mRNA_H-elongata_contig61827.13743.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig61827.13743.1
Unique Name	mRNA_H-elongata_contig61827.13743.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig61827.13743.1 vs. uniprot

BLAST of mRNA_H-elongata_contig61827.13743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig61827	contig	H-elongata_contig61827:137..3122 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	2986
Cds size	1986
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig61827.13743.1	prot_H-elongata_contig61827.13743.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig61827 254..2239 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930997.5812674-UTR-H-elongata_contig61827:136..253	1622930997.5812674-UTR-H-elongata_contig61827:136..253	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig61827 137..253 +
1691679655.8011217-UTR-H-elongata_contig61827:136..253	1691679655.8011217-UTR-H-elongata_contig61827:136..253	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig61827 137..253 +
1622930997.6118343-UTR-H-elongata_contig61827:2239..3122	1622930997.6118343-UTR-H-elongata_contig61827:2239..3122	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig61827 2240..3122 +
1691679655.82293-UTR-H-elongata_contig61827:2239..3122	1691679655.82293-UTR-H-elongata_contig61827:2239..3122	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig61827 2240..3122 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930997.595799-CDS-H-elongata_contig61827:253..2239	1622930997.595799-CDS-H-elongata_contig61827:253..2239	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig61827 254..2239 +
1691679655.812854-CDS-H-elongata_contig61827:253..2239	1691679655.812854-CDS-H-elongata_contig61827:253..2239	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig61827 254..2239 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig61827:137..3122+
coding sequence from alignment at H-elongata_contig61827:137..3122+

protein sequence of mRNA_H-elongata_contig61827.13743.1

>prot_H-elongata_contig61827.13743.1 ID=prot_H-elongata_contig61827.13743.1|Name=mRNA_H-elongata_contig61827.13743.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=662bp
MVKLLNMTRPKDGCSKQPTSGVTGRTNRDHCAMHTLEGVANVKIQMCTSD
SCSKVPIEVKAGSTKREYCAENALEGMVNVSNKICASDWCSKLASYGAAG
SKNREYCPEHLLEGMVIISNNKCASDGCSKRSYYGKAGSTKREYCAEHTL
EGMVNLSKKRCAGDGCFKISSYGRAGTRNREYCAKHALEGMVNLLNKRCA
GDGCYKLASCGKAGSTKREYCAEHTLEGMVNISNKRCARDGCLKISSYGR
AGTRNREYCAKHAFEGMVNLSKKRCAVDGCYKLASCGKAGSMKREYCIEH
ALKGMVNVLNKMCASEGCFKTSYYGKAGSTNREFCAKHALEGMVSLSNTR
CVGYGCDKLASYGKAGSTKREYCAEHALEGMVNLSNKRCAGYGCDKLASY
GRAGSTNREYCAKHALEGMVNLSNKRCAGDGCSKRSYYGKAGSKKREYCT
EHSLKGMVNLSRERCAGNGCPKLASYGNAGSTKREFCAKHALEGMVNLSK
KRFAGDGCSKLASYGKTGSKKREYCTEHASDEMCLGEGCSKLPTYGKAGS
KKREYSAEHVFEETVNVSKKMCSGDRCSNISPCEGPGSVKRDYCAKHALE
DMVCIVPHIIPSSRKRVSKISSSPVSVSKMWITDNKVRVPFSETASAPVF
VKSEISVTKSK*

mRNA from alignment at H-elongata_contig61827:137..3122+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig61827.13743.1 ID=mRNA_H-elongata_contig61827.13743.1|Name=mRNA_H-elongata_contig61827.13743.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2986bp|location=Sequence derived from alignment at H-elongata_contig61827:137..3122+ (Himanthalia elongata Himel1 dioecious)
TAGGTCCGTCGACTTTTATCAGAAGATGCACGGGCGGTGGATGCTGTAAG
GTATCCAGCTGCTCAATAACTAGCTGCGAAAAGTGCAAGTGCCGCGCCGA
GTATTTCGTGGAGGGAAATGGTCAAGTTGTTAAATATGACGCGTCCGAAA
GATGGATGCTCTAAGCAACCGACGTCCGGGGTGACCGGCCGCACGAACCG
GGATCACTGCGCCATGCATACGCTAGAGGGCGTGGCGAATGTTAAGATAC
AAATGTGTACCAGCGATAGCTGCTCTAAGGTACCAATCGAGGTTAAGGCT
GGCAGCACAAAACGGGAGTACTGCGCTGAGAATGCCTTGGAGGGGATGGT
CAATGTTTCGAACAAAATATGTGCTAGTGATTGGTGTTCTAAGCTAGCGA
GCTACGGAGCAGCTGGAAGCAAGAATCGAGAGTACTGCCCCGAGCACTTA
TTGGAGGGGATGGTCATTATTTCGAACAATAAGTGTGCCAGTGATGGATG
TTCTAAACGATCGTACTACGGAAAGGCTGGAAGCACGAAGCGAGAGTACT
GCGCTGAGCACACTCTGGAGGGAATGGTCAATCTTTCGAAGAAAAGGTGT
GCTGGTGATGGGTGTTTTAAGATTTCAAGCTACGGAAGGGCTGGAACCAG
GAATCGAGAGTACTGCGCTAAGCATGCCTTGGAGGGGATGGTCAATCTTT
TGAACAAAAGATGTGCTGGTGATGGATGTTATAAGCTAGCGAGCTGCGGA
AAGGCCGGAAGCACGAAGCGAGAGTACTGCGCTGAGCACACTCTGGAGGG
AATGGTCAATATTTCGAACAAAAGGTGTGCCCGTGATGGGTGCTTGAAGA
TTTCAAGCTACGGAAGGGCCGGAACCAGAAATCGGGAGTACTGCGCTAAG
CATGCCTTCGAGGGGATGGTCAATCTTTCGAAAAAAAGATGTGCTGTTGA
TGGATGTTATAAGCTAGCGAGCTGCGGAAAGGCTGGAAGCATGAAACGAG
AGTACTGCATTGAGCATGCCTTGAAGGGAATGGTTAATGTTTTGAACAAA
ATGTGTGCCAGTGAGGGGTGTTTTAAGACTTCGTACTACGGAAAGGCCGG
AAGCACGAATCGAGAGTTCTGCGCTAAGCATGCCTTGGAGGGGATGGTCA
GTCTTTCGAACACAAGGTGTGTTGGTTATGGGTGTGATAAGCTAGCGAGC
TACGGGAAGGCCGGAAGCACGAAGCGAGAATACTGCGCTGAGCACGCCTT
GGAGGGAATGGTCAATCTTTCGAACAAAAGGTGTGCTGGTTATGGGTGTG
ATAAGCTAGCGAGTTATGGAAGGGCCGGAAGCACGAATCGAGAGTACTGC
GCTAAGCATGCCTTGGAGGGGATGGTCAATCTTTCGAACAAAAGATGTGC
TGGTGATGGATGTTCTAAACGATCGTACTACGGAAAGGCCGGAAGCAAGA
AACGAGAGTACTGCACTGAGCACTCACTGAAGGGCATGGTCAATCTTTCG
AGGGAAAGGTGTGCCGGTAATGGATGTCCTAAACTAGCGAGTTATGGGAA
TGCCGGAAGCACGAAGCGAGAGTTCTGCGCTAAGCATGCCTTGGAGGGGA
TGGTCAATCTTTCGAAAAAAAGGTTTGCTGGTGATGGATGTTCTAAGCTA
GCGAGCTACGGGAAGACTGGAAGCAAGAAACGAGAGTACTGCACTGAGCA
TGCCTCGGACGAAATGTGTTTAGGCGAGGGTTGCTCTAAGTTACCAACCT
ACGGTAAGGCTGGAAGCAAGAAACGGGAGTATTCCGCCGAGCATGTATTC
GAGGAGACGGTTAATGTTTCGAAGAAAATGTGTTCGGGGGATAGATGCTC
TAACATATCTCCCTGCGAAGGGCCCGGCAGCGTGAAGCGGGATTACTGCG
CAAAACATGCTTTGGAGGACATGGTGTGTATCGTCCCACACATCATTCCA
AGTTCCAGGAAGCGGGTGTCGAAGATCTCTTCATCGCCAGTATCCGTTTC
GAAGATGTGGATAACCGACAATAAGGTTAGAGTCCCCTTTTCCGAGACTG
CATCAGCTCCTGTTTTTGTGAAGTCAGAGATATCAGTAACTAAATCCAAG
TAGATATTGTTTTGGAAATGATTTTAAAGGAGAGTCTCTTTGTCAACGGG
AGCGATGACATTGCGCTCCATGGGTTATATGTCTAAAATACCCTTTCTTG
AGCATGCTCAGCTGACAACAAGCAGGAGGCAACCAAATCGGGTTGATTCT
TACTCTGCATTGATTTAGATGTCATATAATTGCAACAAGTAGCCTACGTA
AAACTAGTAACTTGGTTAATAATTCTAAAAGAGATAGCATAACCCCAACA
TTGAGGGGCCGGACGCGTTCGATATAACTCACAATGCACGTGGTCCGCTT
GACGGTACATCTCATGGAGTCAGAGATATCAGCAACTCTGTAAGTAGGTA
TTGTTTTGGAAAGGATTTAAGAGGGGACTCTCTTCGCCAACGGGAGCGAT
AACATTGCGCCCCATGGGTTATATGTTTAACATACTTTTTCATAAGCATG
CTCAGCTGACCACAAGCAGGAGGCAACCAAATCGGGTTGATTCCTACTCT
GCGTTGATTTAAATGTCAGATCATTGCAACAAGTAGCGTACGTAAAAGTA
GTAACTTAGCTAATTCAAAGAGACATGACATGACCCCAACATTGAGGGGC
CGGACGCGTTCGATCCCCTTGACGGCACATCTCATGCTCCTAAGAATGTG
TGTATGATCAAAGAGTTTGAAAAAGTTCACATGGCCACAATGAGCCGGGG
GAGCTTCATCACTGAGATATGCCCATAACCTCACCGCCCAATGAGCCTCA
TTATCGTGCTCCAGTAGGTTATACATCTCTTGATATGTACATAATATAGT
AGAATATGGATCAGCCGAATATAAGTGGTTTCCATACTGGTCGTGGTCAG
TTGAGGAGGAATAACATTTTTCCATGGCCCCTCTGG

Coding sequence (CDS) from alignment at H-elongata_contig61827:137..3122+

>mRNA_H-elongata_contig61827.13743.1 ID=mRNA_H-elongata_contig61827.13743.1|Name=mRNA_H-elongata_contig61827.13743.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3972bp|location=Sequence derived from alignment at H-elongata_contig61827:137..3122+ (Himanthalia elongata Himel1 dioecious)
ATGGTCAAGTTGTTAAATATGACGCGTCCGAAAGATGGATGCTCTAAGCA
ACCGACGTCCGGGGTGACCGGCCGCACGAACCGGGATCACTGCGCCATGC
ATACGCTAGAGGGCGTGGCGAATGTTAAGATACAAATGTGTACCAGCGAT
AGCTGCTCTAAGGTACCAATCGAGGTTAAGGCTGGCAGCACAAAACGGGA
GTACTGCGCTGAGAATGCCTTGGAGGGGATGGTCAATGTTTCGAACAAAA
TATGTGCTAGTGATTGGTGTTCTAAGCTAGCGAGCTACGGAGCAGCTGGA
AGCAAGAATCGAGAGTACTGCCCCGAGCACTTATTGGAGGGGATGGTCAT
TATTTCGAACAATAAGTGTGCCAGTGATGGATGTTCTAAACGATCGTACT
ACGGAAAGGCTGGAAGCACGAAGCGAGAGTACTGCGCTGAGCACACTCTG
GAGGGAATGGTCAATCTTTCGAAGAAAAGGTGTGCTGGTGATGGGTGTTT
TAAGATTTCAAGCTACGGAAGGGCTGGAACCAGGAATCGAGAGTACTGCG
CTAAGCATGCCTTGGAGGGGATGGTCAATCTTTTGAACAAAAGATGTGCT
GGTGATGGATGTTATAAGCTAGCGAGCTGCGGAAAGGCCGGAAGCACGAA
GCGAGAGTACTGCGCTGAGCACACTCTGGAGGGAATGGTCAATATTTCGA
ACAAAAGGTGTGCCCGTGATGGGTGCTTGAAGATTTCAAGCTACGGAAGG
GCCGGAACCAGAAATCGGGAGTACTGCGCTAAGCATGCCTTCGAGGGGAT
GGTCAATCTTTCGAAAAAAAGATGTGCTGTTGATGGATGTTATAAGCTAG
CGAGCTGCGGAAAGGCTGGAAGCATGAAACGAGAGTACTGCATTGAGCAT
GCCTTGAAGGGAATGGTTAATGTTTTGAACAAAATGTGTGCCAGTGAGGG
GTGTTTTAAGACTTCGTACTACGGAAAGGCCGGAAGCACGAATCGAGAGT
TCTGCGCTAAGCATGCCTTGGAGGGGATGGTCAGTCTTTCGAACACAAGG
TGTGTTGGTTATGGGTGTGATAAGCTAGCGAGCTACGGGAAGGCCGGAAG
CACGAAGCGAGAATACTGCGCTGAGCACGCCTTGGAGGGAATGGTCAATC
TTTCGAACAAAAGGTGTGCTGGTTATGGGTGTGATAAGCTAGCGAGTTAT
GGAAGGGCCGGAAGCACGAATCGAGAGTACTGCGCTAAGCATGCCTTGGA
GGGGATGGTCAATCTTTCGAACAAAAGATGTGCTGGTGATGGATGTTCTA
AACGATCGTACTACGGAAAGGCCGGAAGCAAGAAACGAGAGTACTGCACT
GAGCACTCACTGAAGGGCATGGTCAATCTTTCGAGGGAAAGGTGTGCCGG
TAATGGATGTCCTAAACTAGCGAGTTATGGGAATGCCGGAAGCACGAAGC
GAGAGTTCTGCGCTAAGCATGCCTTGGAGGGGATGGTCAATCTTTCGAAA
AAAAGGTTTGCTGGTGATGGATGTTCTAAGCTAGCGAGCTACGGGAAGAC
TGGAAGCAAGAAACGAGAGTACTGCACTGAGCATGCCTCGGACGAAATGT
GTTTAGGCGAGGGTTGCTCTAAGTTACCAACCTACGGTAAGGCTGGAAGC
AAGAAACGGGAGTATTCCGCCGAGCATGTATTCGAGGAGACGGTTAATGT
TTCGAAGAAAATGTGTTCGGGGGATAGATGCTCTAACATATCTCCCTGCG
AAGGGCCCGGCAGCGTGAAGCGGGATTACTGCGCAAAACATGCTTTGGAG
GACATGGTGTGTATCGTCCCACACATCATTCCAAGTTCCAGGAAGCGGGT
GTCGAAGATCTCTTCATCGCCAGTATCCGTTTCGAAGATGTGGATAACCG
ACAATAAGGTTAGAGTCCCCTTTTCCGAGACTGCATCAGCTCCTGTTTTT
GTGAAGTCAGAGATATCAGTAACTAAATCCAAGTAGATGGTCAAGTTGTT
AAATATGACGCGTCCGAAAGATGGATGCTCTAAGCAACCGACGTCCGGGG
TGACCGGCCGCACGAACCGGGATCACTGCGCCATGCATACGCTAGAGGGC
GTGGCGAATGTTAAGATACAAATGTGTACCAGCGATAGCTGCTCTAAGGT
ACCAATCGAGGTTAAGGCTGGCAGCACAAAACGGGAGTACTGCGCTGAGA
ATGCCTTGGAGGGGATGGTCAATGTTTCGAACAAAATATGTGCTAGTGAT
TGGTGTTCTAAGCTAGCGAGCTACGGAGCAGCTGGAAGCAAGAATCGAGA
GTACTGCCCCGAGCACTTATTGGAGGGGATGGTCATTATTTCGAACAATA
AGTGTGCCAGTGATGGATGTTCTAAACGATCGTACTACGGAAAGGCTGGA
AGCACGAAGCGAGAGTACTGCGCTGAGCACACTCTGGAGGGAATGGTCAA
TCTTTCGAAGAAAAGGTGTGCTGGTGATGGGTGTTTTAAGATTTCAAGCT
ACGGAAGGGCTGGAACCAGGAATCGAGAGTACTGCGCTAAGCATGCCTTG
GAGGGGATGGTCAATCTTTTGAACAAAAGATGTGCTGGTGATGGATGTTA
TAAGCTAGCGAGCTGCGGAAAGGCCGGAAGCACGAAGCGAGAGTACTGCG
CTGAGCACACTCTGGAGGGAATGGTCAATATTTCGAACAAAAGGTGTGCC
CGTGATGGGTGCTTGAAGATTTCAAGCTACGGAAGGGCCGGAACCAGAAA
TCGGGAGTACTGCGCTAAGCATGCCTTCGAGGGGATGGTCAATCTTTCGA
AAAAAAGATGTGCTGTTGATGGATGTTATAAGCTAGCGAGCTGCGGAAAG
GCTGGAAGCATGAAACGAGAGTACTGCATTGAGCATGCCTTGAAGGGAAT
GGTTAATGTTTTGAACAAAATGTGTGCCAGTGAGGGGTGTTTTAAGACTT
CGTACTACGGAAAGGCCGGAAGCACGAATCGAGAGTTCTGCGCTAAGCAT
GCCTTGGAGGGGATGGTCAGTCTTTCGAACACAAGGTGTGTTGGTTATGG
GTGTGATAAGCTAGCGAGCTACGGGAAGGCCGGAAGCACGAAGCGAGAAT
ACTGCGCTGAGCACGCCTTGGAGGGAATGGTCAATCTTTCGAACAAAAGG
TGTGCTGGTTATGGGTGTGATAAGCTAGCGAGTTATGGAAGGGCCGGAAG
CACGAATCGAGAGTACTGCGCTAAGCATGCCTTGGAGGGGATGGTCAATC
TTTCGAACAAAAGATGTGCTGGTGATGGATGTTCTAAACGATCGTACTAC
GGAAAGGCCGGAAGCAAGAAACGAGAGTACTGCACTGAGCACTCACTGAA
GGGCATGGTCAATCTTTCGAGGGAAAGGTGTGCCGGTAATGGATGTCCTA
AACTAGCGAGTTATGGGAATGCCGGAAGCACGAAGCGAGAGTTCTGCGCT
AAGCATGCCTTGGAGGGGATGGTCAATCTTTCGAAAAAAAGGTTTGCTGG
TGATGGATGTTCTAAGCTAGCGAGCTACGGGAAGACTGGAAGCAAGAAAC
GAGAGTACTGCACTGAGCATGCCTCGGACGAAATGTGTTTAGGCGAGGGT
TGCTCTAAGTTACCAACCTACGGTAAGGCTGGAAGCAAGAAACGGGAGTA
TTCCGCCGAGCATGTATTCGAGGAGACGGTTAATGTTTCGAAGAAAATGT
GTTCGGGGGATAGATGCTCTAACATATCTCCCTGCGAAGGGCCCGGCAGC
GTGAAGCGGGATTACTGCGCAAAACATGCTTTGGAGGACATGGTGTGTAT
CGTCCCACACATCATTCCAAGTTCCAGGAAGCGGGTGTCGAAGATCTCTT
CATCGCCAGTATCCGTTTCGAAGATGTGGATAACCGACAATAAGGTTAGA
GTCCCCTTTTCCGAGACTGCATCAGCTCCTGTTTTTGTGAAGTCAGAGAT
ATCAGTAACTAAATCCAAGTAG