mRNA_H-elongata_contig61797.13740.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61797.13740.1
Unique NamemRNA_H-elongata_contig61797.13740.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61797.13740.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 3.290e-45
Identity = 138/428 (32.24%), Postives = 207/428 (48.36%), Query Frame = 1
Query:   19 DSGAAEHMTQDPAGLEDYTPASAEDRVESTGGTLLPVAGYGHLPLLVDQGNGNFTYSTRQLTLKHVAHVPNLGQHILLSTKRRLQFFDAPMRVYPTTALIRPRRGGMPLFFRPLRPEN--GLLEIKVRRHVTAKSRLPKTPTATALAA-TQRGPR-----DIMKFHQVLGHLAEKITRNTARMAGVQLSRIWRPCVHCSESRVRRYAVPKSTENRADRHAGRLFIDLSSPFHEKSLGGNRFIMLCIDDFTRFKMVRFLKHKNDATDILRDIINDYVAPEGLK--IGVIRTDGGGKWHG-QFLSFLRKLGIKRDSTSPYTTQYNGVVERALGLLRDKTVA-------LLQGVMEGKSDRLWAEAMAYACDMWNRCTSSSLDSGNSPYELWYGRRPRFDNIPPFWTVGYLRRSTPGHKLAPRGASCIMLG 1248
            D+G A HMT   A ++D  P      V   GG    ++  G L L+    +  F+     + LK+V + PNLG ++   +      FD          L  P  G M  F   +  +N  G+L       + +  RL +    T LAA T   P+     D+ +FH +  H  + + R TA+  G +L      C  CS ++  +  + + T++R+D+  GR+F+DL       S+GG  + M+  DDFTR   + FLKHK+DA    R  +   V  +G+   + ++R+D GG++ G +F S   +L IK++ T  Y+ QYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N    S+     SPYE+WYG  PR     PF    Y R   P  KL P+G SC  +G
Sbjct:  528 DTGTAFHMTDSLACMKDLKPCHKS--VNGIGGVSCEISFSGTLELVFVTADSEFS-----MELKNVLYSPNLGYNLFSPSAE----FDGES----WNGLGGPD-GVMTAFKGQVTFQNFDGML-------IASAYRLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLAS-VRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVG 929          
BLAST of mRNA_H-elongata_contig61797.13740.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 4.560e-45
Identity = 138/428 (32.24%), Postives = 207/428 (48.36%), Query Frame = 1
Query:   19 DSGAAEHMTQDPAGLEDYTPASAEDRVESTGGTLLPVAGYGHLPLLVDQGNGNFTYSTRQLTLKHVAHVPNLGQHILLSTKRRLQFFDAPMRVYPTTALIRPRRGGMPLFFRPLRPEN--GLLEIKVRRHVTAKSRLPKTPTATALAA-TQRGPR-----DIMKFHQVLGHLAEKITRNTARMAGVQLSRIWRPCVHCSESRVRRYAVPKSTENRADRHAGRLFIDLSSPFHEKSLGGNRFIMLCIDDFTRFKMVRFLKHKNDATDILRDIINDYVAPEGLK--IGVIRTDGGGKWHG-QFLSFLRKLGIKRDSTSPYTTQYNGVVERALGLLRDKTVA-------LLQGVMEGKSDRLWAEAMAYACDMWNRCTSSSLDSGNSPYELWYGRRPRFDNIPPFWTVGYLRRSTPGHKLAPRGASCIMLG 1248
            D+G A HMT   A ++D  P      V   GG    ++  G L L+    +  F+     + LK+V + PNLG ++   +      FD          L  P  G M  F   +  +N  G+L       + +  RL +    T LAA T   P+     D+ +FH +  H  + + R TA+  G +L      C  CS ++  +  + + T++R+D+  GR+F+DL       S+GG  + M+  DDFTR   + FLKHK+DA    R  +   V  +G+   + ++R+D GG++ G +F S   +L IK++ T  Y+ QYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N    S+     SPYE+WYG  PR     PF    Y R   P  KL P+G SC  +G
Sbjct:  235 DTGTAFHMTDSLACMKDLKPCHKS--VNGIGGVSCEISFSGTLELVFVTADSEFS-----VELKNVLYSPNLGYNLFSPSAE----FDGES----WNGLGGPD-GVMTAFKGQVTFQNFDGML-------IASAYRLGEASVGTVLAALTPSNPKHKTTMDVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLAS-VRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVG 636          
BLAST of mRNA_H-elongata_contig61797.13740.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 7.280e-44
Identity = 138/432 (31.94%), Postives = 202/432 (46.76%), Query Frame = 1
Query:   13 VNDSGAAEHMTQDPAGLEDYTPASAEDRVESTGGTLLPVAGYGHLPLLVDQGNGNFTYSTRQLTLKHVAHVPNLGQHILLSTKRRLQFFDAPMRVYPTTALIRPRRGGMPLFFRPLRPENGLLEIKVRRHVTAKSRLPKTPTATALAATQRG-------PRDIMKFHQVLGHLAEKITRNTARMAGVQLSRIWRPCVHCSESRVRRYAVPKSTENRADRHAGRLFIDLSSPFHEKSLGGNRFIMLCIDDFTRFKMVRFLKHKNDATDIL-RDIINDYVAPEGLKIGVIRTDGGGKW-HGQFLSFLRKLGIKRDSTSPYTTQYNGVVERALGLLRDKTVA-------LLQGVMEGKSDRLWAEAMAYACDMWNRCTSSSLDSGNSPYELWYGRRPRFDNIPPFWTVGYLRRST----PGHKLAPRGASCIMLG 1248
            V D+GA  HM  +  G   Y     + RV    G   P+ GYG + + +   +G     T  L LK VAHVP L  +++  T      F+   +      L   R GG  ++F    P  G L ++            +T T  A AA   G       P DI  FH   GH  E + R TA+  G  L    R C+ CS ++     +P  T  RA +   R+F+DLS     +SLGG  + ++  DD+TR+  V FLKHK+DA +   R +  +        + V+R+D GG++  G+F    RK  IK++ T  ++ +YNGV ERALGL++D  +A       L  G     S  LWAEA+A++C+  N  +++S     SPYE+W+G  P     PP  T  +L+ +       HK  P+   C  LG
Sbjct:  370 VADTGATTHMFANSDGFVRYE--ECDRRVRVAAGETFPIVGYGDVTVTLSSRDG-----TTDLLLKRVAHVPRLDYNLVSLTSLFDDGFET--KTLNKHELELERGGGEVVYF----PRCGNLYVQNGF---------RTHTEHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLG 772          
BLAST of mRNA_H-elongata_contig61797.13740.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 7.360e-44
Identity = 138/432 (31.94%), Postives = 202/432 (46.76%), Query Frame = 1
Query:   13 VNDSGAAEHMTQDPAGLEDYTPASAEDRVESTGGTLLPVAGYGHLPLLVDQGNGNFTYSTRQLTLKHVAHVPNLGQHILLSTKRRLQFFDAPMRVYPTTALIRPRRGGMPLFFRPLRPENGLLEIKVRRHVTAKSRLPKTPTATALAATQRG-------PRDIMKFHQVLGHLAEKITRNTARMAGVQLSRIWRPCVHCSESRVRRYAVPKSTENRADRHAGRLFIDLSSPFHEKSLGGNRFIMLCIDDFTRFKMVRFLKHKNDATDIL-RDIINDYVAPEGLKIGVIRTDGGGKW-HGQFLSFLRKLGIKRDSTSPYTTQYNGVVERALGLLRDKTVA-------LLQGVMEGKSDRLWAEAMAYACDMWNRCTSSSLDSGNSPYELWYGRRPRFDNIPPFWTVGYLRRST----PGHKLAPRGASCIMLG 1248
            V D+GA  HM  +  G   Y     + RV    G   P+ GYG + + +   +G     T  L LK VAHVP L  +++  T      F+   +      L   R GG  ++F    P  G L ++            +T T  A AA   G       P DI  FH   GH  E + R TA+  G  L    R C+ CS ++     +P  T  RA +   R+F+DLS     +SLGG  + ++  DD+TR+  V FLKHK+DA +   R +  +        + V+R+D GG++  G+F    RK  IK++ T  ++ +YNGV ERALGL++D  +A       L  G     S  LWAEA+A++C+  N  +++S     SPYE+W+G  P     PP  T  +L+ +       HK  P+   C  LG
Sbjct:  383 VADTGATTHMFANSDGFVRYE--ECDRRVRVAAGETFPIVGYGDVTVTLSSRDG-----TTDLLLKRVAHVPRLDYNLVSLTSLFDDGFET--KTLNKHELELERGGGEVVYF----PRCGNLYVQNGF---------RTHTEHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLG 785          
BLAST of mRNA_H-elongata_contig61797.13740.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 7.460e-44
Identity = 138/432 (31.94%), Postives = 202/432 (46.76%), Query Frame = 1
Query:   13 VNDSGAAEHMTQDPAGLEDYTPASAEDRVESTGGTLLPVAGYGHLPLLVDQGNGNFTYSTRQLTLKHVAHVPNLGQHILLSTKRRLQFFDAPMRVYPTTALIRPRRGGMPLFFRPLRPENGLLEIKVRRHVTAKSRLPKTPTATALAATQRG-------PRDIMKFHQVLGHLAEKITRNTARMAGVQLSRIWRPCVHCSESRVRRYAVPKSTENRADRHAGRLFIDLSSPFHEKSLGGNRFIMLCIDDFTRFKMVRFLKHKNDATDIL-RDIINDYVAPEGLKIGVIRTDGGGKW-HGQFLSFLRKLGIKRDSTSPYTTQYNGVVERALGLLRDKTVA-------LLQGVMEGKSDRLWAEAMAYACDMWNRCTSSSLDSGNSPYELWYGRRPRFDNIPPFWTVGYLRRST----PGHKLAPRGASCIMLG 1248
            V D+GA  HM  +  G   Y     + RV    G   P+ GYG + + +   +G     T  L LK VAHVP L  +++  T      F+   +      L   R GG  ++F    P  G L ++            +T T  A AA   G       P DI  FH   GH  E + R TA+  G  L    R C+ CS ++     +P  T  RA +   R+F+DLS     +SLGG  + ++  DD+TR+  V FLKHK+DA +   R +  +        + V+R+D GG++  G+F    RK  IK++ T  ++ +YNGV ERALGL++D  +A       L  G     S  LWAEA+A++C+  N  +++S     SPYE+W+G  P     PP  T  +L+ +       HK  P+   C  LG
Sbjct:  526 VADTGATTHMFANSDGFVRYE--ECDRRVRVAAGETFPIVGYGDVTVTLSSRDG-----TTDLLLKRVAHVPRLDYNLVSLTSLFDDGFET--KTLNKHELELERGGGEVVYF----PRCGNLYVQNGF---------RTHTEHACAAIAPGNAKAPSTPVDINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLG 928          
BLAST of mRNA_H-elongata_contig61797.13740.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 1.470e-43
Identity = 139/429 (32.40%), Postives = 202/429 (47.09%), Query Frame = 1
Query:   19 DSGAAEHMTQDPAGLEDYTPASAEDRVESTGGTLLPVAGYGHLPLLVDQGNGNFTYSTRQLTLKHVAHVPNLGQHILLSTKRRLQFFDAPMRVYPTTALIRPRRGGMPLFFRPLRPEN--GLLEIKVRRHVTAKSRLPKTPTATALAA-TQRGPR-----DIMKFHQVLGHLAEKITRNTARMAGVQLSRIWRPCVHCSESRVRRYAVPKSTENRADRHAGRLFIDLSSPFHEKSLGGNRFIMLCIDDFTRFKMVRFLKHKNDATDILRDIINDY---VAPEGLKIGVIRTDGGGKWHG-QFLSFLRKLGIKRDSTSPYTTQYNGVVERALGLLRDKTVA-------LLQGVMEGKSDRLWAEAMAYACDMWNRCTSSSLDSGNSPYELWYGRRPRFDNIPPFWTVGYLRRSTPGHKLAPRGASCIMLG 1248
            D+G A HMT   + ++D  P      V   G     VA  G L L+    +  F+     + LK+V +  NLG +I   +      FD      P         G M  F   +  +N  G+L       + +  RL +    T LAA T   P+     DI +FH +  H  E + R TA+  G +L      C  CS S+  R  + + T+ R+D+  GR+F+DL       S+GG  + M+  DDFTR   + FLK+++DA    R  +      + P  ++I  +R+D GG++ G +F S   +L IK++ T  Y+ QYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N    S+     SPYE+WYG  PR     PF    Y R   P  KL P+G SC  +G
Sbjct:  116 DTGTAFHMTDSLSCMKDLKPCHKS--VNGIGSVSCEVAFSGTLELVFVTADSEFS-----VELKNVLYSQNLGYNIFSPSAE----FDGESWNGPGGP-----DGVMTAFNGQVTFQNFDGML-------IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 517          
BLAST of mRNA_H-elongata_contig61797.13740.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 2.300e-43
Identity = 107/293 (36.52%), Postives = 151/293 (51.54%), Query Frame = 1
Query:  418 RLPKTPTATALAA-TQRGPR-----DIMKFHQVLGHLAEKITRNTARMAGVQLSRIWRPCVHCSESRVRRYAVPKSTENRADRHAGRLFIDLSSPFHEKSLGGNRFIMLCIDDFTRFKMVRFLKHKNDATDILRDIINDYVAPEGLK--IGVIRTDGGGKWHG-QFLSFLRKLGIKRDSTSPYTTQYNGVVERALGLLRDKTVA-------LLQGVMEGKSDRLWAEAMAYACDMWNRCTSSSLDSGNSPYELWYGRRPRFDNIPPFWTVGYLRRSTPGHKLAPRGASCIMLG 1248
            RL +    T LAA T   P+     DI +FH +  H  E + R TA+  G +L      C  CS S+  R  + + T+ R+D+  GR+F DL       S+GG  + ++  DDFTR   + FL++K+DA    R  +   V   G+   + ++R+D GGK+ G  F S   +L IK++ T  Y+ QYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N    S+     SPYE+WYG  PR     PF    Y R   P  KL P+G SC  +G
Sbjct:    8 RLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLAS-VRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRPS-KLLPKGESCFYVG 297          
BLAST of mRNA_H-elongata_contig61797.13740.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 2.180e-41
Identity = 136/421 (32.30%), Postives = 199/421 (47.27%), Query Frame = 1
Query:   40 MTQDPAGLEDYTPASAEDRVESTGGTLLPVAGYGHLPLLVDQGNGNFTYSTRQLTLKHVAHVPNLGQHILLSTKRRLQFFDAPMRVYPTTALIRPRRGGMPLFFRPLRPEN--GLLEIKVRRHVTAKSRLPKTPTATALAA-TQRGPR-----DIMKFHQVLGHLAEKITRNTARMAGVQLSRIWRPCVHCSESRVRRYAVPKSTENRADRHAGRLFIDLSSPFHEKSLGGNRFIMLCIDDFTRFKMVRFLKHKNDATDILRDIINDYVAPEGLK--IGVIRTDGGGKWHG-QFLSFLRKLGIKRDSTSPYTTQYNGVVERALGLLRDKTVA-------LLQGVMEGKSDRLWAEAMAYACDMWNRCTSSSLDSGNSPYELWYGRRPRFDNIPPFWTVGYLRRSTPGHKLAPRGASCIMLG 1248
            MT   + ++D  P      V   GG    VA  G L L+    +  F+     + LK+V + PNLG ++   +      FD          L  P  G M  F   +  +N  G+L       + +  RL +    T LAA T   P+     DI +FH +  H  E + R TA+  G +L      C  CS S+  R  + + T+ R+D+  GR+F+DL       S+GG  + M+  DDFTR   + FL++K+DA    R  +   V   G+   + ++R+D GG++ G +F S   +L IK++ T  Y+ QYNGV ER LGL+ +  +A       L   V   K+D+LWAEAM +AC+  N    S+      PYE+WYG  PR     PF    Y R   P  KL P+G SC  +G
Sbjct:    1 MTDSLSCMKDLKPCHKS--VNGIGGVSCEVAFSGTLELVFVTADSEFS-----VELKNVLYSPNLGYNLFSPSAE----FDGES----WNGLGGPD-GVMTAFNGQVTFQNFDGML-------IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLAS-VRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVG 395          
BLAST of mRNA_H-elongata_contig61797.13740.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 2.190e-41
Identity = 132/428 (30.84%), Postives = 201/428 (46.96%), Query Frame = 1
Query:   19 DSGAAEHMTQDPAGLEDYTPASAEDRVESTGGTLLPVAGYGHLPLLVDQGNGNFTYSTRQLTLKHVAHVPNLGQHILLSTKRRLQFFDAPMRVYPTTALIRPRRGGMPLFFRPLRPEN--GLLEIKVRRHVTAKSRLPKTPTATALAA-TQRGPR-----DIMKFHQVLGHLAEKITRNTARMAGVQLSRIWRPCVHCSESRVRRYAVPKSTENRADRHAGRLFIDLSSPFHEKSLGGNRFIMLCIDDFTRFKMVRFLKHKNDATDILRDIINDYVAPEGLK--IGVIRTDGGGKWHG-QFLSFLRKLGIKRDSTSPYTTQYNGVVERALGLLRDKTVA-------LLQGVMEGKSDRLWAEAMAYACDMWNRCTSSSLDSGNSPYELWYGRRPRFDNIPPFWTVGYLRRSTPGHKLAPRGASCIMLG 1248
            D+G A HMT   + ++D  P      V+  GG    +   G L L+    +  F      + L++V + PNLG ++   +      FD     Y     +    G M  F   +  +N  G+L       ++   RL      + LAA T   P+     D+ +FH +  H  E + R TA+  G++L+     C  CS S+  +  +   T+ R+D+  GR+F+DL       S+GG  + M+  DDFTR   + FLK K+DA    R  +   V  +G+   + ++R+D GG++ G +F S   +L IK++ T  Y+ QYNGV ER LGL+    +A       L   V   K+DRLWAEAM +AC+  N    S+     SPYE+W+G        P F    Y R   P  KL P+G +C  +G
Sbjct:  434 DTGTAFHMTDRLSCMKDLKPC--HKNVKGIGGVTCEIEFSGTLELVFVTADSQFP-----VELENVLYSPNLGYNLFSPSAE----FDGESWNY-----LGGPDGVMTAFNGHVTFQNLDGML-------ISPAYRLENNCVGSVLAALTPSNPKHESKMDVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLAS-VRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEASHARPYP-FLKPAYCRWQRPS-KLLPKGEACFYVG 835          
BLAST of mRNA_H-elongata_contig61797.13740.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 5.170e-41
Identity = 133/425 (31.29%), Postives = 192/425 (45.18%), Query Frame = 1
Query:   13 VNDSGAAEHMTQDPAGLEDYTPASAEDRVESTGGTLLPVAGYGHLPLLVDQGNGNFTYSTRQLTLKHVAHVPNLGQHILLSTKRRLQFFDAPMRVYPTTALIRPRRGGMPLFFRPLRPENGLLEIKVRRHVTAKSRLPKTPTATALAATQRGPRDIMKFHQVLGHLAEKITRNTARMAGVQLSRIWRPCVHCSESRVRRYAVPKSTENRADRHAGRLFIDLSSPFHEKSLGGNRFIMLCIDDFTRFKMVRFLKHKNDATDIL-RDIINDYVAPEGLKIGVIRTDGGGKW-HGQFLSFLRKLGIKRDSTSPYTTQYNGVVERALGLLRDKTVA-------LLQGVMEGKSDRLWAEAMAYACDMWNRCTSSSLDSGNSPYELWYGRRPRFDNIPPFWTVGYLRRST----PGHKLAPRGASCIMLG 1248
            V D+GA  HM  +  G   Y     + RV    G   P+ GYG + + +    G     T  L LK VAHVP L  +++  T     F D           +   RGG    + P R  N  +    R H         T  A   A     P +I  FH   GH  E + R TA+  G  L    R C+ CS ++     +P  T  RA +   R+F+DLS     +SL G  + ++  D +TR+  V FLKHK+DA +   R +  +        + V+R+D GG++  G+F    RK  IK++ T  ++ +YNGV ERALGL++D  +A       L  G     S   WAEA+A+AC+  N  +++S     SPYE+W+G  P     PP  T  +L+ +       HK  P+   C  LG
Sbjct:  396 VADTGATTHMFANSDGFVRYE--ECDRRVRVAAGETFPIVGYGDVTVTLSSRGG-----TTDLLLKRVAHVPRLDYNLVSLTSL---FDDGFQTKTLNKHELELERGGGESVYSP-RCGNLYVHNGCRTHTEHAY----TAIAPGDAKASSAPVEINDFHYAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKLIPNKTSTRAAKRLQRVFMDLSGKARVQSLVGKWYTLIVKDVYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYPS--FWAEAIAWACNALNCTSTTSNPEKKSPYEMWHGHPP-----PPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLG 798          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61797.13740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBA7_9PHAE3.290e-4532.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE4.560e-4532.24Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZQ8_9PHAE7.280e-4431.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE7.360e-4431.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE7.460e-4431.94Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JV76_9PHAE1.470e-4332.40Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KVR5_9PHAE2.300e-4336.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L3Y0_9PHAE2.180e-4132.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2M6_9PHAE2.190e-4130.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXF7_9PHAE5.170e-4131.29Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61797contigH-elongata_contig61797:115..1362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score129.8
Seed ortholog evalue3e-27
Seed eggNOG ortholog4530.OS08T0125300-01
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1248
Cds size1248
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930997.0590816-CDS-H-elongata_contig61797:114..13621622930997.0590816-CDS-H-elongata_contig61797:114..1362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61797 115..1362 -
1691679655.5127711-CDS-H-elongata_contig61797:114..13621691679655.5127711-CDS-H-elongata_contig61797:114..1362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61797 115..1362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61797.13740.1prot_H-elongata_contig61797.13740.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61797 115..1362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61797.13740.1

>prot_H-elongata_contig61797.13740.1 ID=prot_H-elongata_contig61797.13740.1|Name=mRNA_H-elongata_contig61797.13740.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=416bp
SEFRVNDSGAAEHMTQDPAGLEDYTPASAEDRVESTGGTLLPVAGYGHLP
LLVDQGNGNFTYSTRQLTLKHVAHVPNLGQHILLSTKRRLQFFDAPMRVY
PTTALIRPRRGGMPLFFRPLRPENGLLEIKVRRHVTAKSRLPKTPTATAL
AATQRGPRDIMKFHQVLGHLAEKITRNTARMAGVQLSRIWRPCVHCSESR
VRRYAVPKSTENRADRHAGRLFIDLSSPFHEKSLGGNRFIMLCIDDFTRF
KMVRFLKHKNDATDILRDIINDYVAPEGLKIGVIRTDGGGKWHGQFLSFL
RKLGIKRDSTSPYTTQYNGVVERALGLLRDKTVALLQGVMEGKSDRLWAE
AMAYACDMWNRCTSSSLDSGNSPYELWYGRRPRFDNIPPFWTVGYLRRST
PGHKLAPRGASCIMLG
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mRNA from alignment at H-elongata_contig61797:115..1362-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61797.13740.1 ID=mRNA_H-elongata_contig61797.13740.1|Name=mRNA_H-elongata_contig61797.13740.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1248bp|location=Sequence derived from alignment at H-elongata_contig61797:115..1362- (Himanthalia elongata Himel1 dioecious)
AGCGAATTCCGGGTGAACGATAGCGGTGCGGCAGAGCATATGACACAAGA CCCGGCGGGTCTAGAGGATTACACGCCGGCATCTGCGGAAGATCGAGTGG AGAGCACCGGCGGTACCCTCCTTCCGGTGGCGGGATATGGACATCTCCCC CTCCTGGTGGACCAAGGCAACGGTAACTTCACCTACTCGACGCGCCAGCT CACGCTAAAGCACGTCGCACATGTGCCGAATCTTGGACAGCATATTCTTC TCTCTACGAAACGGCGATTGCAGTTTTTCGACGCGCCGATGCGCGTCTAC CCAACGACTGCATTGATCCGCCCCCGGCGAGGGGGCATGCCACTCTTCTT CCGCCCACTTCGACCAGAAAACGGCCTTTTGGAGATCAAGGTGCGCCGCC ACGTCACTGCGAAAAGCCGCCTACCCAAAACCCCAACAGCAACAGCGCTC GCGGCGACGCAGCGCGGCCCGCGGGATATCATGAAGTTCCACCAGGTCCT GGGGCACTTGGCAGAGAAGATCACGCGCAACACGGCCCGTATGGCAGGCG TGCAGTTAAGCCGAATTTGGCGACCATGCGTACATTGCTCCGAATCTAGG GTGCGGCGATACGCCGTGCCTAAATCTACGGAGAATCGGGCTGATAGGCA CGCGGGACGGCTGTTTATTGATCTCTCAAGCCCCTTTCACGAGAAGTCTC TCGGAGGAAACAGATTCATCATGCTGTGCATTGACGACTTCACCCGCTTC AAAATGGTCCGTTTCCTCAAGCACAAGAACGACGCCACGGATATATTAAG GGACATAATCAACGACTACGTCGCGCCCGAGGGCCTCAAGATCGGCGTCA TCCGCACGGACGGTGGGGGGAAATGGCACGGCCAGTTCCTGTCTTTCCTG CGTAAGCTCGGAATAAAGCGCGACTCCACATCCCCATATACCACCCAATA CAATGGCGTCGTGGAGCGCGCTCTGGGGCTACTGCGCGACAAGACCGTGG CCCTGTTGCAAGGTGTAATGGAGGGTAAGAGCGACCGTCTATGGGCGGAA GCTATGGCGTACGCATGCGATATGTGGAACCGATGCACCTCCTCCTCCCT CGACAGCGGCAACTCGCCATATGAGCTTTGGTACGGCCGACGTCCGAGAT TCGACAACATCCCTCCGTTCTGGACCGTGGGATATCTACGACGGTCGACG CCGGGGCACAAACTAGCCCCCCGCGGGGCGAGCTGTATTATGCTCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig61797:115..1362-

>mRNA_H-elongata_contig61797.13740.1 ID=mRNA_H-elongata_contig61797.13740.1|Name=mRNA_H-elongata_contig61797.13740.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2496bp|location=Sequence derived from alignment at H-elongata_contig61797:115..1362- (Himanthalia elongata Himel1 dioecious)
AGCGAATTCCGGGTGAACGATAGCGGTGCGGCAGAGCATATGACACAAGA
CCCGGCGGGTCTAGAGGATTACACGCCGGCATCTGCGGAAGATCGAGTGG
AGAGCACCGGCGGTACCCTCCTTCCGGTGGCGGGATATGGACATCTCCCC
CTCCTGGTGGACCAAGGCAACGGTAACTTCACCTACTCGACGCGCCAGCT
CACGCTAAAGCACGTCGCACATGTGCCGAATCTTGGACAGCATATTCTTC
TCTCTACGAAACGGCGATTGCAGTTTTTCGACGCGCCGATGCGCGTCTAC
CCAACGACTGCATTGATCCGCCCCCGGCGAGGGGGCATGCCACTCTTCTT
CCGCCCACTTCGACCAGAAAACGGCCTTTTGGAGATCAAGGTGCGCCGCC
ACGTCACTGCGAAAAGCCGCCTACCCAAAACCCCAACAGCAACAGCGCTC
GCGGCGACGCAGCGCGGCCCGCGGGATATCATGAAGTTCCACCAGGTCCT
GGGGCACTTGGCAGAGAAGATCACGCGCAACACGGCCCGTATGGCAGGCG
TGCAGTTAAGCCGAATTTGGCGACCATGCGTACATTGCTCCGAATCTAGG
GTGCGGCGATACGCCGTGCCTAAATCTACGGAGAATCGGGCTGATAGGCA
CGCGGGACGGCTGTTTATTGATCTCTCAAGCCCCTTTCACGAGAAGTCTC
TCGGAGGAAACAGATTCATCATGCTGTGCATTGACGACTTCACCCGCTTC
AAAATGGTCCGTTTCCTCAAGCACAAGAACGACGCCACGGATATATTAAG
GGACATAATCAACGACTACGTCGCGCCCGAGGGCCTCAAGATCGGCGTCA
TCCGCACGGACGGTGGGGGGAAATGGCACGGCCAGTTCCTGTCTTTCCTG
CGTAAGCTCGGAATAAAGCGCGACTCCACATCCCCATATACCACCCAATA
CAATGGCGTCGTGGAGCGCGCTCTGGGGCTACTGCGCGACAAGACCGTGG
CCCTGTTGCAAGGTGTAATGGAGGGTAAGAGCGACCGTCTATGGGCGGAA
GCTATGGCGTACGCATGCGATATGTGGAACCGATGCACCTCCTCCTCCCT
CGACAGCGGCAACTCGCCATATGAGCTTTGGTACGGCCGACGTCCGAGAT
TCGACAACATCCCTCCGTTCTGGACCGTGGGATATCTACGACGGTCGACG
CCGGGGCACAAACTAGCCCCCCGCGGGGCGAGCTGTATTATGCTCGGGAG
CGAATTCCGGGTGAACGATAGCGGTGCGGCAGAGCATATGACACAAGACC
CGGCGGGTCTAGAGGATTACACGCCGGCATCTGCGGAAGATCGAGTGGAG
AGCACCGGCGGTACCCTCCTTCCGGTGGCGGGATATGGACATCTCCCCCT
CCTGGTGGACCAAGGCAACGGTAACTTCACCTACTCGACGCGCCAGCTCA
CGCTAAAGCACGTCGCACATGTGCCGAATCTTGGACAGCATATTCTTCTC
TCTACGAAACGGCGATTGCAGTTTTTCGACGCGCCGATGCGCGTCTACCC
AACGACTGCATTGATCCGCCCCCGGCGAGGGGGCATGCCACTCTTCTTCC
GCCCACTTCGACCAGAAAACGGCCTTTTGGAGATCAAGGTGCGCCGCCAC
GTCACTGCGAAAAGCCGCCTACCCAAAACCCCAACAGCAACAGCGCTCGC
GGCGACGCAGCGCGGCCCGCGGGATATCATGAAGTTCCACCAGGTCCTGG
GGCACTTGGCAGAGAAGATCACGCGCAACACGGCCCGTATGGCAGGCGTG
CAGTTAAGCCGAATTTGGCGACCATGCGTACATTGCTCCGAATCTAGGGT
GCGGCGATACGCCGTGCCTAAATCTACGGAGAATCGGGCTGATAGGCACG
CGGGACGGCTGTTTATTGATCTCTCAAGCCCCTTTCACGAGAAGTCTCTC
GGAGGAAACAGATTCATCATGCTGTGCATTGACGACTTCACCCGCTTCAA
AATGGTCCGTTTCCTCAAGCACAAGAACGACGCCACGGATATATTAAGGG
ACATAATCAACGACTACGTCGCGCCCGAGGGCCTCAAGATCGGCGTCATC
CGCACGGACGGTGGGGGGAAATGGCACGGCCAGTTCCTGTCTTTCCTGCG
TAAGCTCGGAATAAAGCGCGACTCCACATCCCCATATACCACCCAATACA
ATGGCGTCGTGGAGCGCGCTCTGGGGCTACTGCGCGACAAGACCGTGGCC
CTGTTGCAAGGTGTAATGGAGGGTAAGAGCGACCGTCTATGGGCGGAAGC
TATGGCGTACGCATGCGATATGTGGAACCGATGCACCTCCTCCTCCCTCG
ACAGCGGCAACTCGCCATATGAGCTTTGGTACGGCCGACGTCCGAGATTC
GACAACATCCCTCCGTTCTGGACCGTGGGATATCTACGACGGTCGACGCC
GGGGCACAAACTAGCCCCCCGCGGGGCGAGCTGTATTATGCTCGGG
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