mRNA_H-elongata_contig61934.13757.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61934.13757.1
Unique NamemRNA_H-elongata_contig61934.13757.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61934.13757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61934contigH-elongata_contig61934:1445..1988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size545
Cds size408
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930999.7792072-UTR-H-elongata_contig61934:1444..15801622930999.7792072-UTR-H-elongata_contig61934:1444..1580Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61934 1445..1580 +
1691679656.8667376-UTR-H-elongata_contig61934:1444..15801691679656.8667376-UTR-H-elongata_contig61934:1444..1580Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61934 1445..1580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930999.7994232-CDS-H-elongata_contig61934:1580..19881622930999.7994232-CDS-H-elongata_contig61934:1580..1988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61934 1581..1988 +
1691679656.882956-CDS-H-elongata_contig61934:1580..19881691679656.882956-CDS-H-elongata_contig61934:1580..1988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61934 1581..1988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61934.13757.1prot_H-elongata_contig61934.13757.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61934 1581..1988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61934.13757.1

>prot_H-elongata_contig61934.13757.1 ID=prot_H-elongata_contig61934.13757.1|Name=mRNA_H-elongata_contig61934.13757.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MRPIVRSHRSAGSALSVGLAAIFITPGHDAFVSAWVSPMAALAGFRSTGR
GLIRPRDGISLPSDSTYICRKCQKLTMESSLEDWADEDERCTAAEQCRLH
SQQSILGRHACALEGLRRAGVGVLAGLFVMAGGGVG
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mRNA from alignment at H-elongata_contig61934:1445..1988+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61934.13757.1 ID=mRNA_H-elongata_contig61934.13757.1|Name=mRNA_H-elongata_contig61934.13757.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=544bp|location=Sequence derived from alignment at H-elongata_contig61934:1445..1988+ (Himanthalia elongata Himel1 dioecious)
GTTTGATGACACATCCCGACGTTCTCTCTGCGCTTTGCCCACTTTGAGCG
CTGAGCGCACATCGTGCGGATCAGCGCCTCTTCATTAATACAGAGGCTGA
AAGTCTTAGCCCAATATTTGAACCCAAGACTCCACAATGCGTCCGATCGT
TCGATCACATCGATCAGCTGGGTCCGCTCTTTCTGTTGGCCTTGCGGCGA
TTTTTATCACTCCAGGGCATGACGCTTTTGTCTCCGCTTGGGTTTCACCC
ATGGCGGCCCTAGCAGGCTTCCGTAGTACCGGTAGAGGCCTGATTCGTCC
CAGGGATGGTATTTCGTTGCCCTCAGATAGCACATACATTTGCCGAAAAT
GTCAAAAGTTGACCATGGAGTCCAGCTTGGAGGATTGGGCGGATGAGGAT
GAGAGGTGTACCGCTGCTGAGCAGTGCCGATTGCATTCACAACAATCTAT
TTTGGGTCGACATGCTTGCGCCCTGGAAGGGCTGAGAAGGGCGGGCGTCG
GCGTGCTAGCGGGTTTATTTGTGATGGCTGGAGGTGGCGTGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig61934:1445..1988+

>mRNA_H-elongata_contig61934.13757.1 ID=mRNA_H-elongata_contig61934.13757.1|Name=mRNA_H-elongata_contig61934.13757.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig61934:1445..1988+ (Himanthalia elongata Himel1 dioecious)
ATGCGTCCGATCGTTCGATCACATCGATCAGCTGGGTCCGCTCTTTCTGT
TGGCCTTGCGGCGATTTTTATCACTCCAGGGCATGACGCTTTTGTCTCCG
CTTGGGTTTCACCCATGGCGGCCCTAGCAGGCTTCCGTAGTACCGGTAGA
GGCCTGATTCGTCCCAGGGATGGTATTTCGTTGCCCTCAGATAGCACATA
CATTTGCCGAAAATGTCAAAAGTTGACCATGGAGTCCAGCTTGGAGGATT
GGGCGGATGAGGATGAGAGGTGTACCGCTGCTGAGCAGTGCCGATTGCAT
TCACAACAATCTATTTTGGGTCGACATGCTTGCGCCCTGGAAGGGCTGAG
AAGGGCGGGCGTCGGCGTGCTAGCGGGTTTATTTGTGATGGCTGGAGGTG
GCGTGGGGATGCGTCCGATCGTTCGATCACATCGATCAGCTGGGTCCGCT
CTTTCTGTTGGCCTTGCGGCGATTTTTATCACTCCAGGGCATGACGCTTT
TGTCTCCGCTTGGGTTTCACCCATGGCGGCCCTAGCAGGCTTCCGTAGTA
CCGGTAGAGGCCTGATTCGTCCCAGGGATGGTATTTCGTTGCCCTCAGAT
AGCACATACATTTGCCGAAAATGTCAAAAGTTGACCATGGAGTCCAGCTT
GGAGGATTGGGCGGATGAGGATGAGAGGTGTACCGCTGCTGAGCAGTGCC
GATTGCATTCACAACAATCTATTTTGGGTCGACATGCTTGCGCCCTGGAA
GGGCTGAGAAGGGCGGGCGTCGGCGTGCTAGCGGGTTTATTTGTGATGGC
TGGAGGTGGCGTGGGG
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