mRNA_H-elongata_contig6208.13771.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: D7FI52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI52_ECTSI) HSP 1 Score: 160 bits (404), Expect = 1.150e-44 Identity = 81/93 (87.10%), Postives = 87/93 (93.55%), Query Frame = 2
Query: 2 AHHRPEAVAALDDIRRLREAMQHVFEMEIELSRLGNTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
AHHRPEA+AA+DDIRRLREAMQHV EMEIEL RLG+ VSGRSIELKSA+KKRLS+PTMLELLTRL+I QPVWGLTQEERELVK AREKVNSC
Sbjct: 64 AHHRPEAIAAVDDIRRLREAMQHVSEMEIELGRLGDKVSGRSIELKSAIKKRLSSPTMLELLTRLKIKDQPVWGLTQEERELVKVAREKVNSC 156
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: A0A835YHU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHU4_9STRA) HSP 1 Score: 111 bits (278), Expect = 3.640e-26 Identity = 55/92 (59.78%), Postives = 74/92 (80.43%), Query Frame = 2
Query: 5 HHRPEAVAALDDIRRLREAMQHVFEMEIELSRLGNTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
HHRPEAVA+ +DI RL+ M+ V ME EL++ N+++ R+IE+K LKK LS+P M+ELL RLEI S+PVWGLTQ+ER+LV++AR KVN+C
Sbjct: 61 HHRPEAVASQEDIERLKAVMEDVMGMESELAK-ANSLNARTIEIKGNLKKTLSSPAMMELLNRLEIQSEPVWGLTQKERDLVRSARRKVNTC 151
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: A0A835Z526_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z526_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 5.270e-22 Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 2
Query: 5 HHRPEAVAALDDIRRLREAMQHVFEMEIELSRLGNTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
HHRPEAVAAL+DI RL A+ T++ +IE+KS LKK LS+P M+ELL RLEIN++PVWGLTQ ERE+V+ AR KVN+C
Sbjct: 35 HHRPEAVAALEDIARL-SAIXXXXXXXXXXXXXXXTLNAHTIEIKSTLKKTLSSPAMIELLNRLEINAEPVWGLTQAEREMVRTARRKVNTC 125
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: A0A7S2R7N6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R7N6_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 3.890e-16 Identity = 46/97 (47.42%), Postives = 67/97 (69.07%), Query Frame = 2
Query: 2 AHHRPEAVAALDDIRRLREAMQHVFEMEIELSRL----GNTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
AHH PEA+ L DIR L + M V +E +L+ G++V+ +SIELK+A+K+++S+ M +LL RLEIN P WGL+ +ER+LV AR+K N+C
Sbjct: 85 AHH-PEAIVELQDIRLLEQVMSEVATLEDQLATSMATHGSSVNEQSIELKAAIKRKMSSKAMAQLLDRLEINGTPRWGLSTKERKLVNLARDKFNAC 180
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: A0A4D9CV18_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV18_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 4.840e-16 Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 2
Query: 8 HRPEAVAALDDIRRLREAMQHVFEMEIELSRLGNTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
HRPEAVA DI+ LR M+ V E+E++L + I +KSA+KK+ S M ELL RLE+ QPVWGL+ ER+LVK AR + NSC
Sbjct: 74 HRPEAVAHAADIKSLRMLMEEVEELEVQLRSADELP--KQISIKSAIKKKASGRDMTELLKRLELKGQPVWGLSVSERDLVKEARRRFNSC 162
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: A0A7S4K9H6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K9H6_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 5.770e-16 Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 2
Query: 11 RPEAVAALDDIRRLREAMQHVFEMEIELSR----LGNTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
RPE +A D+ +++ MQ V +E L R ++GRSIEL+S++KK + AP E L RLEI PVWGL+ EER+L+ AAREKVN C
Sbjct: 63 RPEMLALAADVTKIQAVMQEVETLESLLDREKEESKGEITGRSIELRSSIKKLMVAPEFTECLNRLEIQGSPVWGLSSEERDLIHAAREKVNEC 156
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: A0A7S2IEF3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IEF3_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 2.090e-15 Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 2
Query: 2 AHHRPEAVAALDDIRRLREAMQHVFEMEIELSRLGNTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
+ HRPE A +D+ +L M V +E L + V+ RSIEL+ ++KK +++P +++ L RLEI +PVWGLT EER+LVK AR KVN C
Sbjct: 65 SEHRPEMQAIAEDVTKLSSIMGEVETLE-HLLQSETEVTSRSIELRGSIKKLMTSPDVMDCLNRLEIQGEPVWGLTVEERDLVKFARSKVNEC 156
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: A0A1Z5KRA7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRA7_FISSO) HSP 1 Score: 80.1 bits (196), Expect = 2.030e-14 Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 2
Query: 23 VAALDDIRRLREAMQHVFEMEIELSRLGNT-VSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
+A D+ ++ + M V +E +L L N V+ +SIELKSA+KK ++ P++LE L RLE+ QPVWGL+ EERE++ AREKVN+C
Sbjct: 73 IALSQDVEKIEQVMTAVESLESQL--LDNAGVNSKSIELKSAIKKLMTDPSVLESLNRLELEGQPVWGLSTEEREMIIMAREKVNAC 157
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: A0A6V1NW11_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NW11_HETAK) HSP 1 Score: 76.6 bits (187), Expect = 1.210e-13 Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 2
Query: 14 PEAVAALDDIRRLREAMQHVFEMEIELSRLG-NTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
PEA+A +D++ L + M F++ +L+ VS +I LKS L+K L++ L+L+ RLEIN P WGL+Q+ER L+K ARE +N C
Sbjct: 24 PEALAHSEDVKALNKMMDKAFDIRDQLNNKSLQRVSAEAIALKSELRKLLTSKAALDLVNRLEINGSPKWGLSQDERSLLKEARETINKC 113
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Match: A0A6S9H6B1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9H6B1_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.210e-13 Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 2
Query: 2 AHHRPEAVAALDDIRRLREAMQHVFEME----IELSRLGNTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQPVWGLTQEERELVKAAREKVNSC 280
+ HRPE +A D++ + M V +E E ++ RSIEL+ ++KK +++P ++E L RLEI +PVWGL+ +ER+LVK AR K+N C
Sbjct: 69 SEHRPEMLALAADVQTISSIMVEVEMLENLLQSETEENQGAITSRSIELRGSIKKLMTSPDVMECLNRLEIQGEPVWGLSSDERDLVKLARSKINEC 165 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6208.13771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6208.13771.1 >prot_H-elongata_contig6208.13771.1 ID=prot_H-elongata_contig6208.13771.1|Name=mRNA_H-elongata_contig6208.13771.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp MQHVFEMEIELSRLGNTVSGRSIELKSALKKRLSAPTMLELLTRLEINSQback to top mRNA from alignment at H-elongata_contig6208:9496..10888+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6208.13771.1 ID=mRNA_H-elongata_contig6208.13771.1|Name=mRNA_H-elongata_contig6208.13771.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1393bp|location=Sequence derived from alignment at H-elongata_contig6208:9496..10888+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6208:9496..10888+ >mRNA_H-elongata_contig6208.13771.1 ID=mRNA_H-elongata_contig6208.13771.1|Name=mRNA_H-elongata_contig6208.13771.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig6208:9496..10888+ (Himanthalia elongata Himel1 dioecious)back to top |