mRNA_H-elongata_contig6207.13770.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6207.13770.1
Unique NamemRNA_H-elongata_contig6207.13770.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6207.13770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6207contigH-elongata_contig6207:9076..10331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_001340.1
Exons2
Model size808
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6207.13770.1prot_H-elongata_contig6207.13770.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6207 9287..9697 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931001.3217134-UTR-H-elongata_contig6207:9075..92861622931001.3217134-UTR-H-elongata_contig6207:9075..9286Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6207 9076..9286 -
1691679657.4422479-UTR-H-elongata_contig6207:9075..92861691679657.4422479-UTR-H-elongata_contig6207:9075..9286Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6207 9076..9286 -
1622931001.3524222-UTR-H-elongata_contig6207:9697..97501622931001.3524222-UTR-H-elongata_contig6207:9697..9750Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6207 9698..9750 -
1691679657.4713318-UTR-H-elongata_contig6207:9697..97501691679657.4713318-UTR-H-elongata_contig6207:9697..9750Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6207 9698..9750 -
1622931001.3645525-UTR-H-elongata_contig6207:10198..103311622931001.3645525-UTR-H-elongata_contig6207:10198..10331Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6207 10199..10331 -
1691679657.4812038-UTR-H-elongata_contig6207:10198..103311691679657.4812038-UTR-H-elongata_contig6207:10198..10331Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6207 10199..10331 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931001.3375187-CDS-H-elongata_contig6207:9286..96971622931001.3375187-CDS-H-elongata_contig6207:9286..9697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6207 9287..9697 -
1691679657.458909-CDS-H-elongata_contig6207:9286..96971691679657.458909-CDS-H-elongata_contig6207:9286..9697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6207 9287..9697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6207.13770.1

>prot_H-elongata_contig6207.13770.1 ID=prot_H-elongata_contig6207.13770.1|Name=mRNA_H-elongata_contig6207.13770.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MAAAGWLLSRRGSPSSAIARFPLAVQAATASAVLLVAATTDEDIMSAMRG
LDDSPPGSSIPSQGKPEVTLNIPSIPNGETKGLPQNGVVSSGDARTGNGG
GGVFQSGGVLELRGDSELMRSLAGGPRQAGPLTHGF*
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mRNA from alignment at H-elongata_contig6207:9076..10331-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6207.13770.1 ID=mRNA_H-elongata_contig6207.13770.1|Name=mRNA_H-elongata_contig6207.13770.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1256bp|location=Sequence derived from alignment at H-elongata_contig6207:9076..10331- (Himanthalia elongata Himel1 dioecious)
ACGGCTATCGCCCCGAGAGGGATAGCCGTTGGTAAGAGCAATCCAAGAGG
GCATGCGAAGACAGTGGCAGTAAAGTCAGCTTCCAGGGGGGAAATCGCCG
AGGCGGATACGGAGGCAAAGCTTGTGCAAAAGGGTGCGCTGTCCGCGTGC
TTGTTCTGAGCTGTTCTTACCCGTACCGTCAAACGTTTACCTCAATAGGT
TACCTATTCGTTTCCTCTTTGTTTTGATGCCTCACCGGAACCCTCTCCCG
GCATTTTGCGAGCGCTCTGTCAACCCGTACTAGTTTTGATAAGACCTCGG
CCTTAAACCTTGAGGGGCACTCGCCCTTTGCCGTAAAGGCGATCGGCGAC
ATGTCACAAATCACGACCACAAACTTCGCGTGCCGAATCCGTGCTCGTTG
TCACGTTTTAAGTCTCGCTCGTGCAACCCATGCAGCCTCTTCACTTCTAT
GTAGGAACAAAGGCCCATATTCCCGAGGACACGTGGTCAATGGTCTACCA
GCCAAGGCATGTACCGGTACAATTTAACCCCCCCCCCCTCTCTCTCTGTG
TTCCCTACCCCGAAAATTCACCATGTTGCAGCCAACGATGGCGGTGGCCA
CTGTGGTTTCGGCGAATTCCTCTCCTGCTTTCCCATGGCGGCCGCAGGGT
GGTTGTTATCGCGACGCGGCTCTCCTTCATCAGCCATAGCCCGGTTTCCG
TTGGCGGTTCAAGCGGCAACGGCCTCAGCAGTGTTGCTCGTAGCCGCCAC
AACGGATGAGGATATCATGTCGGCCATGCGAGGACTAGACGACTCCCCGC
CTGGGTCGTCCATTCCTTCTCAGGGGAAGCCAGAGGTTACCCTTAACATT
CCTTCCATCCCTAACGGAGAGACCAAGGGCTTACCCCAAAACGGAGTGGT
ATCGAGTGGCGATGCTCGGACGGGGAACGGGGGTGGGGGGGTGTTCCAAA
GCGGAGGTGTGCTTGAACTGAGGGGTGATTCGGAGTTGATGCGGTCGTTG
GCTGGGGGCCCGCGGCAAGCGGGGCCTTTGACTCACGGGTTTTGAAATAT
TTAACCAGTGCGTGTAGTCGTTTGGTGCCGTATGAGCGGAGAGCTAACCG
CGTCCGACACTTGGACGTATTTTTTACGAAGTATATCGAGAGATGAATGA
CACAATTCTAGTAGCGCTGCCTATCGGAGTTCAAGGGCCAACTTACCCCC
TAACCCTACGATGAGGAGCCATTTTTGTCAACCTCGAGGGAAAGAGGCGG
TTCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig6207:9076..10331-

>mRNA_H-elongata_contig6207.13770.1 ID=mRNA_H-elongata_contig6207.13770.1|Name=mRNA_H-elongata_contig6207.13770.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig6207:9076..10331- (Himanthalia elongata Himel1 dioecious)
ATGGCGGCCGCAGGGTGGTTGTTATCGCGACGCGGCTCTCCTTCATCAGC
CATAGCCCGGTTTCCGTTGGCGGTTCAAGCGGCAACGGCCTCAGCAGTGT
TGCTCGTAGCCGCCACAACGGATGAGGATATCATGTCGGCCATGCGAGGA
CTAGACGACTCCCCGCCTGGGTCGTCCATTCCTTCTCAGGGGAAGCCAGA
GGTTACCCTTAACATTCCTTCCATCCCTAACGGAGAGACCAAGGGCTTAC
CCCAAAACGGAGTGGTATCGAGTGGCGATGCTCGGACGGGGAACGGGGGT
GGGGGGGTGTTCCAAAGCGGAGGTGTGCTTGAACTGAGGGGTGATTCGGA
GTTGATGCGGTCGTTGGCTGGGGGCCCGCGGCAAGCGGGGCCTTTGACTC
ACGGGTTTTGAATGGCGGCCGCAGGGTGGTTGTTATCGCGACGCGGCTCT
CCTTCATCAGCCATAGCCCGGTTTCCGTTGGCGGTTCAAGCGGCAACGGC
CTCAGCAGTGTTGCTCGTAGCCGCCACAACGGATGAGGATATCATGTCGG
CCATGCGAGGACTAGACGACTCCCCGCCTGGGTCGTCCATTCCTTCTCAG
GGGAAGCCAGAGGTTACCCTTAACATTCCTTCCATCCCTAACGGAGAGAC
CAAGGGCTTACCCCAAAACGGAGTGGTATCGAGTGGCGATGCTCGGACGG
GGAACGGGGGTGGGGGGGTGTTCCAAAGCGGAGGTGTGCTTGAACTGAGG
GGTGATTCGGAGTTGATGCGGTCGTTGGCTGGGGGCCCGCGGCAAGCGGG
GCCTTTGACTCACGGGTTTTGA
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