA_H-elongata_contig62118.13775.1|Name=mRNA_H-elongata_contig62118.13775.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1188bp|location=Sequence derived from alignment at H-elongata_contig62118:295..1482- (Himanthalia elongata Himel1 dioecious)
ATGCATGCCTTCTGCGGGCGAGGCATCGGGGATGAAGGCCACGGGCAGCA
GCGAATGTGCACGGATTGTCAGAAGAGAACGGATGAGGGCGGGATCGGCA
CCAGCAGCAGTCCCATGGAGGTGGACAGTGGAGACGACAGCGAGAACAGG
TGATGAGCGTGAATCGCGCAACAGTCAGCAGTAGCAGTCAGCAGCCAGCA
GCCCTCGACCGAACGAAAACCGTGCTGCTGCTGGGCATGAAAGCGACTCA
CGCGCCATGAACCACCACACGAAATATCACCGTTCCCACTCGCACATGAT
TTCTGCGTTCCTTTCTGTCAAACATGAGGAGTTCGGCACAACCTTGTGTG
GGTGTTTTTTTTTCTCTCTGTGTGTGTGTGTGTATGCGTGTGTGTGTGTG
TGTCTGTCTGGTGTGTGTGTGATACTGCTGTAAAGCAAAAATAAATTTTG
GCAAACACAAAAACAGTTCGCTGTCGCAGCTGTTGGCATGGGAGCAAATG
ACTCGCTGCGCTGCCGTACTCGTGCTCGCACTTCGGCGGTGATATGCAGA
CTGTCGTGTTCGAGAGGTCTGCTGTATGTCATGCAGGATTTACACTTGAA
AGCTCGCTTGAAAAATAGGCTATGTACACAATTACCTGCTGTGCGATATG
TACATCGTGCTCCCAAAAATCTGGAATGCTTGTGTGCCTCTCTTGCCTCA
TTTCCATACGTACATGTACATGGATAAGCTGCTGCCAGCACAGATATGTG
CTCTTTCCCTGGAAAATCAGCGCAAGTTATATTTGGCGCGACTGCTGCAC
TATTTACCATGTGGATTCTCGCGTTCCTCCGTCAGCACAAGTGCCGACAA
CCTCCCTTGACATCTCGACCTTCACTCGCCACTTTTTTTCCTTACGCCCA
GCTCGTCGCACCCGGCCGGGCGCAAGAAGCCAGAGACTGGAGGGAAGGGA
AAAGGGCGTCAACGTACCGTTGGGACAGACGGCAGAGGTGCCGCCGGAGC
GAGCGGCGGAGTTACCGCGGGGGCGGGCGGCGAAGGTGCCCCGGAGGGGG
GCGCTGGTGCCGCCGCCAAAAAAGCCAGGGTGTGCAAGCCCGGACCGGAC
ACCGGGAAGAACAAACTCTCCACGGCGCAGCGGTTGCAGCTTGTCAACGA
GATCCGAGGTGGCGCTAAAAGAAAGGCGGTTGCTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig62118:295..1482-

>mRNA_H-elongata_contig62118.13775.1 ID=mRNA_H-elongata_contig62118.13775.1|Name=mRNA_H-elongata_contig62118.13775.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig62118:295..1482- (Himanthalia elongata Himel1 dioecious)
ATGCATGCCTTCTGCGGGCGAGGCATCGGGGATGAAGGCCACGGGCAGCA
GCGAATGTGCACGGATTGTCAGAAGAGAACGGATGAGGGCGGGATCGGCA
CCAGCAGCAGTCCCATGGAGGTGGACAGTGGAGACGACAGCGAGAACAGA
TGCATGCCTTCTGCGGGCGAGGCATCGGGGATGAAGGCCACGGGCAGCAG
CGAATGTGCACGGATTGTCAGAAGAGAACGGATGAGGGCGGGATCGGCAC
CAGCAGCAGTCCCATGGAGGTGGACAGTGGAGACGACAGCGAGAACAGCT
CGTCGCACCCGGCCGGGCGCAAGAAGCCAGAGACTGGAGGGAAGGGAAAA
GGGCGTCAACGTACCCTCGTCGCACCCGGCCGGGCGCAAGAAGCCAGAGA
CTGGAGGGAAGGGAAAAGGGCGTCAACGTACCCCAGGGTGTGCAAGCCCG
GACCGGACACCGGGAAGAACAAACTCTCCACGGCGCAGCGGTTGCAGCTT
GTCAACGAGATCCGAGGTGGCGCTAAAAGAAAGGCGGTTGCTGTAACCAG
GGTGTGCAAGCCCGGACCGGACACCGGGAAGAACAAACTCTCCACGGCGC
AGCGGTTGCAGCTTGTCAACGAGATCCGAGGTGGCGCTAAAAGAAAGGCG
GTTGCTGTAA
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