prot_H-elongata_contig61966.13760.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61966.13760.1
Unique Nameprot_H-elongata_contig61966.13760.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length302
Homology
[Close]
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: D8LGT1_ECTSI (RRM domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT1_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 9.670e-41
Identity = 72/90 (80.00%), Postives = 84/90 (93.33%), Query Frame = 0 
Query:  203 SPHIVFVGQLAFSTTAESLEDHFRTRGGVEGKISVRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGGGKVR 292
            +P IVFVGQLAFSTTAE +E+HFRTRGG+EG ISVRLLTRKG+NPP+S+GMAF++V+DA+ AY+CL LHHSRLDGRLLNVERTSGGGK R
Sbjct:  178 NPFIVFVGQLAFSTTAERVEEHFRTRGGIEGNISVRLLTRKGTNPPKSRGMAFLQVDDAESAYQCLSLHHSRLDGRLLNVERTSGGGKER 267
[Close]
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: A0A6H5KAW2_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW2_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 6.980e-40
Identity = 71/88 (80.68%), Postives = 83/88 (94.32%), Query Frame = 0 
Query:  203 SPHIVFVGQLAFSTTAESLEDHFRTRGGVEGKISVRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGGGK 290
            +P IVFVGQLAFSTTAE +E+HFRTRGG+EG ISVRLLTRKG+NPP+S+GMAF++V+DA+ AY+CL LHHSRLDGRLLNVERTSGGGK
Sbjct:  193 NPFIVFVGQLAFSTTAERVEEHFRTRGGIEGNISVRLLTRKGTNPPQSRGMAFLQVDDAESAYQCLSLHHSRLDGRLLNVERTSGGGK 280
[Close]
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: A0A836CEL8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEL8_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.880e-25
Identity = 54/88 (61.36%), Postives = 68/88 (77.27%), Query Frame = 0 
Query:  201 RGSPHIVFVGQLAFSTTAESLEDHFRTRGGVEGKISVRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGG 288
            + +P +VFVGQL+F TT   +E+HFR RGGVEG++ VRLLT   +   RS+GMAFVE E  +  Y+CL LHH+RLDGR+LNVERTSGG
Sbjct:  163 KAAPLVVFVGQLSFKTTEAEVEEHFRKRGGVEGELKVRLLTNPTNG--RSRGMAFVETESPETLYQCLTLHHTRLDGRILNVERTSGG 248
[Close]
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: W7TH40_9STRA (RNA binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH40_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.050e-22
Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = 0 
Query:  199 RIRGSPHIVFVGQLAFSTTAESLEDHFRTRGGVEGKISVRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGG 288
            RI  +PHIVFVGQL+F T+A  L +H    GGV G I VRLLT KGSN  +S+G AFV + DA+  Y+CL LHHS+L  R++NVER+ GG
Sbjct:  127 RIHENPHIVFVGQLSFDTSAHELREHLEN-GGVTGPIHVRLLTEKGSN--KSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGG 213
[Close]
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: A0A4D9D4A6_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4A6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.940e-22
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 0 
Query:  199 RIRGSPHIVFVGQLAFSTTAESLEDHFRTRGGVEGKISVRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGG 288
            RI  +PHIVFVGQL+F T+A  L +H   +GGV G I VRLLT KGSN  +S+G AFV + DA+  Y+CL LHHS+L  R++NVER+ GG
Sbjct:  129 RIHENPHIVFVGQLSFDTSAHELREHLE-KGGVTGPIHVRLLTEKGSN--KSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGG 215
[Close]
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: B7FSS2_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSS2_PHATC)

HSP 1 Score: 94.4 bits (233), Expect = 9.730e-19
Identity = 49/92 (53.26%), Postives = 63/92 (68.48%), Query Frame = 0 
Query:  204 PHIVFVGQLAFSTTAESLEDHFRTRGGVEGKIS-----VRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGGGK 290
            P+IVFVGQL++ TT +SL  H R   G E K++     +RLLT   +   +S+GMAFVEV D +M Y CL LHH+ L+GR LNVERT+GG K
Sbjct:  142 PYIVFVGQLSYDTTKDSLFQHIRKEIGTEHKVNPSTVKIRLLT--DAKTKKSRGMAFVEVPDPEMLYACLKLHHTFLEGRRLNVERTAGGRK 231
[Close]
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: A0A7S1TQR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQR3_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 9.760e-19
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 0 
Query:  196 DEGRIRGSPHIVFVGQLAFSTTAESLEDHFRTRGGVEGKISVRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGGG 289
            +E R R +P IVFVGQL++ TTAE L+ HF    GVEG I+VRL T   +   RS+GMAFVE++  +  + CL LHH+ LDGR +NVE+++G G
Sbjct:   11 EERRGRRNPCIVFVGQLSYRTTAEQLKKHFAA-AGVEGNIAVRLRTDPKTK--RSRGMAFVELDTPEALHECLKLHHTMLDGRNINVEKSAGRG 101
[Close]
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: A0A7S0GDR5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GDR5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.400e-17
Identity = 45/108 (41.67%), Postives = 70/108 (64.81%), Query Frame = 0 
Query:  197 EGRIRGSPHIVFVGQLAFSTTAESLEDHFRTR--------GGVEGK------ISVRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGGGK 290
            E + +  P+I+F+GQLA++TT + L +HF T+           +GK      + +RLLT K +   +SKGMAF+EV + ++ Y+CL LH + +DGR +NVER++GGGK
Sbjct:   47 EKKEKRDPYILFIGQLAYTTTKQMLFEHFETKINNDVDNIASSKGKPVTTESLQIRLLTDKKTK--KSKGMAFLEVSNPELMYQCLSLHRTAIDGRRINVERSAGGGK 152
[Close]
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: A0A7S3XJ31_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJ31_HETAK)

HSP 1 Score: 91.3 bits (225), Expect = 3.200e-17
Identity = 47/85 (55.29%), Postives = 59/85 (69.41%), Query Frame = 0 
Query:  204 PHIVFVGQLAFSTTAESLEDHFRTRGGVEGKISVRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGG 288
            P+IVFVGQL F TT++ +EDHFR    + G I VRLLT K +  P  KGMAFVEV +    Y+CL LHHS L+ R +NVE++ GG
Sbjct:   71 PNIVFVGQLDFKTTSKQIEDHFRAHD-IHGFIKVRLLTDKVTKKP--KGMAFVEVSNPTEMYKCLKLHHSSLNRRRINVEKSCGG 152
[Close]
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: A0A7S4JM15_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JM15_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.580e-16
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 0 
Query:  201 RGSPHIVFVGQLAFSTTAESLEDHFRTRGGVEGK------ISVRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGGGK 290
            + SP+++F+GQL++ TT E L  HF+   G + K      + +RLLT   S   RS+G+AFVE ED +  Y CL LHH+ LDGR +NVER++GG K
Sbjct:  230 KSSPYVLFIGQLSYHTTKEGLFRHFQRELGKDKKEITEETLRIRLLT--DSKTGRSRGLAFVETEDPETMYACLQLHHTTLDGRCINVERSAGGKK 323
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGT1_ECTSI9.670e-4180.00RRM domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A6H5KAW2_9PHAE6.980e-4080.68RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CEL8_9STRA3.880e-2561.36RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
W7TH40_9STRA1.050e-2257.78RNA binding protein n=1 Tax=Nannochloropsis gadita... [more]
A0A4D9D4A6_9STRA3.940e-2257.78RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
B7FSS2_PHATC9.730e-1953.26Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A7S1TQR3_9STRA9.760e-1952.13Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S0GDR5_9STRA1.400e-1741.67Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S3XJ31_HETAK3.200e-1755.29Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4JM15_9STRA1.580e-1646.88Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 206..283
e-value: 1.1E-11
score: 54.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 207..280
e-value: 1.1E-8
score: 34.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 205..287
score: 12.322
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 95..292
e-value: 5.2E-17
score: 64.2
NoneNo IPR availablePANTHERPTHR23236:SF51EUKARYOTIC INITIATION FACTOR 4Bcoord: 153..290
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 153..290
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 195..289

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61966contigH-elongata_contig61966:1173..3552 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61966.13760.1mRNA_H-elongata_contig61966.13760.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61966 1170..3552 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61966.13760.1 ID=prot_H-elongata_contig61966.13760.1|Name=mRNA_H-elongata_contig61966.13760.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=302bp
MNAKERRAARRKIERGSSALPIEDVNVKEQLVARRKTERDSTSRKSGIEA
SSGDDKYSPATAATTAGMNSKARRAEKRAAARASAEAEAATQGINTDTGI
SAEPMTAKERRKVRRASAREALLAASVSSSNTKSGGDKEGMTSKERRLLR
RQQERSKREREAEGEGGSGSPHLGSGPAKRRKDGGGGGGGGAGKGDEGRI
RGSPHIVFVGQLAFSTTAESLEDHFRTRGGVEGKISVRLLTRKGSNPPRS
KGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGGGKVRNCILRVYN
R*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf