mRNA_H-elongata_contig61975.13761.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61975.13761.1
Unique NamemRNA_H-elongata_contig61975.13761.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61975.13761.1 vs. uniprot
Match: D8LAT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT1_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.050e-39
Identity = 136/366 (37.16%), Postives = 188/366 (51.37%), Query Frame = 1 
Query:    1 QAISTLLKEELDKIKASSESDRQGALLKKLQQVERRSGGLCNPDLLEKVVRSS----SCDKAPTPVLSTTPVSPAEPSRSALSSASRTSASRGSGDMMEVGLRTPVRGGAPMFFDIGSNDARSEGAGTAGDDVPWADDMLCGASRRRHAAMLRSRARALAKGLARLMTGVSSDLHGIASRLPPWEENDDNSEDEDEASFAENTTYIRNSIWVKIMTRPTGDGSAEPASRDQILRRERREG--NHIRLALEETGSLQ-SRSSFVSVDASESSSLGRLS----------------EPNASDTAASSTVPEPLMPTSTTSGRPGDLEAARRLDWKLDAEELSLIRREEERVMKPLVLARLLAAGATLDC 1029
            +AIS+LLK E+DK+ A++E +R+G +LKK +QVERRSGGLCNPDLLE +VRS+    S + +P+                +     + +A R    ++ V +    RGG       GS  A S GA     DVPWA+DMLC + R+RHAA+L++R RALAKGLAR++ GVS+D   +ASRLPPWEE +D+ ED+      E     R      I + PT +                     +++  A  E G+ + S SS  +  A+  SS G  +                 P +    A+                  +   +RR DWKL A+ELSLI++EEERVMKP VL  LLA GA+L C
Sbjct:  172 KAISSLLKSEMDKVVAAAEKERKGEMLKKFKQVERRSGGLCNPDLLENIVRSTGGEGSGESSPSAXXXXXXXXXXXXPPRSPDHKGQDAAIRALNSLVVVDVEKDERGGIAGVG--GSGGAVSSGA----QDVPWAEDMLCRSVRKRHAAVLKTRGRALAKGLARMLKGVSNDXXXVASRLPPWEECEDDDEDKPTPQ-EEGAELDRIRSRGNIFSAPTHEXXXXXXXXXXXXXXXXXXXXXSYVSAATSEDGNERLSLSSDTAPTAASISSNGSAAIRSPVAAMAXXXXXXXSPGSDAVPAAXXXXXXXXXXXXXXXXAANCVRSRRQDWKLSAQELSLIKKEEERVMKPDVLTTLLAKGASLGC 530
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BLAST of mRNA_H-elongata_contig61975.13761.1 vs. uniprot
Match: A0A6H5KYX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX3_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.120e-34
Identity = 126/367 (34.33%), Postives = 171/367 (46.59%), Query Frame = 1 
Query:   31 LDKIKASSESDRQGALLKKLQQVERRSGGLCNPDLLEKVVRSS----SCDKAPTPVLSTTPVSPAEPSRSALSSASRTSASRGSGDMMEVGLRTPVRGGAPMFFDIGSNDARSEGAGTAGDDVPWADDMLCGASRRRHAAMLRSRARALAKGLARLMTGVSSDLHGIASRLPPWEENDDNSEDEDEASFAENTTYIRNSIWVKIMTRPTGDGSAEPASRDQILRRERREGNHIRLALEETGSLQSRSSFVSVDASESSSLGRLSEPNASDTAASSTVPEPLMPTSTTSGRP------------------------------GDLEAARRLDWKLDAEELSLIRREEERVMKPLVLARLLAAGATLDC 1029
            +DK+ A++E +R+G +LKK +QVERRSGGLCNPDLLE +VRS+    S + +P+                +     + +A R    ++ V +    RGG       G       G  +   DVPWA+DMLC + R+RHAA+L++R RALAKGLAR++ GVS+DL G+ASRLPPWEE +D+ ED+     AE    IR+     I + PT +                                   S+  S D +E  SL   + P A+                                                     D   +RR DWKL A+ELSLI++EEERVMKP VL  LLA GA+L C
Sbjct:    1 MDKVVAAAEKERKGEMLKKFKQVERRSGGLCNPDLLENIVRSTGGEGSGESSPSAXXXXXXXXXXXXPPRSPDHKGQDAAIRALNSLVVVDVEKDERGGVAGVGGSGG------GVSSGAQDVPWAEDMLCRSVRKRHAAVLKTRGRALAKGLARMLKGVSNDLKGVASRLPPWEECEDDDEDKPXGGGAE-LERIRS--LGNIFSAPTHEXXXXXXXXXXXX-----------XXXXXXXXXSCVSAVTSEDGNERLSLSSDNAPTAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADCVNSRRQDWKLSAQELSLIKKEEERVMKPDVLTTLLAKGASLGC 347
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61975.13761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAT1_ECTSI1.050e-3937.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYX3_9PHAE1.120e-3434.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61975contigH-elongata_contig61975:677..2958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1044
Cds size1044
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61975.13761.1prot_H-elongata_contig61975.13761.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61975 677..2958 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931000.199996-CDS-H-elongata_contig61975:676..10011622931000.199996-CDS-H-elongata_contig61975:676..1001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61975 677..1001 -
1691679657.002466-CDS-H-elongata_contig61975:676..10011691679657.002466-CDS-H-elongata_contig61975:676..1001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61975 677..1001 -
1622931000.219344-CDS-H-elongata_contig61975:1532..16411622931000.219344-CDS-H-elongata_contig61975:1532..1641Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61975 1533..1641 -
1691679657.016681-CDS-H-elongata_contig61975:1532..16411691679657.016681-CDS-H-elongata_contig61975:1532..1641Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61975 1533..1641 -
1622931000.23135-CDS-H-elongata_contig61975:2348..29581622931000.23135-CDS-H-elongata_contig61975:2348..2958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61975 2349..2958 -
1691679657.0320392-CDS-H-elongata_contig61975:2348..29581691679657.0320392-CDS-H-elongata_contig61975:2348..2958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61975 2349..2958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61975.13761.1

>prot_H-elongata_contig61975.13761.1 ID=prot_H-elongata_contig61975.13761.1|Name=mRNA_H-elongata_contig61975.13761.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=348bp
QAISTLLKEELDKIKASSESDRQGALLKKLQQVERRSGGLCNPDLLEKVV
RSSSCDKAPTPVLSTTPVSPAEPSRSALSSASRTSASRGSGDMMEVGLRT
PVRGGAPMFFDIGSNDARSEGAGTAGDDVPWADDMLCGASRRRHAAMLRS
RARALAKGLARLMTGVSSDLHGIASRLPPWEENDDNSEDEDEASFAENTT
YIRNSIWVKIMTRPTGDGSAEPASRDQILRRERREGNHIRLALEETGSLQ
SRSSFVSVDASESSSLGRLSEPNASDTAASSTVPEPLMPTSTTSGRPGDL
EAARRLDWKLDAEELSLIRREEERVMKPLVLARLLAAGATLDCERRD*
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mRNA from alignment at H-elongata_contig61975:677..2958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61975.13761.1 ID=mRNA_H-elongata_contig61975.13761.1|Name=mRNA_H-elongata_contig61975.13761.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2282bp|location=Sequence derived from alignment at H-elongata_contig61975:677..2958- (Himanthalia elongata Himel1 dioecious)
CAGGCAATATCCACCTTGCTGAAAGAAGAACTTGACAAGATCAAGGCATC
GTCAGAAAGCGACCGCCAAGGTGCCCTCCTCAAGAAACTCCAACAGGTGG
AGCGGCGCAGCGGCGGCCTCTGCAACCCCGATCTCCTCGAAAAAGTCGTC
CGCTCCTCGTCCTGTGACAAGGCACCGACGCCGGTACTGTCGACAACACC
CGTGTCTCCCGCGGAGCCTTCCCGTTCGGCGCTTTCCAGCGCAAGCAGGA
CATCGGCTTCCAGAGGCAGCGGTGATATGATGGAGGTGGGACTTAGAACT
CCTGTCAGAGGGGGAGCTCCCATGTTCTTTGATATAGGAAGCAATGATGC
CCGAAGCGAGGGCGCGGGGACGGCTGGGGATGACGTCCCCTGGGCGGACG
ACATGCTCTGCGGTGCGAGCCGAAGGCGTCACGCAGCGATGCTGAGGAGT
CGCGCCCGGGCTCTCGCGAAGGGCTTGGCGAGATTAATGACAGGAGTTTC
GTCGGACCTGCATGGTATTGCCTCTCGGCTTCCTCCCTGGGAGGAAAACG
ACGACAATTCGGAGGACGAAGACGAGGCGAGTTTCGCTGAAAATACTACA
TATATACGAAGTATTCAATAAATTCATATACAGGTATATCTTTATTATGT
ATTATGTATTATATAGACTCTAAATATTTAATGGCAAAGGACGTCATATA
CTTCTTTTGGAGAGCAAAAATAAGTTCTTGCGAACGTCTATTTCTCTCTC
TCTAGAATCCTACTTCTCACTCAAGTGGCTGTGTTTATGTAGAGGTTTAT
GTAGAGCTTTATGTAGAGCTTGTATGATCGTGTGTGTAATCTTATGAACA
TTACCATCTGACGGGCTACGTTTCACACATCGACGAAGTCCATACTCATC
CATTAATAGCGTTTAATGCATCCATTTTTATCCGGTATATTTTTCTGGGG
ACGGGCGGGGTAGGGGGTGGATGAGAGATAAACCCGCTAAGGTGACGATT
AGACCGACTGAGGAGGTTATAGTGGTACTGGTACTGTGATGTCCTGCAGC
AGTTGGAATGTTACGATAGGGGCGACCCTACTTGCAGCAGAGTAAGCCAG
ATACCCCCATCGCCCCCCGCATTTATATCCTGCTGTCTGTAGTATTCATA
GTACAGTATCAGTACTAACATGCCAGATACATACAATGCCAACCTTAATA
CTGTACTACAGTATCTAATATGTTATTATTACTGTCTTGGTTTTTTTTTG
CGCACTCCGTTGATTCTACTTATATTGTCTATTATGGTCTGTATCCCCGA
TGTACGCACTAATAAAGATTCAATCTGGGTTAAGATAATGACCAGGCCGA
CGGGGGACGGGTCGGCCGAACCCGCCTCGCGAGACCAAATTCTCAGGCGC
GAACGTAGAGAAGGCAACCATATCCGGTTGATCCTTCCTATACTAAAGGT
TATATAATTTTTGATTACCACAGCTACACACCATCTATAGTAACTATATA
ATCTATAGTACCATAGTCTGTAGTCTAAATAATATGTACGAACTACGGTA
ATGGGTATTATTATCCAAGTATATCATCTTCGCTATTATTTACTTCGTAT
TATTTATTTATTTATTTTATGTTTTTTTCCCTGTTTCGCCAAATTATGAA
TTCGTAGCACCGCAATGCCGATTGGAAATAAGACAGGGGAAAATTATTTT
TCCTCTGGTCAGCTGACCACGAGCAGAAGGCAACCAAATCCGGTTGATCT
TCTGCTAAATGTGCGACCAACAACAACAACAACAATCAGCATTTATAGAA
TAACTAGAGAACACAAAAACAAAGCAGCCAAGAATAGTCACAACAAAATA
AGATATCGTTGTCCACCGAAAAATGACTATTTCCTCGGAATTTTTGTTTC
AATCGACGCCCACCTCCCCGACTCTTTCCGATGACGCCAGGACTCCTCCC
GTGGCAGACTCGCTCTGGAGGAAACCGGAAGCCTTCAGTCTCGGAGCAGC
TTCGTGTCCGTGGACGCCTCCGAATCTTCTTCGCTCGGGAGGCTCTCTGA
GCCGAATGCCTCCGATACTGCCGCATCCTCGACAGTCCCCGAACCCCTTA
TGCCTACGTCCACCACGAGCGGGAGACCTGGAGACCTGGAGGCTGCTCGG
CGGCTGGACTGGAAGCTCGACGCCGAGGAGCTGTCCCTCATCCGGCGGGA
GGAGGAGAGGGTCATGAAGCCTCTGGTTCTGGCGAGGCTGCTCGCCGCTG
GGGCGACGCTCGATTGTGAGCGACGTGATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig61975:677..2958-

>mRNA_H-elongata_contig61975.13761.1 ID=mRNA_H-elongata_contig61975.13761.1|Name=mRNA_H-elongata_contig61975.13761.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2088bp|location=Sequence derived from alignment at H-elongata_contig61975:677..2958- (Himanthalia elongata Himel1 dioecious)
CAGGCAATATCCACCTTGCTGAAAGAAGAACTTGACAAGATCAAGGCATC
GTCAGAAAGCGACCGCCAAGGTGCCCTCCTCAAGAAACTCCAACAGGTGG
AGCGGCGCAGCGGCGGCCTCTGCAACCCCGATCTCCTCGAAAAAGTCGTC
CGCTCCTCGTCCTGTGACAAGGCACCGACGCCGGTACTGTCGACAACACC
CGTGTCTCCCGCGGAGCCTTCCCGTTCGGCGCTTTCCAGCGCAAGCAGGA
CATCGGCTTCCAGAGGCAGCGGTGATATGATGGAGGTGGGACTTAGAACT
CCTGTCAGAGGGGGAGCTCCCATGTTCTTTGATATAGGAAGCAATGATGC
CCGAAGCGAGGGCGCGGGGACGGCTGGGGATGACGTCCCCTGGGCGGACG
ACATGCTCTGCGGTGCGAGCCGAAGGCGTCACGCAGCGATGCTGAGGAGT
CGCGCCCGGGCTCTCGCGAAGGGCTTGGCGAGATTAATGACAGGAGTTTC
GTCGGACCTGCATGGTATTGCCTCTCGGCTTCCTCCCTGGGAGGAAAACG
ACGACAATTCGGAGGACGAAGACGAGGCGAGTTTCGCTGAAAATACTACA
TATATACGAACAGGCAATATCCACCTTGCTGAAAGAAGAACTTGACAAGA
TCAAGGCATCGTCAGAAAGCGACCGCCAAGGTGCCCTCCTCAAGAAACTC
CAACAGGTGGAGCGGCGCAGCGGCGGCCTCTGCAACCCCGATCTCCTCGA
AAAAGTCGTCCGCTCCTCGTCCTGTGACAAGGCACCGACGCCGGTACTGT
CGACAACACCCGTGTCTCCCGCGGAGCCTTCCCGTTCGGCGCTTTCCAGC
GCAAGCAGGACATCGGCTTCCAGAGGCAGCGGTGATATGATGGAGGTGGG
ACTTAGAACTCCTGTCAGAGGGGGAGCTCCCATGTTCTTTGATATAGGAA
GCAATGATGCCCGAAGCGAGGGCGCGGGGACGGCTGGGGATGACGTCCCC
TGGGCGGACGACATGCTCTGCGGTGCGAGCCGAAGGCGTCACGCAGCGAT
GCTGAGGAGTCGCGCCCGGGCTCTCGCGAAGGGCTTGGCGAGATTAATGA
CAGGAGTTTCGTCGGACCTGCATGGTATTGCCTCTCGGCTTCCTCCCTGG
GAGGAAAACGACGACAATTCGGAGGACGAAGACGAGGCGAGTTTCGCTGA
AAATACTACATATATACGAAATTCAATCTGGGTTAAGATAATGACCAGGC
CGACGGGGGACGGGTCGGCCGAACCCGCCTCGCGAGACCAAATTCTCAGG
CGCGAACGTAGAGAAGGCAACCATATCCGATTCAATCTGGGTTAAGATAA
TGACCAGGCCGACGGGGGACGGGTCGGCCGAACCCGCCTCGCGAGACCAA
ATTCTCAGGCGCGAACGTAGAGAAGGCAACCATATCCGACTCGCTCTGGA
GGAAACCGGAAGCCTTCAGTCTCGGAGCAGCTTCGTGTCCGTGGACGCCT
CCGAATCTTCTTCGCTCGGGAGGCTCTCTGAGCCGAATGCCTCCGATACT
GCCGCATCCTCGACAGTCCCCGAACCCCTTATGCCTACGTCCACCACGAG
CGGGAGACCTGGAGACCTGGAGGCTGCTCGGCGGCTGGACTGGAAGCTCG
ACGCCGAGGAGCTGTCCCTCATCCGGCGGGAGGAGGAGAGGGTCATGAAG
CCTCTGGTTCTGGCGAGGCTGCTCGCCGCTGGGGCGACGCTCGATTGTGA
GCGACGTGATTGAACTCGCTCTGGAGGAAACCGGAAGCCTTCAGTCTCGG
AGCAGCTTCGTGTCCGTGGACGCCTCCGAATCTTCTTCGCTCGGGAGGCT
CTCTGAGCCGAATGCCTCCGATACTGCCGCATCCTCGACAGTCCCCGAAC
CCCTTATGCCTACGTCCACCACGAGCGGGAGACCTGGAGACCTGGAGGCT
GCTCGGCGGCTGGACTGGAAGCTCGACGCCGAGGAGCTGTCCCTCATCCG
GCGGGAGGAGGAGAGGGTCATGAAGCCTCTGGTTCTGGCGAGGCTGCTCG
CCGCTGGGGCGACGCTCGATTGTGAGCGACGTGATTGA
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