mRNA_H-elongata_contig117634.1377.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Match: A0A843UCJ9_COLES (BED-type domain-containing protein n=4 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843UCJ9_COLES) HSP 1 Score: 55.5 bits (132), Expect = 1.180e-6 Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1
Query: 115 PELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACANLQL 279
P+LAYVA+RVLS +A GCERNWS G + + R+ S + KLV+ N++L
Sbjct: 645 PDLAYVAIRVLSQTTSATGCERNWSTFGLIHTKQRNRLKSARLEKLVFCHYNMRL 699
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Match: A0A7I8K756_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K756_SPIIN) HSP 1 Score: 55.1 bits (131), Expect = 1.580e-6 Identity = 30/94 (31.91%), Postives = 49/94 (52.13%), Query Frame = 1
Query: 28 GDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACANLQLMYREYVKGKE 309
GDF K+ + +L WW T G G P LA +A+R+LS +A GCER+ + + + + + +S L+Y NL+L R +K ++
Sbjct: 582 GDFGRKMAIRARHTLLPGEWWSTYGG-GCPNLARLAIRILSQTCSARGCERSRIPFEQMHSQRKNHLEHQRLSDLIYVRYNLRLQQRHLLKNRQ 674
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Match: A0A6G1D8I2_9ORYZ (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1D8I2_9ORYZ) HSP 1 Score: 53.9 bits (128), Expect = 3.560e-6 Identity = 37/104 (35.58%), Postives = 56/104 (53.85%), Query Frame = 1
Query: 7 QFARF--KAGDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACANLQLMYR---EYVKG 303
QF+ F K G FA + A + WWG+ G P LA VA+RVLS +++ ER WS + + K +++++T KLV+ +NL+L+ R Y KG
Sbjct: 214 QFSEFISKKGFFALPAAKQDAYNKDAIDWWGSYGSQ-TPNLAEVAMRVLSQPISSSSAERIWSTYEYIHSAKRNKLNAKTADKLVFIHSNLRLVSRVTESYKKG 316
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Match: A0A6G1BLP3_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1BLP3_9ORYZ) HSP 1 Score: 53.9 bits (128), Expect = 3.990e-6 Identity = 37/104 (35.58%), Postives = 56/104 (53.85%), Query Frame = 1
Query: 7 QFARF--KAGDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACANLQLMYR---EYVKG 303
QF+ F K G FA + A + WWG+ G P LA VA+RVLS +++ ER WS + + K +++++T KLV+ +NL+L+ R Y KG
Sbjct: 580 QFSEFISKKGFFALPAAKQDAYNKDAIDWWGSYGSQ-TPNLAEVAMRVLSQPISSSSAERIWSTYEYIHSAKRNKLNAKTADKLVFIHSNLRLVSRVTESYKKG 682
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Match: UPI000DF4DD00 (uncharacterized protein LOC112899548 n=1 Tax=Panicum hallii TaxID=206008 RepID=UPI000DF4DD00) HSP 1 Score: 52.4 bits (124), Expect = 1.140e-5 Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 1
Query: 22 KAGDFAGKVFLEQARS--LTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACAN 270
K G FA KV + + A WW G +P L A+R+LS++ +A+GCERNWS + K R++ E + +LV+ N
Sbjct: 82 KVGHFAKKVAQAGCKDYDFSLAKWWSNYGTQ-VPTLQKFAIRILSLISSASGCERNWSCFEGIHTKKRNRLTCERVEQLVFVRFN 165
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Match: UPI001CF7C3F7 (uncharacterized protein LOC123019268 n=1 Tax=Varanus komodoensis TaxID=61221 RepID=UPI001CF7C3F7) HSP 1 Score: 52.4 bits (124), Expect = 1.390e-5 Identity = 27/96 (28.12%), Postives = 52/96 (54.17%), Query Frame = 1
Query: 1 MAQFARFKAGD--FAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACANLQLM 282
M A ++A + ++ + + +++ WW G +L+ VA+R+LS+ P AA C++NW ++ A K R+++E +KL+ NL L+
Sbjct: 529 MTDIAEYRAKEKLWSQDIIWRASENVSPLTWWK--GYCNTRQLSRVAIRILSIPPTAASCQKNWKAFNSINAKKRNRLTNERTAKLISVSQNLSLL 622
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Match: UPI001CB8B12A (uncharacterized protein LOC122603007 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8B12A) HSP 1 Score: 52.0 bits (123), Expect = 1.820e-5 Identity = 33/96 (34.38%), Postives = 51/96 (53.12%), Query Frame = 1
Query: 7 QFARF--KAGDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACANLQLMYR 288
Q+A F K G +A K A ++ WW T G P+LA VA++VLS +++ ERNWS + K R++S+ KLV+ +N++ R
Sbjct: 330 QYAFFHTKKGIYAKKTTQADAMTMDPIDWWSTYGS-ATPQLAEVAIKVLSQPISSSSAERNWSTYSHIHNVKRNRLNSKRADKLVFIHSNIRCQSR 424
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Match: UPI000B426496 (uncharacterized protein LOC8079746 n=1 Tax=Sorghum bicolor TaxID=4558 RepID=UPI000B426496) HSP 1 Score: 51.6 bits (122), Expect = 2.580e-5 Identity = 34/104 (32.69%), Postives = 55/104 (52.88%), Query Frame = 1
Query: 7 QFARF--KAGDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACANLQLMYR---EYVKG 303
QF F K G +A + A ++ WW T G P+LA +A+++LS +++ ER WS V + K +++++ KLVY +NL+L+ R Y KG
Sbjct: 570 QFTHFISKKGMYALSSVKQDAYNMDAIDWWETYGSE-TPDLAAIAIKILSQPISSSSAERIWSTYEYVHSAKRNKLNAKNADKLVYIHSNLRLLSRATESYKKG 672
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Match: A0A803N423_CHEQI (Transmembrane protein 147 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803N423_CHEQI) HSP 1 Score: 51.6 bits (122), Expect = 2.610e-5 Identity = 36/107 (33.64%), Postives = 56/107 (52.34%), Query Frame = 1
Query: 7 QFARFKA-----GDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACANLQLMYREYVKGKEA 312
Q A+F+A G A K+ A +++ +WW T G PELA +A++VLS +++ ER WS + K R++S KLV+ N++L+ R KEA
Sbjct: 519 QLAKFQAKEGIFGSLAAKI---DAVTMSPISWWSTYGSEA-PELAEIAIKVLSQPISSSSAERVWSTYSFIHNAKRNRLNSVRADKLVFIHCNIRLISRFTSYYKEA 621 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig117634.1377.1 >prot_H-elongata_contig117634.1377.1 ID=prot_H-elongata_contig117634.1377.1|Name=mRNA_H-elongata_contig117634.1377.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp MAQFARFKAGDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSback to top mRNA from alignment at H-elongata_contig117634:680..997- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig117634.1377.1 ID=mRNA_H-elongata_contig117634.1377.1|Name=mRNA_H-elongata_contig117634.1377.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig117634:680..997- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig117634:680..997- >mRNA_H-elongata_contig117634.1377.1 ID=mRNA_H-elongata_contig117634.1377.1|Name=mRNA_H-elongata_contig117634.1377.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig117634:680..997- (Himanthalia elongata Himel1 dioecious)back to top |