mRNA_H-elongata_contig62027.13768.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62027.13768.1
Unique NamemRNA_H-elongata_contig62027.13768.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62027.13768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62027contigH-elongata_contig62027:2541..3186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size646
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62027.13768.1prot_H-elongata_contig62027.13768.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62027 2747..3136 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931001.0774755-UTR-H-elongata_contig62027:2540..27461622931001.0774755-UTR-H-elongata_contig62027:2540..2746Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62027 2541..2746 +
1691679657.3838725-UTR-H-elongata_contig62027:2540..27461691679657.3838725-UTR-H-elongata_contig62027:2540..2746Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62027 2541..2746 +
1622931001.1602778-UTR-H-elongata_contig62027:3136..31861622931001.1602778-UTR-H-elongata_contig62027:3136..3186Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62027 3137..3186 +
1691679657.4061322-UTR-H-elongata_contig62027:3136..31861691679657.4061322-UTR-H-elongata_contig62027:3136..3186Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig62027 3137..3186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931001.1000721-CDS-H-elongata_contig62027:2746..31361622931001.1000721-CDS-H-elongata_contig62027:2746..3136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62027 2747..3136 +
1691679657.394137-CDS-H-elongata_contig62027:2746..31361691679657.394137-CDS-H-elongata_contig62027:2746..3136Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62027 2747..3136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62027.13768.1

>prot_H-elongata_contig62027.13768.1 ID=prot_H-elongata_contig62027.13768.1|Name=mRNA_H-elongata_contig62027.13768.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
MLPYGGSWRSLLAYFRCEPFLAFSLKACFLLLLLAGGDDVSSPHVVSRHV
TYRLGDAKTAVHFFCRGEIVEREMTMGGGGKQLRGIIVPGRGDLSIEPLP
SRPTISAPFVVFFLVEREGYFFSPRFRCR*
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mRNA from alignment at H-elongata_contig62027:2541..3186+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62027.13768.1 ID=mRNA_H-elongata_contig62027.13768.1|Name=mRNA_H-elongata_contig62027.13768.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=646bp|location=Sequence derived from alignment at H-elongata_contig62027:2541..3186+ (Himanthalia elongata Himel1 dioecious)
CGCTGTTTTAATGAGTTTTCGCGGGTTTCGAGAGCGAACAAGTCGTTCTC
CTTGCCGCGGCTGGCTGCAGACGTCATGGGTGAGGGCGCCAAGCGGCGGT
TGATGGCTGGTATTTACCAATGGTGACGCTATTTTCGATCGAAATCCACA
CGTGTTAGCGGGAGAGGGTTGAAGGGGAGACAGCGCCATCGTCCGAGTCA
TCGGCAATGCTGCCGTATGGTGGAAGTTGGAGAAGCTTGCTCGCCTATTT
CCGTTGCGAACCATTTCTGGCGTTCTCCTTGAAGGCGTGTTTCCTGCTGC
TCTTGCTCGCTGGTGGTGATGATGTGTCATCACCCCACGTCGTTTCCCGC
CACGTTACCTACCGTCTCGGCGATGCAAAAACCGCCGTGCATTTTTTTTG
CCGTGGTGAAATCGTTGAACGAGAAATGACGATGGGGGGGGGAGGCAAGC
AACTCCGGGGAATAATTGTGCCTGGCCGCGGTGATCTCTCCATAGAACCT
CTTCCTTCACGCCCAACAATCTCGGCTCCATTTGTTGTATTTTTTTTGGT
AGAGCGGGAGGGATATTTTTTTTCTCCCCGATTTCGTTGTCGTTGATCGA
TCTGCGCGTCTCGCGAGGGAGTTCCTGGTTGTAGAAGCGTTTTGCG
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Coding sequence (CDS) from alignment at H-elongata_contig62027:2541..3186+

>mRNA_H-elongata_contig62027.13768.1 ID=mRNA_H-elongata_contig62027.13768.1|Name=mRNA_H-elongata_contig62027.13768.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig62027:2541..3186+ (Himanthalia elongata Himel1 dioecious)
ATGCTGCCGTATGGTGGAAGTTGGAGAAGCTTGCTCGCCTATTTCCGTTG
CGAACCATTTCTGGCGTTCTCCTTGAAGGCGTGTTTCCTGCTGCTCTTGC
TCGCTGGTGGTGATGATGTGTCATCACCCCACGTCGTTTCCCGCCACGTT
ACCTACCGTCTCGGCGATGCAAAAACCGCCGTGCATTTTTTTTGCCGTGG
TGAAATCGTTGAACGAGAAATGACGATGGGGGGGGGAGGCAAGCAACTCC
GGGGAATAATTGTGCCTGGCCGCGGTGATCTCTCCATAGAACCTCTTCCT
TCACGCCCAACAATCTCGGCTCCATTTGTTGTATTTTTTTTGGTAGAGCG
GGAGGGATATTTTTTTTCTCCCCGATTTCGTTGTCGTTGAATGCTGCCGT
ATGGTGGAAGTTGGAGAAGCTTGCTCGCCTATTTCCGTTGCGAACCATTT
CTGGCGTTCTCCTTGAAGGCGTGTTTCCTGCTGCTCTTGCTCGCTGGTGG
TGATGATGTGTCATCACCCCACGTCGTTTCCCGCCACGTTACCTACCGTC
TCGGCGATGCAAAAACCGCCGTGCATTTTTTTTGCCGTGGTGAAATCGTT
GAACGAGAAATGACGATGGGGGGGGGAGGCAAGCAACTCCGGGGAATAAT
TGTGCCTGGCCGCGGTGATCTCTCCATAGAACCTCTTCCTTCACGCCCAA
CAATCTCGGCTCCATTTGTTGTATTTTTTTTGGTAGAGCGGGAGGGATAT
TTTTTTTCTCCCCGATTTCGTTGTCGTTGA
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