mRNA_H-elongata_contig62022.13766.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig62022.13766.1
Unique NamemRNA_H-elongata_contig62022.13766.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig62022.13766.1 vs. uniprot
Match: D8LF36_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF36_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 1.510e-38
Identity = 169/245 (68.98%), Postives = 188/245 (76.73%), Query Frame = 1 
Query:   16 VAQECWEAYHEKTAEKCLHCQGPVAHLPGRFSGKHFVSIDPPGKVHSECWEAFNRCRPPTXXXXXXXXXXXXXXXXXXXNYVELENGIKLHAECRAAYHNAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKAVRKKEAFSGDFMLVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVDRKPDDAGGEASQAKVHMECFEAYQAMLAAEGEGS 750
            + QECWE YHEK + KCLHC+GPVAHLPGRF+GK + S DPP          +   +P                     +YV L +GIK+H ECR+AYH    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KAVR+ E FSGDFM++DGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVDRK  DA GE +++KVHMECFEAYQA LA +G+GS
Sbjct:   45 IHQECWEKYHEKCSVKCLHCEGPVAHLPGRFNGKFYPSTDPPXXXXXXXXXXYKGSKPAAEKCGECGEPLSFVEGKFSGSYVTLGDGIKVHVECRSAYHQKHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVRRMEGFSGDFMMIDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVDRKLGDAEGEDNESKVHMECFEAYQAQLAEKGKGS 289
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BLAST of mRNA_H-elongata_contig62022.13766.1 vs. uniprot
Match: A0A835YPW2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPW2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.070e-8
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   16 VAQECWEAYHEKTAEKCLHCQGPVAHLPGRFSGKHFV 126
            +  ECWE Y ++ AEKC+HC+GPVA +PGR+SGK F 
Sbjct:   44 IHTECWEVYQDRNAEKCMHCKGPVAQIPGRYSGKFFA 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62022.13766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF36_ECTSI1.510e-3868.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YPW2_9STRA4.070e-859.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62022contigH-elongata_contig62022:103..2089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue1.8e-32
Seed eggNOG ortholog2880.D8LF36
EggNOG OGs2EZ5B@1,2T0IG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_001510.1
Exons4
Model size756
Cds size756
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62022.13766.1prot_H-elongata_contig62022.13766.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig62022 103..2089 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931000.8562646-CDS-H-elongata_contig62022:102..2571622931000.8562646-CDS-H-elongata_contig62022:102..257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62022 103..257 +
1691679657.2924647-CDS-H-elongata_contig62022:102..2571691679657.2924647-CDS-H-elongata_contig62022:102..257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62022 103..257 +
1622931000.8757434-CDS-H-elongata_contig62022:542..6761622931000.8757434-CDS-H-elongata_contig62022:542..676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62022 543..676 +
1691679657.3024514-CDS-H-elongata_contig62022:542..6761691679657.3024514-CDS-H-elongata_contig62022:542..676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62022 543..676 +
1622931000.8925934-CDS-H-elongata_contig62022:1209..14631622931000.8925934-CDS-H-elongata_contig62022:1209..1463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62022 1210..1463 +
1691679657.318824-CDS-H-elongata_contig62022:1209..14631691679657.318824-CDS-H-elongata_contig62022:1209..1463Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62022 1210..1463 +
1622931000.911938-CDS-H-elongata_contig62022:1876..20891622931000.911938-CDS-H-elongata_contig62022:1876..2089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62022 1877..2089 +
1691679657.3320544-CDS-H-elongata_contig62022:1876..20891691679657.3320544-CDS-H-elongata_contig62022:1876..2089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig62022 1877..2089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig62022.13766.1

>prot_H-elongata_contig62022.13766.1 ID=prot_H-elongata_contig62022.13766.1|Name=mRNA_H-elongata_contig62022.13766.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp
MFHAGVAQECWEAYHEKTAEKCLHCQGPVAHLPGRFSGKHFVSIDPPGKV
HSECWEAFNRCRPPTEKCSQCDEPLMNLAGKFSGNYVELENGIKLHAECR
AAYHNAKTEKCLQCSEPVAPEKGKFSGGYFEIEGKGRVHAECQDEYAEAT
ADKCLVCKKAVRKKEAFSGDFMLVDGGKVHKECASEYQEMMADKCLYCNK
GVRKTSDFSGAFYPVDRKPDDAGGEASQAKVHMECFEAYQAMLAAEGEGS
G*
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mRNA from alignment at H-elongata_contig62022:103..2089+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig62022.13766.1 ID=mRNA_H-elongata_contig62022.13766.1|Name=mRNA_H-elongata_contig62022.13766.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1987bp|location=Sequence derived from alignment at H-elongata_contig62022:103..2089+ (Himanthalia elongata Himel1 dioecious)
ATGTTTCACGCTGGGGTGGCGCAGGAGTGCTGGGAAGCCTACCACGAGAA
GACCGCCGAGAAGTGTCTCCACTGCCAAGGGCCCGTGGCGCACCTTCCGG
GCCGGTTCAGCGGCAAGCATTTCGTGAGCATTGACCCTCCCGGCAAAGTG
CATAGGTGAGTAAGCGAAAACGCAATGGCTTCTCTGCGGTGAGATATCGC
CTTTGCAGTTCCTGTCGGTGAAACGGCCTCGCAAAGTACAGGGTCACGTG
GTAATGTCGCAGCGAAGGCGTCTCACGGAAAGAGTCGAACATCAGCCCAC
GAAGCCTGAGGCGTGAATTCGAGAAATCCCAGTCCGCCCGACCTGAAGGC
TCAAACGAGCCAAAATCCCCAACGAAGGCCTTCCGAAAATCCACTCACAG
GGTACACTCTCGCCACGGGCTTCGTGCGTACTGTCGACAGTGAATGCTGG
GAAGCGTTCAATCGCTGCAGGCCTCCAACGGAAAAATGCAGCCAATGCGA
CGAGCCGCTGATGAACTTGGCGGGCAAGTTCAGTGGGAACTACGTCGAGC
TCGAGAACGGGATCAAGCTTCACGGTGCGCCACGCCGCCCTTTCCCACTT
ACCTGTAGCTGATCCATTACCGCCCAAGAGTGACGTGACGGTGCGCACAT
CCTTCACAGGGATTGCGATTTGGACCCTTTTTTGTTCGTAGCGACTAGCA
AGAATCTGGAGAGATTATAAGGGTTACACCTGGTAGTTTTCATCGCCAAC
GTGTTGCCGTCGCGCGGATGCGTGTAACGGGACAACGGTAACTATAATAA
ACATGGTGCGCTTCTTTCACTGCCGACCGAGAGAGGAACGCCGGAGGTCA
TGCACGTGACTGGCTACTGACCATGCAAAGGCCTAACTGGTCGGCAAAAA
TTGAGCATGCAGAATCGTAACACCTCCTTCCTCTGAAGAACACCCCTTTG
CTCTGATCCGCTACTCCCCCACCCCCCCCCCCCTCCACCCCTCCCCCNNN
NNNNNNNAATTGAGCAACCAAAATCCTAACCCCCCCCTCCCCTCAAAAAA
CCCCCTTTTTTCTCCCCCCCCCCCCCCCCCCCCCCCCCCACCCATCGCCT
GTTCCAGCGGAGTGTCGAGCAGCTTACCACAATGCCAAGACGGAAAAATG
CTTGCAATGCTCTGAGCCCGTCGCGCCCGAAAAGGGCAAGTTCAGCGGAG
GTTACTTTGAGATAGAAGGGAAGGGTCGCGTTCACGCCGAGTGCCAAGAT
GAGTACGCGGAAGCGACGGCTGACAAGTGCCTGGTGTGCAAAAAAGCCGT
CCGGAAGAAGGAAGCGTTCTCCGGAGACTTCATGCTGGTTGACGGAGGCA
AAGTCCACAAGGTAGTAAACGGCTGTTGGAGAGGAGCCCATCCATTCGTT
CGGGCTGGTCTGATCTACTCTGGTCTCGCCCTCGGATTTTTCTCTCAAGA
AGTCACGGCAGATTACCAATGTCTCATGCACATTTACACACCTCGCCTGA
AAACCCACTGTTCCAAGGCGACGAGTACGAGTTAGAACCCGTGACGGAAG
CGTTGCGCGTGAAAATCGGCAGCGCCAAGCTCTAAGATCGCATTAAAAAC
TAATATTGTGGGGTTTTACGTGGCGACACTATATATATATATATATATCC
TGCATATGCTAGAAAACGTAACAAAAACAAACAAATCGATGCAAAGGGAA
CGCGAGCGAGAGAGTGCGGGTGGTAACTTATCGGTCCGCTGTTTTCTACC
TTTCGTTTCCGTTCTGATTTTCAGGAGTGCGCGTCAGAGTATCAAGAAAT
GATGGCGGACAAGTGCTTGTATTGTAACAAGGGGGTCCGAAAGACCAGCG
ATTTCAGCGGCGCTTTCTACCCGGTGGATCGGAAACCCGACGACGCGGGA
GGAGAGGCAAGCCAAGCCAAGGTGCACATGGAATGCTTCGAGGCGTACCA
AGCCATGCTCGCGGCGGAGGGCGAAGGATCAGGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig62022:103..2089+

>mRNA_H-elongata_contig62022.13766.1 ID=mRNA_H-elongata_contig62022.13766.1|Name=mRNA_H-elongata_contig62022.13766.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at H-elongata_contig62022:103..2089+ (Himanthalia elongata Himel1 dioecious)
ATGTTTCACGCTGGGGTGGCGCAGGAGTGCTGGGAAGCCTACCACGAGAA
GACCGCCGAGAAGTGTCTCCACTGCCAAGGGCCCGTGGCGCACCTTCCGG
GCCGGTTCAGCGGCAAGCATTTCGTGAGCATTGACCCTCCCGGCAAAGTG
CATAGATGTTTCACGCTGGGGTGGCGCAGGAGTGCTGGGAAGCCTACCAC
GAGAAGACCGCCGAGAAGTGTCTCCACTGCCAAGGGCCCGTGGCGCACCT
TCCGGGCCGGTTCAGCGGCAAGCATTTCGTGAGCATTGACCCTCCCGGCA
AAGTGCATAGTGAATGCTGGGAAGCGTTCAATCGCTGCAGGCCTCCAACG
GAAAAATGCAGCCAATGCGACGAGCCGCTGATGAACTTGGCGGGCAAGTT
CAGTGGGAACTACGTCGAGCTCGAGAACGGGATCAAGCTTCACGTGAATG
CTGGGAAGCGTTCAATCGCTGCAGGCCTCCAACGGAAAAATGCAGCCAAT
GCGACGAGCCGCTGATGAACTTGGCGGGCAAGTTCAGTGGGAACTACGTC
GAGCTCGAGAACGGGATCAAGCTTCACGCGGAGTGTCGAGCAGCTTACCA
CAATGCCAAGACGGAAAAATGCTTGCAATGCTCTGAGCCCGTCGCGCCCG
AAAAGGGCAAGTTCAGCGGAGGTTACTTTGAGATAGAAGGGAAGGGTCGC
GTTCACGCCGAGTGCCAAGATGAGTACGCGGAAGCGACGGCTGACAAGTG
CCTGGTGTGCAAAAAAGCCGTCCGGAAGAAGGAAGCGTTCTCCGGAGACT
TCATGCTGGTTGACGGAGGCAAAGTCCACAAGCGGAGTGTCGAGCAGCTT
ACCACAATGCCAAGACGGAAAAATGCTTGCAATGCTCTGAGCCCGTCGCG
CCCGAAAAGGGCAAGTTCAGCGGAGGTTACTTTGAGATAGAAGGGAAGGG
TCGCGTTCACGCCGAGTGCCAAGATGAGTACGCGGAAGCGACGGCTGACA
AGTGCCTGGTGTGCAAAAAAGCCGTCCGGAAGAAGGAAGCGTTCTCCGGA
GACTTCATGCTGGTTGACGGAGGCAAAGTCCACAAGGAGTGCGCGTCAGA
GTATCAAGAAATGATGGCGGACAAGTGCTTGTATTGTAACAAGGGGGTCC
GAAAGACCAGCGATTTCAGCGGCGCTTTCTACCCGGTGGATCGGAAACCC
GACGACGCGGGAGGAGAGGCAAGCCAAGCCAAGGTGCACATGGAATGCTT
CGAGGCGTACCAAGCCATGCTCGCGGCGGAGGGCGAAGGATCAGGATAGG
AGTGCGCGTCAGAGTATCAAGAAATGATGGCGGACAAGTGCTTGTATTGT
AACAAGGGGGTCCGAAAGACCAGCGATTTCAGCGGCGCTTTCTACCCGGT
GGATCGGAAACCCGACGACGCGGGAGGAGAGGCAAGCCAAGCCAAGGTGC
ACATGGAATGCTTCGAGGCGTACCAAGCCATGCTCGCGGCGGAGGGCGAA
GGATCAGGATAG
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