prot_H-elongata_contig62016.13765.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig62016.13765.1
Unique Nameprot_H-elongata_contig62016.13765.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length59
Homology
BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: D7G787_ECTSI (Exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G787_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 8.120e-22
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNK 51
            QVIDTV+LWSL+GQRKISLRFLAHYLL +NIQGETHDSIEDARIALALYNK
Sbjct:  978 QVIDTVHLWSLAGQRKISLRFLAHYLLKINIQGETHDSIEDARIALALYNK 1028          
BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: A0A6H5KX54_9PHAE (Exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX54_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 8.140e-22
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNK 51
            QVIDTV+LWSL+GQRKISLRFLAHYLL +NIQGETHDSIEDARIALALYNK
Sbjct: 1541 QVIDTVHLWSLAGQRKISLRFLAHYLLKINIQGETHDSIEDARIALALYNK 1591          
BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: K8ZCB7_NANGC (PAB-dependent poly(A)-specific ribonuclease subunit 2 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8ZCB7_NANGC)

HSP 1 Score: 84.0 bits (206), Expect = 9.470e-18
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 0
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKVSKLTRE 58
            QVIDTV+LW L GQRKISLRFLA YLLG +IQGETHDSIEDAR A+ LY K  +  +E
Sbjct:  268 QVIDTVDLWCLEGQRKISLRFLAAYLLGESIQGETHDSIEDARTAVRLYQKWEEAKKE 325          
BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: A0A4D9D4P1_9STRA (Exonuclease domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4P1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.740e-17
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 0
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKVSKLTRE 58
            QVIDTV+LW L GQRKISLRFLA YLLG +IQGETHDSIEDAR A+ LY K  +  +E
Sbjct:  866 QVIDTVDLWCLEGQRKISLRFLAAYLLGESIQGETHDSIEDARTAVRLYQKWEEAKKE 923          
BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: UPI00146AB144 (PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like n=1 Tax=Trematomus bernacchii TaxID=40690 RepID=UPI00146AB144)

HSP 1 Score: 76.3 bits (186), Expect = 1.850e-15
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 0
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKVSKLTR 57
            QV+DTV+L+ L  +R ISLRFLA Y L +NIQGETHDSIEDAR ALALY K  +L+R
Sbjct:   95 QVVDTVHLFHLPRKRMISLRFLAWYFLELNIQGETHDSIEDARTALALYRKYLELSR 151          
BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: A0A1B0DR70_PHLPP (Exonuclease domain-containing protein n=1 Tax=Phlebotomus papatasi TaxID=29031 RepID=A0A1B0DR70_PHLPP)

HSP 1 Score: 72.0 bits (175), Expect = 3.510e-15
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 0
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKVSKLTRE 58
            QVIDTV+L+ L  QR +SLRFLA + LG+ IQ ETHDSIEDAR AL LY +  KL +E
Sbjct:    7 QVIDTVHLFHLPHQRMVSLRFLAWHFLGIKIQSETHDSIEDARAALQLYKEYVKLQKE 64          
BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: A0A250WW57_9CHLO (Exonuclease domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WW57_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 4.770e-15
Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 0
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKVSKLTRE 58
            Q IDT  L+SL  QRK+SLRFLA YLLG+NIQG THD+IEDAR AL LY K  +L RE
Sbjct: 1331 QQIDTAELFSLRRQRKLSLRFLASYLLGINIQGGTHDAIEDARTALWLYQKYMQLQRE 1388          
BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: A0A7S0S9V1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0S9V1_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 8.630e-15
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 0
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKVSKLTRE 58
            Q++DTV L+    QRK+SLRFLA YLLG++IQ ETHDSIEDAR A+ LY+K  +L RE
Sbjct:  347 QIVDTVELFHFKRQRKLSLRFLASYLLGLDIQQETHDSIEDARTAVRLYDKYLELVRE 404          
BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: UPI001469CF39 (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=1 Tax=Pseudochaenichthys georgianus TaxID=52239 RepID=UPI001469CF39)

HSP 1 Score: 76.3 bits (186), Expect = 8.850e-15
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 0
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKVSKLTR 57
            QV+DTV+L+ L  +R ISLRFLA Y L +NIQGETHDSIEDAR ALALY K  +L+R
Sbjct:  622 QVVDTVHLFHLPRKRMISLRFLAWYFLELNIQGETHDSIEDARTALALYRKYLELSR 678          
BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Match: UPI00097D7185 (PAB-dependent poly(A)-specific ribonuclease subunit PAN2-like n=1 Tax=Paralichthys olivaceus TaxID=8255 RepID=UPI00097D7185)

HSP 1 Score: 73.6 bits (179), Expect = 8.890e-15
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 0
Query:    1 QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYNKVSKLTR 57
            QV+DTV L+ L  +R ISLRFLA Y L +NIQGETHDSIEDAR AL LY K  +L+R
Sbjct:   86 QVVDTVYLFHLPRKRMISLRFLAWYFLDLNIQGETHDSIEDARTALQLYRKYLELSR 142          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62016.13765.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G787_ECTSI8.120e-2292.16Exonuclease domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KX54_9PHAE8.140e-2292.16Exonuclease domain-containing protein n=1 Tax=Ecto... [more]
K8ZCB7_NANGC9.470e-1872.41PAB-dependent poly(A)-specific ribonuclease subuni... [more]
A0A4D9D4P1_9STRA1.740e-1772.41Exonuclease domain-containing protein n=1 Tax=Nann... [more]
UPI00146AB1441.850e-1568.42PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
A0A1B0DR70_PHLPP3.510e-1563.79Exonuclease domain-containing protein n=1 Tax=Phle... [more]
A0A250WW57_9CHLO4.770e-1568.97Exonuclease domain-containing protein n=1 Tax=Chla... [more]
A0A7S0S9V1_9CHLO8.630e-1563.79Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
UPI001469CF398.850e-1568.42PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
UPI00097D71858.890e-1566.67PAB-dependent poly(A)-specific ribonuclease subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..59
e-value: 2.0E-13
score: 52.2
IPR013520Exonuclease, RNase T/DNA polymerase IIIPFAMPF00929RNase_Tcoord: 1..49
e-value: 2.8E-4
score: 21.4
NoneNo IPR availablePANTHERPTHR15728UBIQUITIN SPECIFIC PROTEASE 52 / POLY A RIBONUCLEASE SUBUNIT PAN2coord: 1..58
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62016contigH-elongata_contig62016:1070..1246 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62016.13765.1mRNA_H-elongata_contig62016.13765.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig62016 1070..1246 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig62016.13765.1 ID=prot_H-elongata_contig62016.13765.1|Name=mRNA_H-elongata_contig62016.13765.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
QVIDTVNLWSLSGQRKISLRFLAHYLLGMNIQGETHDSIEDARIALALYN
KVSKLTRER
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR013520Exonuclease_RNaseT/DNA_pol3
IPR012337RNaseH-like_sf