mRNA_H-elongata_contig62091.13773.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62091.13773.1
Unique NamemRNA_H-elongata_contig62091.13773.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: D8LCU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU7_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 2.800e-34
Identity = 61/80 (76.25%), Postives = 68/80 (85.00%), Query Frame = 2
Query:    2 QTGPQFRGVKMIPAGLHLAHFGTGEGEKQGFFFRSGARSVAATQWDPSAEDLIHAEACLPEGALRGLRDSVLRLEMDAGL 241
            +TGPQF+GVKMIP GLH  HFGTGEGEKQG FFRS A SVAATQWD SAEDL+ A+ CLP+GA+R LR+SVLRLEMD  L
Sbjct:   40 KTGPQFKGVKMIPPGLHFTHFGTGEGEKQGIFFRSSAGSVAATQWDTSAEDLVDAQTCLPDGAVRALRESVLRLEMDKSL 119          
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: A0A6H5JER9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER9_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.100e-33
Identity = 61/80 (76.25%), Postives = 67/80 (83.75%), Query Frame = 2
Query:    2 QTGPQFRGVKMIPAGLHLAHFGTGEGEKQGFFFRSGARSVAATQWDPSAEDLIHAEACLPEGALRGLRDSVLRLEMDAGL 241
            +TGPQF+GVKMIP GLH AHFGTGEGEKQG FFRS   SVAATQWD SAEDL+ A+  LP+GALR LR+SVLRLEMD  L
Sbjct:   35 KTGPQFQGVKMIPPGLHFAHFGTGEGEKQGIFFRSSVGSVAATQWDTSAEDLVDAQTRLPDGALRALRESVLRLEMDKSL 114          
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: A0A835YN26_9STRA (A1 cistron-splicing factor (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN26_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 8.800e-22
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    2 QTGPQFRGVKMIPAGLHLAHFGTGEGEKQGFFFRSGARSVAATQWDPSAEDLIHAEACLPEGALRGLRDSVLRLEMDAGL 241
            QTGP F+G+KMIP GLHL ++G  E E QG FF   A SV    WD +AEDL+H +  LP+GAL  L  +VLR E+DA L
Sbjct:   23 QTGPNFKGMKMIPQGLHLLYYGLSESEHQGMFFEVRAGSVQVLCWDAAAEDLVHGDKNLPQGALAELTAAVLRGELDANL 102          
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: A0A0S7H0S7_9TELE (Protein AAR2 homolog (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7H0S7_9TELE)

HSP 1 Score: 56.2 bits (134), Expect = 2.070e-8
Identity = 28/61 (45.90%), Postives = 31/61 (50.82%), Query Frame = 2
Query:    2 QTGPQFRGVKMIPAGLHLAHF--------GTGEGEKQGFFFRSGARSVAATQWDPSAEDLI 160
            Q GP+FRGVKMIP GLH  HF        G   G K G F     R +    WDP  ED+I
Sbjct:   43 QVGPRFRGVKMIPPGLHFLHFCSVNSPSCGGEVGPKSGLFLTLKPREILLAHWDPKEEDVI 103          
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: A0A1Y2D178_9FUNG (AAR2-domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2D178_9FUNG)

HSP 1 Score: 57.4 bits (137), Expect = 8.860e-8
Identity = 30/85 (35.29%), Postives = 49/85 (57.65%), Query Frame = 2
Query:    2 QTGPQFRGVKMIPAGLHLAHFG-----TGE-GEKQGFFFRSGARSVAATQWDPSAEDLIHAEACLPEGALRGLRDSVLRLEMDAG 238
            QTGP+F+G+K+IP G H  H+      TG+ G + GFF    ++ +  TQW+ S EDL+  E+ L +  +  L+ +++  E   G
Sbjct:   26 QTGPRFKGLKLIPPGFHFIHYSSKSTSTGDTGVRTGFFKFFASKEIYVTQWNASEEDLMEQES-LDKAQVERLKYNIMEFEPSLG 109          
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: A0A665TYK0_ECHNA (Protein AAR2 homolog n=5 Tax=Carangaria TaxID=1489904 RepID=A0A665TYK0_ECHNA)

HSP 1 Score: 57.4 bits (137), Expect = 8.890e-8
Identity = 33/83 (39.76%), Postives = 42/83 (50.60%), Query Frame = 2
Query:    2 QTGPQFRGVKMIPAGLHLAHF--------GTGEGEKQGFFFRSGARSVAATQWDPSAEDLIHAEACLPEGALRGLRDSVLRLE 226
            Q GP+FRGVKMIP GLH  HF        G+  G K G F     R +    WDP  EDL  +++   E   R +R S+  L+
Sbjct:   43 QVGPRFRGVKMIPPGLHFLHFSSVNLPSCGSEIGPKTGLFLSLKPREILVANWDPKTEDLDFSDSKNEEEVSR-IRASLQELD 124          
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: A0A4Z2FA14_9TELE (Protein AAR2 homolog n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2FA14_9TELE)

HSP 1 Score: 57.4 bits (137), Expect = 8.950e-8
Identity = 35/80 (43.75%), Postives = 41/80 (51.25%), Query Frame = 2
Query:    2 QTGPQFRGVKMIPAGLHLAHFGT-------GE-GEKQGFFFRSGARSVAATQWDPSAEDLIHAEACLPEGALR---GLRD 208
            Q GP+F+GVKMIP GLH  HF +       GE G K G F     R +    WDP  EDL  + +   E  LR   GLRD
Sbjct:   35 QVGPRFKGVKMIPPGLHFLHFSSVSSPSCGGEAGPKTGLFLSLRPRDLLLATWDPEEEDLDFSASQSEEEVLRVRAGLRD 114          
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: A0A8H4A729_GIGMA (AAR2-domain-containing protein n=2 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4A729_GIGMA)

HSP 1 Score: 57.0 bits (136), Expect = 1.200e-7
Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 2
Query:    2 QTGPQFRGVKMIPAGLHLAHFGTGE-----GEKQGFFFRSGARSVAATQWDPSAEDLIHAEACLPE 184
            QTGP+F+GVK+IP GLH  ++ T +     G + GFF    ++ V    WDP+ ED+   +  +PE
Sbjct:   35 QTGPRFKGVKLIPPGLHFVYYSTSDKSGISGLRNGFFKFYESKEVVIKYWDPNIEDIKRDDETVPE 100          
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: H2M0R9_ORYLA (Protein AAR2 homolog n=6 Tax=Oryzias TaxID=8089 RepID=H2M0R9_ORYLA)

HSP 1 Score: 57.0 bits (136), Expect = 1.220e-7
Identity = 33/83 (39.76%), Postives = 43/83 (51.81%), Query Frame = 2
Query:    2 QTGPQFRGVKMIPAGLHLAHF--------GTGEGEKQGFFFRSGARSVAATQWDPSAEDLIHAEACLPEGALRGLRDSVLRLE 226
            Q GP+FRGVKMIP GLH  H+        G   G K G F     R +    WDP+AEDL  + A   E  L  +R+++  L+
Sbjct:   42 QVGPRFRGVKMIPPGLHFLHYCSVSSINSGGEVGPKTGVFLTLKPREILLANWDPTAEDLDFS-ASKNEEELTRIRETLQELD 123          
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Match: A0A3P8WZ55_CYNSE (Protein AAR2 homolog n=2 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8WZ55_CYNSE)

HSP 1 Score: 56.6 bits (135), Expect = 1.660e-7
Identity = 28/60 (46.67%), Postives = 33/60 (55.00%), Query Frame = 2
Query:    2 QTGPQFRGVKMIPAGLHLAHFGTGE-----GE---KQGFFFRSGARSVAATQWDPSAEDL 157
            Q GP+FRG+KMIP GLH  H+  G      GE   K GFF     R +   +WDP  EDL
Sbjct:   35 QVGPRFRGIKMIPPGLHFLHYSAGNPSQSRGEIFLKTGFFLSLRPREILLAKWDPKEEDL 94          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62091.13773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCU7_ECTSI2.800e-3476.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JER9_9PHAE1.100e-3376.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YN26_9STRA8.800e-2255.00A1 cistron-splicing factor (Fragment) n=1 Tax=Trib... [more]
A0A0S7H0S7_9TELE2.070e-845.90Protein AAR2 homolog (Fragment) n=1 Tax=Poeciliops... [more]
A0A1Y2D178_9FUNG8.860e-835.29AAR2-domain-containing protein n=1 Tax=Rhizoclosma... [more]
A0A665TYK0_ECHNA8.890e-839.76Protein AAR2 homolog n=5 Tax=Carangaria TaxID=1489... [more]
A0A4Z2FA14_9TELE8.950e-843.75Protein AAR2 homolog n=1 Tax=Liparis tanakae TaxID... [more]
A0A8H4A729_GIGMA1.200e-739.39AAR2-domain-containing protein n=2 Tax=Gigaspora m... [more]
H2M0R9_ORYLA1.220e-739.76Protein AAR2 homolog n=6 Tax=Oryzias TaxID=8089 Re... [more]
A0A3P8WZ55_CYNSE1.660e-746.67Protein AAR2 homolog n=2 Tax=Cynoglossus semilaevi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62091contigH-elongata_contig62091:434..1559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931001.7538006-CDS-H-elongata_contig62091:433..5211622931001.7538006-CDS-H-elongata_contig62091:433..521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62091 434..521 +
1691679657.6448581-CDS-H-elongata_contig62091:433..5211691679657.6448581-CDS-H-elongata_contig62091:433..521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62091 434..521 +
1622931001.7746642-CDS-H-elongata_contig62091:1403..15581622931001.7746642-CDS-H-elongata_contig62091:1403..1558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62091 1404..1558 +
1691679657.6580927-CDS-H-elongata_contig62091:1403..15581691679657.6580927-CDS-H-elongata_contig62091:1403..1558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62091 1404..1558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62091.13773.1prot_H-elongata_contig62091.13773.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62091 434..1558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62091.13773.1

>prot_H-elongata_contig62091.13773.1 ID=prot_H-elongata_contig62091.13773.1|Name=mRNA_H-elongata_contig62091.13773.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
SDGAAISGRQDDSGWVALGPLRDRRGREAGFLFPERREVGGGDAVGPLRR
GPHTRGGMSPRGGASRPEGLRVAAGNGRRAR
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mRNA from alignment at H-elongata_contig62091:434..1559+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62091.13773.1 ID=mRNA_H-elongata_contig62091.13773.1|Name=mRNA_H-elongata_contig62091.13773.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1126bp|location=Sequence derived from alignment at H-elongata_contig62091:434..1559+ (Himanthalia elongata Himel1 dioecious)
TCAGACGGGGCCGCAATTTCGGGGCGTCAAGATGATTCCGGCTGGGTTGC ACTTGGCCCACTTCGGGACAGGCGAGGGCGAGAAGCAGGTGGGTGAAGCT CAATACAGTAGGCATTTTTTTCTTCTTTTTTTTCCCCTCAGGTTGTTGGA TTTCCTTTCTCTTGTATTATTGTTTTCCTTTATTTTTTCTCCCTATATAC TTTTTAACTCTTTCTATGAATTGGCCCAGTCGACACACTAATGTGAAAAT AAAATAAACCACCCCCATTAAGTACTATCATTATTTCGCTACGTACTCCC TTGAGAAGGGGGACTTATCTTTCTCAGTAATTTACACTATCAAGTACATC ACGCTACGACACGATTGTGACGAAGATATACCCATTTTTATACCCCATGT TTTTTGCTTTTCGGCTCGGGTACCCTCGTTGGCATAAAGGGTAATTATTG CAAAAAAGGATCGGTTCTTGTCGGAAAAGGCCCCTACAGGAGTATATTGG TCATTCGTAAGTGTGTTGGAACACTTACTAGCTTATTGTGTAGGTTTCGA GGAAGAATTGGGAGGCGGTAGATGAGGGGTGGGGGGAGACGAGGGGATGG GAGGGGAAGGGATCGACCCCAGGATGGGTGCGTTATGTATGTTAATGTTA TATTTAGAATGTACCCTTAATTGTGACTTCACGGGATTATATAGGGTATA GTACGGTAGAGGTACAGTGGGCGTGGCACGGACGGGTCCCCATTCCCCTA TCCTATCCTATCATATAATATACTACCCTATCGCATCATATATCATTATA TCCTAACATATCATATCCTATTATATCCTATCATATCATATCCTACTCTA TACTATCCTATATATATATATAACCTATGCGTCGCGCAAGATGTTGCCGA GAAGCCCCGATGCGCGACCACTCTAGACACTCTTGCCGCCCTCGCCGTGT CCCGTCTCCATTCAACGAAGGGTTTCTTTTTCCGGAGCGGCGCGAGGTCG GTGGCGGCGACGCAGTGGGACCCCTCCGCCGAGGACCTCATACACGCGGA GGCATGTCTCCCCGAGGGGGCGCTTCGAGGCCTGAGGGACTCCGTGTTGC GGCTGGAAATGGACGCCGGGCTCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig62091:434..1559+

>mRNA_H-elongata_contig62091.13773.1 ID=mRNA_H-elongata_contig62091.13773.1|Name=mRNA_H-elongata_contig62091.13773.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig62091:434..1559+ (Himanthalia elongata Himel1 dioecious)
TCAGACGGGGCCGCAATTTCGGGGCGTCAAGATGATTCCGGCTGGGTTGC
ACTTGGCCCACTTCGGGACAGGCGAGGGCGAGAAGCAGTCAGACGGGGCC
GCAATTTCGGGGCGTCAAGATGATTCCGGCTGGGTTGCACTTGGCCCACT
TCGGGACAGGCGAGGGCGAGAAGCAGGGTTTCTTTTTCCGGAGCGGCGCG
AGGTCGGTGGCGGCGACGCAGTGGGACCCCTCCGCCGAGGACCTCATACA
CGCGGAGGCATGTCTCCCCGAGGGGGCGCTTCGAGGCCTGAGGGACTCCG
TGTTGCGGCTGGAAATGGACGCCGGGCTCGGGGTTTCTTTTTCCGGAGCG
GCGCGAGGTCGGTGGCGGCGACGCAGTGGGACCCCTCCGCCGAGGACCTC
ATACACGCGGAGGCATGTCTCCCCGAGGGGGCGCTTCGAGGCCTGAGGGA
CTCCGTGTTGCGGCTGGAAATGGACGCCGGGCTCGG
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