mRNA_H-elongata_contig61809.13741.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61809.13741.1
Unique NamemRNA_H-elongata_contig61809.13741.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig61809.13741.1 vs. uniprot
Match: A0A835YKK5_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKK5_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.480e-5
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:    1 VSSKSKIGHTPLHLACRFGHLPVVLLLLAEGADINARDN 117
            V +    GHTPLHLACR+GH+ V L LL +G DI+A D+
Sbjct:   25 VHAPHSAGHTPLHLACRYGHVSVALALLIKGCDIDACDS 63
[Close]
BLAST of mRNA_H-elongata_contig61809.13741.1 vs. uniprot
Match: A0A4Z1ED95_9HELO (Uncharacterized protein n=1 Tax=Botrytis tulipae TaxID=87230 RepID=A0A4Z1ED95_9HELO)

HSP 1 Score: 51.6 bits (122), Expect = 7.160e-5
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 VSSKSKIGHTPLHLACRFGHLPVVLLLLAEGADINARDND 120
            + + + IG T LHLACRF H  +V LLLA GA+I ARDND
Sbjct:  141 IETTNWIGETALHLACRFDHKNIVALLLAVGANIEARDND 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61809.13741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YKK5_9STRA1.480e-556.41Ankyrin repeat-containing domain protein (Fragment... [more]
A0A4Z1ED95_9HELO7.160e-560.00Uncharacterized protein n=1 Tax=Botrytis tulipae T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61809contigH-elongata_contig61809:1177..3144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size411
Cds size411
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61809.13741.1prot_H-elongata_contig61809.13741.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61809 1177..3144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930997.1042297-CDS-H-elongata_contig61809:1176..13171622930997.1042297-CDS-H-elongata_contig61809:1176..1317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61809 1177..1317 +
1691679655.5246599-CDS-H-elongata_contig61809:1176..13171691679655.5246599-CDS-H-elongata_contig61809:1176..1317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61809 1177..1317 +
1622930997.1234586-CDS-H-elongata_contig61809:1611..17221622930997.1234586-CDS-H-elongata_contig61809:1611..1722Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61809 1612..1722 +
1691679655.533946-CDS-H-elongata_contig61809:1611..17221691679655.533946-CDS-H-elongata_contig61809:1611..1722Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61809 1612..1722 +
1622930997.145281-CDS-H-elongata_contig61809:2985..31441622930997.145281-CDS-H-elongata_contig61809:2985..3144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61809 2986..3144 +
1691679655.5436928-CDS-H-elongata_contig61809:2985..31441691679655.5436928-CDS-H-elongata_contig61809:2985..3144Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61809 2986..3144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61809.13741.1

>prot_H-elongata_contig61809.13741.1 ID=prot_H-elongata_contig61809.13741.1|Name=mRNA_H-elongata_contig61809.13741.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
VSSKSKIGHTPLHLACRFGHLPVVLLLLAEGADINARDNDHNTPLHKAAS
NGKTQLCRELVKRGADVDARNSAEYTPLHWACFKGHKGAAEQLLKCGANI
DATNSRRATGLFMSSYYGHGDITFLLIAWGKVPNVL*
back to top

mRNA from alignment at H-elongata_contig61809:1177..3144+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61809.13741.1 ID=mRNA_H-elongata_contig61809.13741.1|Name=mRNA_H-elongata_contig61809.13741.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1968bp|location=Sequence derived from alignment at H-elongata_contig61809:1177..3144+ (Himanthalia elongata Himel1 dioecious)
GTGAGCTCGAAGAGCAAAATTGGGCACACACCGCTGCACCTGGCGTGTCG
TTTCGGGCACCTCCCGGTGGTACTGCTGTTGCTTGCCGAGGGTGCTGACA
TCAACGCCCGGGACAACGATCACAACACTCCCTTACACAAGGTATAGACT
TGGCTGTTGTAACCGGTATTGCTACGCGGCTGGACTCGTCGTGCGTGCGG
TAGATTATTCAGTTCAATTTATGCCGTGTTGTTAATAACACTAATCATAA
TAATCGGGGGCACACTCTATTTGAAGAAGGGTATAATCGCATCTTTTTTA
GCCTTTTGGCTGATTTTGCGTGTGTCTATGAAGGAAAGCTTAGGCTAAAG
CCTCCGCTGCTGTACAGGATATTGTATACTAGACCTGCATATTTAGCGTT
CTATTTTTCTCCTGTTGTTGGGTTGGAATCGGCAGGCGGCGAGCAACGGC
AAGACGCAGCTATGTCGGGAGTTGGTAAAGAGGGGCGCAGACGTCGACGC
CAGGAACTCCGCGGAGTACACACCGCTTCACTGGGCATGCTTCAAGGTAA
CACACATATATACTTACACCATTCAGTATGGGCGGTACTGGGTTGGGAGA
ATGAGCGGGCTGACGCGAGACAAGACGGTCGAACCCGTCTTGTCTAAACC
GCACAACCGACACTATACGTAAGGGGGCGCCACGCCGGTTTGCAAATACC
CCGCACAAACACACCTTATGGGGAGCTATTTAGCTATTCCTGGAGACGTT
GGATTGGCATATTATCCCACTCGCGTTGCTTACGCAACCACGCTGGACTA
TCGCTGCAAGTCTCCCTCCTGTCCCCGCTTCCCCCCCTCTGGGCGAAACA
CTCCGTGGCGTTGGAATTTTGAATGCCGCCGAGGCTCGAAGCCCCATCTG
TTCAGCTGGCCACAAGCAGGCGACAGTCGATTCCGGTTGATCCACACATT
GCTACGTATAATATGTAATCGCTGCTGCAGTGTCACGCACATCTATCTCG
CATTATAGGGGGCGGAGAGATACCATCACCATTCGCGTGTATCATACCTA
GTAAATATCAGTACAGCAATAAGGTATATCAAGGATACTAAACTTTATAT
CTTTGAAGTCCTTTCCTGTCACTCCCAAAATCAATACTAATAATAGTTAA
CTAGTCGTTCAAGGGGTTTTTTAAATGAAAATAACTATTATGGTAGAGAT
GAGGCGATGGGGAAAATAGAAAATATGGGTCATCAGGAGTTAGCACGGCA
CAAGAAATATATATGGATTGTGTGTAATTATTTATAATATTAATTATAGT
AATAGTTGACTACTCCGTCCGAAGCCGTGGGTCTAGACGTGTGTGCACCG
TTTTATCAGATTACTGTAAGGGGGATGACGGATAAGTGTGTGAAGTCGAT
TGCCCTTTTCCCTTTTATTGTTTGTTTCCTTTATCGTACATCACAATGTA
CATATTATCCATATTTCGCTCTTCATGTTATTTCTGGGGGCGGGAGGGTT
CACTCTACAATGATTTTTGTGTCTTGTTTAAAGTATTGGACTTGATGTTA
TTTTTGTTTTTCTTCCCCACCTTTGTTCCGCTGCTGACCAGGGACGAACG
GGACTGTCAATTTAATAGACCAGGACCGGTCGCTAAATAATAAGCGAATT
CAATCAATCATCAATCAAGGCAACACACCACCAATCAATGTTCCTTTTCG
CGGCGTAACCGTCGATCTTCCTCCTTCGTGTGTATGATGGACGGACTACT
CACGGTGGATCTTTTGACGCTCGTTTCCGTAATACTACTTTGATATCCAT
AATATAAAGGGGCACAAGGGGGCCGCGGAGCAGCTCCTCAAGTGCGGCGC
CAACATCGACGCCACAAACTCCCGAAGGGCCACCGGGCTCTTCATGTCTT
CGTACTACGGACACGGCGACATCACATTTCTTCTGATTGCCTGGGGTAAG
GTGCCAAACGTACTGTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig61809:1177..3144+

>mRNA_H-elongata_contig61809.13741.1 ID=mRNA_H-elongata_contig61809.13741.1|Name=mRNA_H-elongata_contig61809.13741.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig61809:1177..3144+ (Himanthalia elongata Himel1 dioecious)
GTGAGCTCGAAGAGCAAAATTGGGCACACACCGCTGCACCTGGCGTGTCG
TTTCGGGCACCTCCCGGTGGTACTGCTGTTGCTTGCCGAGGGTGCTGACA
TCAACGCCCGGGACAACGATCACAACACTCCCTTACACAAGGTGAGCTCG
AAGAGCAAAATTGGGCACACACCGCTGCACCTGGCGTGTCGTTTCGGGCA
CCTCCCGGTGGTACTGCTGTTGCTTGCCGAGGGTGCTGACATCAACGCCC
GGGACAACGATCACAACACTCCCTTACACAAGGCGGCGAGCAACGGCAAG
ACGCAGCTATGTCGGGAGTTGGTAAAGAGGGGCGCAGACGTCGACGCCAG
GAACTCCGCGGAGTACACACCGCTTCACTGGGCATGCTTCAAGGCGGCGA
GCAACGGCAAGACGCAGCTATGTCGGGAGTTGGTAAAGAGGGGCGCAGAC
GTCGACGCCAGGAACTCCGCGGAGTACACACCGCTTCACTGGGCATGCTT
CAAGGGGCACAAGGGGGCCGCGGAGCAGCTCCTCAAGTGCGGCGCCAACA
TCGACGCCACAAACTCCCGAAGGGCCACCGGGCTCTTCATGTCTTCGTAC
TACGGACACGGCGACATCACATTTCTTCTGATTGCCTGGGGTAAGGTGCC
AAACGTACTGTAGGGGCACAAGGGGGCCGCGGAGCAGCTCCTCAAGTGCG
GCGCCAACATCGACGCCACAAACTCCCGAAGGGCCACCGGGCTCTTCATG
TCTTCGTACTACGGACACGGCGACATCACATTTCTTCTGATTGCCTGGGG
TAAGGTGCCAAACGTACTGTAG
back to top