mRNA_H-elongata_contig61827.13743.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61827.13743.1
Unique NamemRNA_H-elongata_contig61827.13743.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61827.13743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61827contigH-elongata_contig61827:137..3122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2986
Cds size1986
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61827.13743.1prot_H-elongata_contig61827.13743.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61827 254..2239 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930997.5812674-UTR-H-elongata_contig61827:136..2531622930997.5812674-UTR-H-elongata_contig61827:136..253Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61827 137..253 +
1691679655.8011217-UTR-H-elongata_contig61827:136..2531691679655.8011217-UTR-H-elongata_contig61827:136..253Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61827 137..253 +
1622930997.6118343-UTR-H-elongata_contig61827:2239..31221622930997.6118343-UTR-H-elongata_contig61827:2239..3122Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61827 2240..3122 +
1691679655.82293-UTR-H-elongata_contig61827:2239..31221691679655.82293-UTR-H-elongata_contig61827:2239..3122Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61827 2240..3122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930997.595799-CDS-H-elongata_contig61827:253..22391622930997.595799-CDS-H-elongata_contig61827:253..2239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61827 254..2239 +
1691679655.812854-CDS-H-elongata_contig61827:253..22391691679655.812854-CDS-H-elongata_contig61827:253..2239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61827 254..2239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61827.13743.1

>prot_H-elongata_contig61827.13743.1 ID=prot_H-elongata_contig61827.13743.1|Name=mRNA_H-elongata_contig61827.13743.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=662bp
MVKLLNMTRPKDGCSKQPTSGVTGRTNRDHCAMHTLEGVANVKIQMCTSD
SCSKVPIEVKAGSTKREYCAENALEGMVNVSNKICASDWCSKLASYGAAG
SKNREYCPEHLLEGMVIISNNKCASDGCSKRSYYGKAGSTKREYCAEHTL
EGMVNLSKKRCAGDGCFKISSYGRAGTRNREYCAKHALEGMVNLLNKRCA
GDGCYKLASCGKAGSTKREYCAEHTLEGMVNISNKRCARDGCLKISSYGR
AGTRNREYCAKHAFEGMVNLSKKRCAVDGCYKLASCGKAGSMKREYCIEH
ALKGMVNVLNKMCASEGCFKTSYYGKAGSTNREFCAKHALEGMVSLSNTR
CVGYGCDKLASYGKAGSTKREYCAEHALEGMVNLSNKRCAGYGCDKLASY
GRAGSTNREYCAKHALEGMVNLSNKRCAGDGCSKRSYYGKAGSKKREYCT
EHSLKGMVNLSRERCAGNGCPKLASYGNAGSTKREFCAKHALEGMVNLSK
KRFAGDGCSKLASYGKTGSKKREYCTEHASDEMCLGEGCSKLPTYGKAGS
KKREYSAEHVFEETVNVSKKMCSGDRCSNISPCEGPGSVKRDYCAKHALE
DMVCIVPHIIPSSRKRVSKISSSPVSVSKMWITDNKVRVPFSETASAPVF
VKSEISVTKSK*
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mRNA from alignment at H-elongata_contig61827:137..3122+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61827.13743.1 ID=mRNA_H-elongata_contig61827.13743.1|Name=mRNA_H-elongata_contig61827.13743.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2986bp|location=Sequence derived from alignment at H-elongata_contig61827:137..3122+ (Himanthalia elongata Himel1 dioecious)
TAGGTCCGTCGACTTTTATCAGAAGATGCACGGGCGGTGGATGCTGTAAG
GTATCCAGCTGCTCAATAACTAGCTGCGAAAAGTGCAAGTGCCGCGCCGA
GTATTTCGTGGAGGGAAATGGTCAAGTTGTTAAATATGACGCGTCCGAAA
GATGGATGCTCTAAGCAACCGACGTCCGGGGTGACCGGCCGCACGAACCG
GGATCACTGCGCCATGCATACGCTAGAGGGCGTGGCGAATGTTAAGATAC
AAATGTGTACCAGCGATAGCTGCTCTAAGGTACCAATCGAGGTTAAGGCT
GGCAGCACAAAACGGGAGTACTGCGCTGAGAATGCCTTGGAGGGGATGGT
CAATGTTTCGAACAAAATATGTGCTAGTGATTGGTGTTCTAAGCTAGCGA
GCTACGGAGCAGCTGGAAGCAAGAATCGAGAGTACTGCCCCGAGCACTTA
TTGGAGGGGATGGTCATTATTTCGAACAATAAGTGTGCCAGTGATGGATG
TTCTAAACGATCGTACTACGGAAAGGCTGGAAGCACGAAGCGAGAGTACT
GCGCTGAGCACACTCTGGAGGGAATGGTCAATCTTTCGAAGAAAAGGTGT
GCTGGTGATGGGTGTTTTAAGATTTCAAGCTACGGAAGGGCTGGAACCAG
GAATCGAGAGTACTGCGCTAAGCATGCCTTGGAGGGGATGGTCAATCTTT
TGAACAAAAGATGTGCTGGTGATGGATGTTATAAGCTAGCGAGCTGCGGA
AAGGCCGGAAGCACGAAGCGAGAGTACTGCGCTGAGCACACTCTGGAGGG
AATGGTCAATATTTCGAACAAAAGGTGTGCCCGTGATGGGTGCTTGAAGA
TTTCAAGCTACGGAAGGGCCGGAACCAGAAATCGGGAGTACTGCGCTAAG
CATGCCTTCGAGGGGATGGTCAATCTTTCGAAAAAAAGATGTGCTGTTGA
TGGATGTTATAAGCTAGCGAGCTGCGGAAAGGCTGGAAGCATGAAACGAG
AGTACTGCATTGAGCATGCCTTGAAGGGAATGGTTAATGTTTTGAACAAA
ATGTGTGCCAGTGAGGGGTGTTTTAAGACTTCGTACTACGGAAAGGCCGG
AAGCACGAATCGAGAGTTCTGCGCTAAGCATGCCTTGGAGGGGATGGTCA
GTCTTTCGAACACAAGGTGTGTTGGTTATGGGTGTGATAAGCTAGCGAGC
TACGGGAAGGCCGGAAGCACGAAGCGAGAATACTGCGCTGAGCACGCCTT
GGAGGGAATGGTCAATCTTTCGAACAAAAGGTGTGCTGGTTATGGGTGTG
ATAAGCTAGCGAGTTATGGAAGGGCCGGAAGCACGAATCGAGAGTACTGC
GCTAAGCATGCCTTGGAGGGGATGGTCAATCTTTCGAACAAAAGATGTGC
TGGTGATGGATGTTCTAAACGATCGTACTACGGAAAGGCCGGAAGCAAGA
AACGAGAGTACTGCACTGAGCACTCACTGAAGGGCATGGTCAATCTTTCG
AGGGAAAGGTGTGCCGGTAATGGATGTCCTAAACTAGCGAGTTATGGGAA
TGCCGGAAGCACGAAGCGAGAGTTCTGCGCTAAGCATGCCTTGGAGGGGA
TGGTCAATCTTTCGAAAAAAAGGTTTGCTGGTGATGGATGTTCTAAGCTA
GCGAGCTACGGGAAGACTGGAAGCAAGAAACGAGAGTACTGCACTGAGCA
TGCCTCGGACGAAATGTGTTTAGGCGAGGGTTGCTCTAAGTTACCAACCT
ACGGTAAGGCTGGAAGCAAGAAACGGGAGTATTCCGCCGAGCATGTATTC
GAGGAGACGGTTAATGTTTCGAAGAAAATGTGTTCGGGGGATAGATGCTC
TAACATATCTCCCTGCGAAGGGCCCGGCAGCGTGAAGCGGGATTACTGCG
CAAAACATGCTTTGGAGGACATGGTGTGTATCGTCCCACACATCATTCCA
AGTTCCAGGAAGCGGGTGTCGAAGATCTCTTCATCGCCAGTATCCGTTTC
GAAGATGTGGATAACCGACAATAAGGTTAGAGTCCCCTTTTCCGAGACTG
CATCAGCTCCTGTTTTTGTGAAGTCAGAGATATCAGTAACTAAATCCAAG
TAGATATTGTTTTGGAAATGATTTTAAAGGAGAGTCTCTTTGTCAACGGG
AGCGATGACATTGCGCTCCATGGGTTATATGTCTAAAATACCCTTTCTTG
AGCATGCTCAGCTGACAACAAGCAGGAGGCAACCAAATCGGGTTGATTCT
TACTCTGCATTGATTTAGATGTCATATAATTGCAACAAGTAGCCTACGTA
AAACTAGTAACTTGGTTAATAATTCTAAAAGAGATAGCATAACCCCAACA
TTGAGGGGCCGGACGCGTTCGATATAACTCACAATGCACGTGGTCCGCTT
GACGGTACATCTCATGGAGTCAGAGATATCAGCAACTCTGTAAGTAGGTA
TTGTTTTGGAAAGGATTTAAGAGGGGACTCTCTTCGCCAACGGGAGCGAT
AACATTGCGCCCCATGGGTTATATGTTTAACATACTTTTTCATAAGCATG
CTCAGCTGACCACAAGCAGGAGGCAACCAAATCGGGTTGATTCCTACTCT
GCGTTGATTTAAATGTCAGATCATTGCAACAAGTAGCGTACGTAAAAGTA
GTAACTTAGCTAATTCAAAGAGACATGACATGACCCCAACATTGAGGGGC
CGGACGCGTTCGATCCCCTTGACGGCACATCTCATGCTCCTAAGAATGTG
TGTATGATCAAAGAGTTTGAAAAAGTTCACATGGCCACAATGAGCCGGGG
GAGCTTCATCACTGAGATATGCCCATAACCTCACCGCCCAATGAGCCTCA
TTATCGTGCTCCAGTAGGTTATACATCTCTTGATATGTACATAATATAGT
AGAATATGGATCAGCCGAATATAAGTGGTTTCCATACTGGTCGTGGTCAG
TTGAGGAGGAATAACATTTTTCCATGGCCCCTCTGG
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Coding sequence (CDS) from alignment at H-elongata_contig61827:137..3122+

>mRNA_H-elongata_contig61827.13743.1 ID=mRNA_H-elongata_contig61827.13743.1|Name=mRNA_H-elongata_contig61827.13743.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3972bp|location=Sequence derived from alignment at H-elongata_contig61827:137..3122+ (Himanthalia elongata Himel1 dioecious)
ATGGTCAAGTTGTTAAATATGACGCGTCCGAAAGATGGATGCTCTAAGCA
ACCGACGTCCGGGGTGACCGGCCGCACGAACCGGGATCACTGCGCCATGC
ATACGCTAGAGGGCGTGGCGAATGTTAAGATACAAATGTGTACCAGCGAT
AGCTGCTCTAAGGTACCAATCGAGGTTAAGGCTGGCAGCACAAAACGGGA
GTACTGCGCTGAGAATGCCTTGGAGGGGATGGTCAATGTTTCGAACAAAA
TATGTGCTAGTGATTGGTGTTCTAAGCTAGCGAGCTACGGAGCAGCTGGA
AGCAAGAATCGAGAGTACTGCCCCGAGCACTTATTGGAGGGGATGGTCAT
TATTTCGAACAATAAGTGTGCCAGTGATGGATGTTCTAAACGATCGTACT
ACGGAAAGGCTGGAAGCACGAAGCGAGAGTACTGCGCTGAGCACACTCTG
GAGGGAATGGTCAATCTTTCGAAGAAAAGGTGTGCTGGTGATGGGTGTTT
TAAGATTTCAAGCTACGGAAGGGCTGGAACCAGGAATCGAGAGTACTGCG
CTAAGCATGCCTTGGAGGGGATGGTCAATCTTTTGAACAAAAGATGTGCT
GGTGATGGATGTTATAAGCTAGCGAGCTGCGGAAAGGCCGGAAGCACGAA
GCGAGAGTACTGCGCTGAGCACACTCTGGAGGGAATGGTCAATATTTCGA
ACAAAAGGTGTGCCCGTGATGGGTGCTTGAAGATTTCAAGCTACGGAAGG
GCCGGAACCAGAAATCGGGAGTACTGCGCTAAGCATGCCTTCGAGGGGAT
GGTCAATCTTTCGAAAAAAAGATGTGCTGTTGATGGATGTTATAAGCTAG
CGAGCTGCGGAAAGGCTGGAAGCATGAAACGAGAGTACTGCATTGAGCAT
GCCTTGAAGGGAATGGTTAATGTTTTGAACAAAATGTGTGCCAGTGAGGG
GTGTTTTAAGACTTCGTACTACGGAAAGGCCGGAAGCACGAATCGAGAGT
TCTGCGCTAAGCATGCCTTGGAGGGGATGGTCAGTCTTTCGAACACAAGG
TGTGTTGGTTATGGGTGTGATAAGCTAGCGAGCTACGGGAAGGCCGGAAG
CACGAAGCGAGAATACTGCGCTGAGCACGCCTTGGAGGGAATGGTCAATC
TTTCGAACAAAAGGTGTGCTGGTTATGGGTGTGATAAGCTAGCGAGTTAT
GGAAGGGCCGGAAGCACGAATCGAGAGTACTGCGCTAAGCATGCCTTGGA
GGGGATGGTCAATCTTTCGAACAAAAGATGTGCTGGTGATGGATGTTCTA
AACGATCGTACTACGGAAAGGCCGGAAGCAAGAAACGAGAGTACTGCACT
GAGCACTCACTGAAGGGCATGGTCAATCTTTCGAGGGAAAGGTGTGCCGG
TAATGGATGTCCTAAACTAGCGAGTTATGGGAATGCCGGAAGCACGAAGC
GAGAGTTCTGCGCTAAGCATGCCTTGGAGGGGATGGTCAATCTTTCGAAA
AAAAGGTTTGCTGGTGATGGATGTTCTAAGCTAGCGAGCTACGGGAAGAC
TGGAAGCAAGAAACGAGAGTACTGCACTGAGCATGCCTCGGACGAAATGT
GTTTAGGCGAGGGTTGCTCTAAGTTACCAACCTACGGTAAGGCTGGAAGC
AAGAAACGGGAGTATTCCGCCGAGCATGTATTCGAGGAGACGGTTAATGT
TTCGAAGAAAATGTGTTCGGGGGATAGATGCTCTAACATATCTCCCTGCG
AAGGGCCCGGCAGCGTGAAGCGGGATTACTGCGCAAAACATGCTTTGGAG
GACATGGTGTGTATCGTCCCACACATCATTCCAAGTTCCAGGAAGCGGGT
GTCGAAGATCTCTTCATCGCCAGTATCCGTTTCGAAGATGTGGATAACCG
ACAATAAGGTTAGAGTCCCCTTTTCCGAGACTGCATCAGCTCCTGTTTTT
GTGAAGTCAGAGATATCAGTAACTAAATCCAAGTAGATGGTCAAGTTGTT
AAATATGACGCGTCCGAAAGATGGATGCTCTAAGCAACCGACGTCCGGGG
TGACCGGCCGCACGAACCGGGATCACTGCGCCATGCATACGCTAGAGGGC
GTGGCGAATGTTAAGATACAAATGTGTACCAGCGATAGCTGCTCTAAGGT
ACCAATCGAGGTTAAGGCTGGCAGCACAAAACGGGAGTACTGCGCTGAGA
ATGCCTTGGAGGGGATGGTCAATGTTTCGAACAAAATATGTGCTAGTGAT
TGGTGTTCTAAGCTAGCGAGCTACGGAGCAGCTGGAAGCAAGAATCGAGA
GTACTGCCCCGAGCACTTATTGGAGGGGATGGTCATTATTTCGAACAATA
AGTGTGCCAGTGATGGATGTTCTAAACGATCGTACTACGGAAAGGCTGGA
AGCACGAAGCGAGAGTACTGCGCTGAGCACACTCTGGAGGGAATGGTCAA
TCTTTCGAAGAAAAGGTGTGCTGGTGATGGGTGTTTTAAGATTTCAAGCT
ACGGAAGGGCTGGAACCAGGAATCGAGAGTACTGCGCTAAGCATGCCTTG
GAGGGGATGGTCAATCTTTTGAACAAAAGATGTGCTGGTGATGGATGTTA
TAAGCTAGCGAGCTGCGGAAAGGCCGGAAGCACGAAGCGAGAGTACTGCG
CTGAGCACACTCTGGAGGGAATGGTCAATATTTCGAACAAAAGGTGTGCC
CGTGATGGGTGCTTGAAGATTTCAAGCTACGGAAGGGCCGGAACCAGAAA
TCGGGAGTACTGCGCTAAGCATGCCTTCGAGGGGATGGTCAATCTTTCGA
AAAAAAGATGTGCTGTTGATGGATGTTATAAGCTAGCGAGCTGCGGAAAG
GCTGGAAGCATGAAACGAGAGTACTGCATTGAGCATGCCTTGAAGGGAAT
GGTTAATGTTTTGAACAAAATGTGTGCCAGTGAGGGGTGTTTTAAGACTT
CGTACTACGGAAAGGCCGGAAGCACGAATCGAGAGTTCTGCGCTAAGCAT
GCCTTGGAGGGGATGGTCAGTCTTTCGAACACAAGGTGTGTTGGTTATGG
GTGTGATAAGCTAGCGAGCTACGGGAAGGCCGGAAGCACGAAGCGAGAAT
ACTGCGCTGAGCACGCCTTGGAGGGAATGGTCAATCTTTCGAACAAAAGG
TGTGCTGGTTATGGGTGTGATAAGCTAGCGAGTTATGGAAGGGCCGGAAG
CACGAATCGAGAGTACTGCGCTAAGCATGCCTTGGAGGGGATGGTCAATC
TTTCGAACAAAAGATGTGCTGGTGATGGATGTTCTAAACGATCGTACTAC
GGAAAGGCCGGAAGCAAGAAACGAGAGTACTGCACTGAGCACTCACTGAA
GGGCATGGTCAATCTTTCGAGGGAAAGGTGTGCCGGTAATGGATGTCCTA
AACTAGCGAGTTATGGGAATGCCGGAAGCACGAAGCGAGAGTTCTGCGCT
AAGCATGCCTTGGAGGGGATGGTCAATCTTTCGAAAAAAAGGTTTGCTGG
TGATGGATGTTCTAAGCTAGCGAGCTACGGGAAGACTGGAAGCAAGAAAC
GAGAGTACTGCACTGAGCATGCCTCGGACGAAATGTGTTTAGGCGAGGGT
TGCTCTAAGTTACCAACCTACGGTAAGGCTGGAAGCAAGAAACGGGAGTA
TTCCGCCGAGCATGTATTCGAGGAGACGGTTAATGTTTCGAAGAAAATGT
GTTCGGGGGATAGATGCTCTAACATATCTCCCTGCGAAGGGCCCGGCAGC
GTGAAGCGGGATTACTGCGCAAAACATGCTTTGGAGGACATGGTGTGTAT
CGTCCCACACATCATTCCAAGTTCCAGGAAGCGGGTGTCGAAGATCTCTT
CATCGCCAGTATCCGTTTCGAAGATGTGGATAACCGACAATAAGGTTAGA
GTCCCCTTTTCCGAGACTGCATCAGCTCCTGTTTTTGTGAAGTCAGAGAT
ATCAGTAACTAAATCCAAGTAG
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