prot_H-elongata_contig61906.13754.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61906.13754.1
Unique Nameprot_H-elongata_contig61906.13754.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length67
Homology
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: D8LPY7_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY7_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 5.130e-33
Identity = 58/66 (87.88%), Postives = 62/66 (93.94%), Query Frame = 0
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASGTFRQLVK 66
            GPSGKTFNFTFH+RGTDEQ+DELGRLM N CKLVPGGVVCF+ASYGYLDQV+QRWKASGT RQL K
Sbjct:  829 GPSGKTFNFTFHRRGTDEQLDELGRLMTNVCKLVPGGVVCFLASYGYLDQVLQRWKASGTLRQLSK 894          
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: A0A835YWY4_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWY4_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.140e-21
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 0
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASGTFRQLVK 66
            GPSG  FNFTF +RG+ EQ+DEL RL+ N C LVPGGVVCF+ S+GY++QV+Q WKASG   QL K
Sbjct:  770 GPSGGVFNFTFAKRGSPEQMDELCRLLSNVCALVPGGVVCFLPSFGYMEQVLQCWKASGALHQLSK 835          
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: A0A7S0SVU7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SVU7_9CHLO)

HSP 1 Score: 81.3 bits (199), Expect = 8.250e-18
Identity = 37/66 (56.06%), Postives = 45/66 (68.18%), Query Frame = 0
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASGTFRQLVK 66
            GPSG+TF+F+F  R   E +DELGRL+VNAC +VPGGVV F  S+ Y D V  RW  +G   QL K
Sbjct:    3 GPSGRTFDFSFSARAAPEMIDELGRLLVNACAVVPGGVVVFFPSFKYADDVYARWVKTGAMGQLSK 68          
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: A0A2P6TCU8_CHLSO (Putative ATP-dependent RNA helicase DDX11 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TCU8_CHLSO)

HSP 1 Score: 78.2 bits (191), Expect = 2.640e-15
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 0
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASGTFRQLV 65
            GPSG   +F    RG+   +DELGRL++NAC++VPGGVV F  S+ Y DQV  RW+ASG  RQL 
Sbjct:  748 GPSGAALDFRHAARGSAATMDELGRLVLNACQVVPGGVVVFFPSFSYADQVYARWQASGLLRQLA 812          
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: A0A401QC09_SCYTO (HELICc2 domain-containing protein n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401QC09_SCYTO)

HSP 1 Score: 72.8 bits (177), Expect = 2.820e-15
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 0
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASGTFRQL 64
            GPSG+   FT+ +R   + +DE GR++VN C +VPGG+VCF  SY Y  QV  RW+ +G   QL
Sbjct:   23 GPSGQQLEFTYQKRDKPQLLDECGRVLVNLCNVVPGGIVCFFPSYDYEKQVYTRWEKTGLLAQL 86          
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: A0A433QTR2_9FUNG (ATP-dependent DNA helicase CHL1 n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QTR2_9FUNG)

HSP 1 Score: 75.9 bits (185), Expect = 1.710e-14
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 0
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASG 59
            GPS     FTF +R   + +DELG+++VN C L+P GVVCF ASY YL+QV +RW+ SG
Sbjct:  643 GPSSMPLEFTFEKRSDAKLIDELGQIVVNLCNLIPDGVVCFFASYAYLEQVTRRWEGSG 701          
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: A0A433DGD7_9FUNG (ATP-dependent DNA helicase CHL1 n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DGD7_9FUNG)

HSP 1 Score: 75.9 bits (185), Expect = 1.710e-14
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 0
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASG 59
            GPS     FTF +R   + +DELG+++VN C L+P GVVCF ASY YL+QV +RW+ SG
Sbjct:  699 GPSSMPLEFTFEKRSDAKLIDELGQIVVNLCNLIPDGVVCFFASYAYLEQVTRRWEGSG 757          
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: A0A7S2AUN2_9CHLO (Hypothetical protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2AUN2_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 4.040e-14
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 0
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASGTFRQL 64
            GPSG   N    +R TD+Q DELGR++ NA ++VPGGVVCFV S+ ++ +++ RW+++G F QL
Sbjct:  110 GPSGLPLNLEASKRATDDQRDELGRVLRNAVRIVPGGVVCFVPSHRFVGELMSRWRSTGLFAQL 173          
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: A0A7S2RUD0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUD0_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.280e-14
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 0
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASGTFRQL 64
            GP+   F+F F  R T EQ+DELGRL+VN C + P GVVCF+ SY Y  + +  W   GT R+L
Sbjct:  284 GPTNVRFDFRFQSRATPEQLDELGRLLVNVCTVTPAGVVCFLPSYDYERKAVDHWTLQGTLRRL 347          
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Match: E1ZP80_CHLVA (Helicase ATP-binding domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZP80_CHLVA)

HSP 1 Score: 73.9 bits (180), Expect = 8.140e-14
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    1 GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQVIQRWKASGTFRQLV 65
            GPSG   +F    RG    +DELGRL++NAC++VPGGVV F  S+ Y DQV  RW+ SG  RQL 
Sbjct:  719 GPSGAPLDFRNASRGAAATLDELGRLVLNACQVVPGGVVLFFPSFSYADQVHARWQHSGLLRQLA 783          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61906.13754.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPY7_ECTSI5.130e-3387.88Helicase ATP-binding domain-containing protein n=1... [more]
A0A835YWY4_9STRA2.140e-2165.15Helicase C-terminal domain-containing protein n=1 ... [more]
A0A7S0SVU7_9CHLO8.250e-1856.06Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A2P6TCU8_CHLSO2.640e-1555.38Putative ATP-dependent RNA helicase DDX11 n=1 Tax=... [more]
A0A401QC09_SCYTO2.820e-1548.44HELICc2 domain-containing protein n=1 Tax=Scyliorh... [more]
A0A433QTR2_9FUNG1.710e-1454.24ATP-dependent DNA helicase CHL1 n=1 Tax=Jimgerdema... [more]
A0A433DGD7_9FUNG1.710e-1454.24ATP-dependent DNA helicase CHL1 n=1 Tax=Jimgerdema... [more]
A0A7S2AUN2_9CHLO4.040e-1450.00Hypothetical protein n=1 Tax=Pycnococcus provasoli... [more]
A0A7S2RUD0_9STRA4.280e-1450.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
E1ZP80_CHLVA8.140e-1453.85Helicase ATP-binding domain-containing protein n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 5..66
e-value: 5.4E-6
score: 27.8
NoneNo IPR availablePANTHERPTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERcoord: 1..64
NoneNo IPR availableTMHMMTMhelixcoord: 26..48
IPR006555ATP-dependent helicase, C-terminalPFAMPF13307Helicase_C_2coord: 28..60
e-value: 8.4E-6
score: 26.1
IPR028331ATP-dependent RNA helicase CHL1/DDX11PANTHERPTHR11472:SF41ATP-DEPENDENT DNA HELICASE DDX11-RELATEDcoord: 1..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61906contigH-elongata_contig61906:650..1252 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61906.13754.1mRNA_H-elongata_contig61906.13754.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61906 650..1252 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61906.13754.1 ID=prot_H-elongata_contig61906.13754.1|Name=mRNA_H-elongata_contig61906.13754.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
GPSGKTFNFTFHQRGTDEQVDELGRLMVNACKLVPGGVVCFVASYGYLDQ
VIQRWKASGTFRQLVK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006555ATP-dep_Helicase_C
IPR028331CHL1/DDX11