mRNA_H-elongata_contig61966.13760.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: D8LGT1_ECTSI (RRM domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT1_ECTSI) HSP 1 Score: 157 bits (397), Expect = 9.950e-41 Identity = 72/90 (80.00%), Postives = 84/90 (93.33%), Query Frame = 1
Query: 610 SPHIVFVGQLAFSTTAESLEDHFRTRGGVEGKISVRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGGGKVR 879
+P IVFVGQLAFSTTAE +E+HFRTRGG+EG ISVRLLTRKG+NPP+S+GMAF++V+DA+ AY+CL LHHSRLDGRLLNVERTSGGGK R
Sbjct: 178 NPFIVFVGQLAFSTTAERVEEHFRTRGGIEGNISVRLLTRKGTNPPKSRGMAFLQVDDAESAYQCLSLHHSRLDGRLLNVERTSGGGKER 267
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: A0A6H5KAW2_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW2_9PHAE) HSP 1 Score: 155 bits (393), Expect = 7.180e-40 Identity = 71/88 (80.68%), Postives = 83/88 (94.32%), Query Frame = 1
Query: 610 SPHIVFVGQLAFSTTAESLEDHFRTRGGVEGKISVRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGGGK 873
+P IVFVGQLAFSTTAE +E+HFRTRGG+EG ISVRLLTRKG+NPP+S+GMAF++V+DA+ AY+CL LHHSRLDGRLLNVERTSGGGK
Sbjct: 193 NPFIVFVGQLAFSTTAERVEEHFRTRGGIEGNISVRLLTRKGTNPPQSRGMAFLQVDDAESAYQCLSLHHSRLDGRLLNVERTSGGGK 280
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: A0A836CEL8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEL8_9STRA) HSP 1 Score: 115 bits (288), Expect = 3.980e-25 Identity = 54/88 (61.36%), Postives = 68/88 (77.27%), Query Frame = 1
Query: 604 RGSPHIVFVGQLAFSTTAESLEDHFRTRGGVEGKISVRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGG 867
+ +P +VFVGQL+F TT +E+HFR RGGVEG++ VRLLT + RS+GMAFVE E + Y+CL LHH+RLDGR+LNVERTSGG
Sbjct: 163 KAAPLVVFVGQLSFKTTEAEVEEHFRKRGGVEGELKVRLLTNPTNG--RSRGMAFVETESPETLYQCLTLHHTRLDGRILNVERTSGG 248
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: W7TH40_9STRA (RNA binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH40_9STRA) HSP 1 Score: 105 bits (261), Expect = 1.070e-22 Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = 1
Query: 598 RIRGSPHIVFVGQLAFSTTAESLEDHFRTRGGVEGKISVRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGG 867
RI +PHIVFVGQL+F T+A L +H GGV G I VRLLT KGSN +S+G AFV + DA+ Y+CL LHHS+L R++NVER+ GG
Sbjct: 127 RIHENPHIVFVGQLSFDTSAHELREHLEN-GGVTGPIHVRLLTEKGSN--KSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGG 213
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: A0A4D9D4A6_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4A6_9STRA) HSP 1 Score: 105 bits (263), Expect = 4.030e-22 Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 1
Query: 598 RIRGSPHIVFVGQLAFSTTAESLEDHFRTRGGVEGKISVRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGG 867
RI +PHIVFVGQL+F T+A L +H +GGV G I VRLLT KGSN +S+G AFV + DA+ Y+CL LHHS+L R++NVER+ GG
Sbjct: 129 RIHENPHIVFVGQLSFDTSAHELREHLE-KGGVTGPIHVRLLTEKGSN--KSRGQAFVTLIDAENQYKCLSLHHSKLKNRVINVERSCGG 215
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: B7FSS2_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSS2_PHATC) HSP 1 Score: 94.4 bits (233), Expect = 9.920e-19 Identity = 49/92 (53.26%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 613 PHIVFVGQLAFSTTAESLEDHFRTRGGVEGKIS-----VRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGGGK 873
P+IVFVGQL++ TT +SL H R G E K++ +RLLT + +S+GMAFVEV D +M Y CL LHH+ L+GR LNVERT+GG K
Sbjct: 142 PYIVFVGQLSYDTTKDSLFQHIRKEIGTEHKVNPSTVKIRLLT--DAKTKKSRGMAFVEVPDPEMLYACLKLHHTFLEGRRLNVERTAGGRK 231
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: A0A7S1TQR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQR3_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 9.940e-19 Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 1
Query: 589 DEGRIRGSPHIVFVGQLAFSTTAESLEDHFRTRGGVEGKISVRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGGG 870
+E R R +P IVFVGQL++ TTAE L+ HF GVEG I+VRL T + RS+GMAFVE++ + + CL LHH+ LDGR +NVE+++G G
Sbjct: 11 EERRGRRNPCIVFVGQLSYRTTAEQLKKHFAA-AGVEGNIAVRLRTDPKTK--RSRGMAFVELDTPEALHECLKLHHTMLDGRNINVEKSAGRG 101
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: A0A7S0GDR5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GDR5_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.420e-17 Identity = 45/108 (41.67%), Postives = 70/108 (64.81%), Query Frame = 1
Query: 592 EGRIRGSPHIVFVGQLAFSTTAESLEDHFRTR--------GGVEGK------ISVRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGGGK 873
E + + P+I+F+GQLA++TT + L +HF T+ +GK + +RLLT K + +SKGMAF+EV + ++ Y+CL LH + +DGR +NVER++GGGK
Sbjct: 47 EKKEKRDPYILFIGQLAYTTTKQMLFEHFETKINNDVDNIASSKGKPVTTESLQIRLLTDKKTK--KSKGMAFLEVSNPELMYQCLSLHRTAIDGRRINVERSAGGGK 152
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: A0A7S3XJ31_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJ31_HETAK) HSP 1 Score: 91.3 bits (225), Expect = 3.260e-17 Identity = 47/85 (55.29%), Postives = 59/85 (69.41%), Query Frame = 1
Query: 613 PHIVFVGQLAFSTTAESLEDHFRTRGGVEGKISVRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGG 867
P+IVFVGQL F TT++ +EDHFR + G I VRLLT K + P KGMAFVEV + Y+CL LHHS L+ R +NVE++ GG
Sbjct: 71 PNIVFVGQLDFKTTSKQIEDHFRAHD-IHGFIKVRLLTDKVTKKP--KGMAFVEVSNPTEMYKCLKLHHSSLNRRRINVEKSCGG 152
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Match: A0A7S4JM15_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JM15_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.610e-16 Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 1
Query: 604 RGSPHIVFVGQLAFSTTAESLEDHFRTRGGVEGK------ISVRLLTRKGSNPPRSKGMAFVEVEDADMAYRCLGLHHSRLDGRLLNVERTSGGGK 873
+ SP+++F+GQL++ TT E L HF+ G + K + +RLLT S RS+G+AFVE ED + Y CL LHH+ LDGR +NVER++GG K
Sbjct: 230 KSSPYVLFIGQLSYHTTKEGLFRHFQRELGKDKKEITEETLRIRLLT--DSKTGRSRGLAFVETEDPETMYACLQLHHTTLDGRCINVERSAGGKK 323 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61966.13760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig61966.13760.1 >prot_H-elongata_contig61966.13760.1 ID=prot_H-elongata_contig61966.13760.1|Name=mRNA_H-elongata_contig61966.13760.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=302bp MNAKERRAARRKIERGSSALPIEDVNVKEQLVARRKTERDSTSRKSGIEAback to top mRNA from alignment at H-elongata_contig61966:1170..3552+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig61966.13760.1 ID=mRNA_H-elongata_contig61966.13760.1|Name=mRNA_H-elongata_contig61966.13760.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2383bp|location=Sequence derived from alignment at H-elongata_contig61966:1170..3552+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig61966:1170..3552+ >mRNA_H-elongata_contig61966.13760.1 ID=mRNA_H-elongata_contig61966.13760.1|Name=mRNA_H-elongata_contig61966.13760.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1812bp|location=Sequence derived from alignment at H-elongata_contig61966:1170..3552+ (Himanthalia elongata Himel1 dioecious)back to top |