mRNA_H-elongata_contig61792.13739.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61792.13739.1
Unique NamemRNA_H-elongata_contig61792.13739.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61792.13739.1 vs. uniprot
Match: D7G0G4_ECTSI (ATP binding / ATP-dependent helicase/ DNA binding / DNA-directed DNA polymerase/ helicase/ nucleic a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0G4_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 6.010e-66
Identity = 109/127 (85.83%), Postives = 116/127 (91.34%), Query Frame = 1
Query:   10 AVILEQAVEEVPIRNMAKRLGIERGTLQALQKEASVFCGMVVCFCRHLQWHELANVLYSFQERLSYSTKPELLPLVRLSRDLPPFRARALLEAGYPSPLELAGADCVHVAKVFMRCLPFRSAGWDES 390
            A++L+QAVEEVP+RNMA RLGIERG LQALQKEASVFCGMVVCFCRHLQWHELANVLYSFQ+RL YS KPELLPLVRLSRDLPPFRARALL+AGYPSPLELA AD   VA V +RC PFRSAGWDES
Sbjct: 1368 AMLLQQAVEEVPVRNMAGRLGIERGALQALQKEASVFCGMVVCFCRHLQWHELANVLYSFQDRLGYSAKPELLPLVRLSRDLPPFRARALLKAGYPSPLELATADASRVADVLLRCAPFRSAGWDES 1494          
BLAST of mRNA_H-elongata_contig61792.13739.1 vs. uniprot
Match: W7TPK8_9STRA (Dna polymerase theta n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPK8_9STRA)

HSP 1 Score: 101 bits (251), Expect = 3.500e-22
Identity = 52/125 (41.60%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    1 YLHAVILEQAVEEVPIRNMAKRLGIERGTLQALQKEASVFCGMVVCFCRHLQWHELANVLYSFQERLSYSTKPELLPLVRLSRDLP-PFRARALLEAGYPSPLELAGADCVHVAKVFMRCLPFRS 372
            ++++++L   ++EVP+  +    G+ RGTLQALQ EA +FCGM+V FC+HLQW  LA ++     RL +    +LLPL R+  +L    RARAL EAG+ +P ++A A    VA V +  +PF +
Sbjct: 1359 FVYSLVLHDMLQEVPLLQLETG-GVGRGTLQALQSEARIFCGMIVVFCKHLQWVTLARLIEGLSLRLEHRVGEDLLPLCRMGPELVHAARARALFEAGFQAPEDVAAARVEDVAAVLLTSMPFAA 1482          
BLAST of mRNA_H-elongata_contig61792.13739.1 vs. uniprot
Match: A0A182GK79_AEDAL (POLAc domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GK79_AEDAL)

HSP 1 Score: 91.7 bits (226), Expect = 7.980e-19
Identity = 51/138 (36.96%), Postives = 82/138 (59.42%), Query Frame = 1
Query:   10 AVILEQAVEEVPIRNMAKRLGIERGTLQALQKEASVFCGMVVCFCRHLQWHELANVLYSFQERLSYSTKPELLPLVRLSRDLPPFRARALLEAGYPSPLELAGADCVHVAKVFMRCLPF----RSAGWDESEVSWLVN 411
            A+ L++ V+E P+  +A++    RG LQ+LQ+ AS F G+V+ FC+ L W+ LA ++  F+ERL +  +P+LL L+R+S  L   RAR L  AG    L+LA +D + + ++   C+ F    R  G +E E    +N
Sbjct:  217 ALALKRLVDEEPLSAVAQQFQCSRGLLQSLQQVASTFAGIVMAFCKSLNWNLLAMIITQFRERLYFGVQPDLLDLMRIS-SLNGQRARLLFNAGVAGLLDLANSDPLRIEQILYNCISFETEQRRNGEEEFETRRRLN 353          
BLAST of mRNA_H-elongata_contig61792.13739.1 vs. uniprot
Match: UPI0011562735 (DNA polymerase theta n=1 Tax=Aedes albopictus TaxID=7160 RepID=UPI0011562735)

HSP 1 Score: 91.7 bits (226), Expect = 8.230e-19
Identity = 51/138 (36.96%), Postives = 82/138 (59.42%), Query Frame = 1
Query:   10 AVILEQAVEEVPIRNMAKRLGIERGTLQALQKEASVFCGMVVCFCRHLQWHELANVLYSFQERLSYSTKPELLPLVRLSRDLPPFRARALLEAGYPSPLELAGADCVHVAKVFMRCLPF----RSAGWDESEVSWLVN 411
            A+ L++ V+E P+  +A++    RG LQ+LQ+ AS F G+V+ FC+ L W+ LA ++  F+ERL +  +P+LL L+R+S  L   RAR L  AG    L+LA +D + + ++   C+ F    R  G +E E    +N
Sbjct: 1056 ALALKRLVDEEPLSAVAQQFQCSRGLLQSLQQVASTFAGIVMAFCKSLNWNLLAMIITQFRERLYFGVQPDLLDLMRIS-SLNGQRARLLFNAGVTGLLDLANSDPLRIEQILYNCISFETEQRRNGEEEFETRRRLN 1192          
BLAST of mRNA_H-elongata_contig61792.13739.1 vs. uniprot
Match: UPI0011568C8C (LOW QUALITY PROTEIN: uncharacterized protein LOC115264840 n=1 Tax=Aedes albopictus TaxID=7160 RepID=UPI0011568C8C)

HSP 1 Score: 91.7 bits (226), Expect = 8.270e-19
Identity = 51/138 (36.96%), Postives = 82/138 (59.42%), Query Frame = 1
Query:   10 AVILEQAVEEVPIRNMAKRLGIERGTLQALQKEASVFCGMVVCFCRHLQWHELANVLYSFQERLSYSTKPELLPLVRLSRDLPPFRARALLEAGYPSPLELAGADCVHVAKVFMRCLPF----RSAGWDESEVSWLVN 411
            A+ L++ V+E P+  +A++    RG LQ+LQ+ AS F G+V+ FC+ L W+ LA ++  F+ERL +  +P+LL L+R+S  L   RAR L  AG    L+LA +D + + ++   C+ F    R  G +E E    +N
Sbjct:  214 ALALKRLVDEEPLSAVAQQFQCSRGLLQSLQQVASTFAGIVMAFCKSLNWNLLAMIITQFRERLYFGVQPDLLDLMRIS-SLNGQRARLLFNAGITGLLDLANSDPLRIEQILYNCISFETEQRRNGEEEFETRRRLN 350          
BLAST of mRNA_H-elongata_contig61792.13739.1 vs. uniprot
Match: A0A6J0T9Q8_9SAUR (DNA-directed DNA polymerase n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0T9Q8_9SAUR)

HSP 1 Score: 90.5 bits (223), Expect = 2.100e-18
Identity = 48/133 (36.09%), Postives = 75/133 (56.39%), Query Frame = 1
Query:    1 YLHAVILEQAVEEVPIRNMAKRLGIERGTLQALQKEASVFCGMVVCFCRHLQWHELANVLYSFQERLSYSTKPELLPLVRLSRDLPPFRARALLEAGYPSPLELAGADCVHVAKVFMRCLPFRSA--GWDESE 393
            +  ++ L   + EVP++++AK+ G  RG LQ+LQ+ A+ + GM+  FC  L WH +  +L  FQ RL++  + EL  LVR++  L   RARAL  AG+ +  ++A      V + F    PF+S     DE E
Sbjct:  716 FFTSLALLDLINEVPLKDVAKKYGCNRGQLQSLQQSAATYAGMITIFCNRLGWHNMEQLLSQFQSRLTFGVQRELCDLVRITL-LNAQRARALYNAGFITVADVAKGTDAEVERAFRNAAPFKSTRKAVDEDE 847          
BLAST of mRNA_H-elongata_contig61792.13739.1 vs. uniprot
Match: UPI00141A3BCC (DNA polymerase theta n=1 Tax=Lacerta agilis TaxID=80427 RepID=UPI00141A3BCC)

HSP 1 Score: 90.5 bits (223), Expect = 2.100e-18
Identity = 50/132 (37.88%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    1 YLHAVILEQAVEEVPIRNMAKRLGIERGTLQALQKEASVFCGMVVCFCRHLQWHELANVLYSFQERLSYSTKPELLPLVRLSRDLPPFRARALLEAGYPSPLELAGADCVHVAKVFMRCLPFRSA-GWDESE 393
            +  ++ L   + EVPI ++AK+ G  RG LQ+LQ+ A+ + GM+  FC  L WH +  +L  FQ RL++  + EL  LVR+S  L    ARAL +AG+ +  ++A  +   V   F    PFRS    DE E
Sbjct:  664 FFTSLALLDLINEVPINDVAKKYGSNRGQLQSLQQSAATYAGMITIFCNRLGWHNMEQLLSQFQSRLTFGIQRELCDLVRISL-LNAQCARALYKAGFVTVADVAKGNIAEVENAFRNAAPFRSRKAVDEDE 794          
BLAST of mRNA_H-elongata_contig61792.13739.1 vs. uniprot
Match: A0A670JQ33_PODMU (DNA-directed DNA polymerase n=6 Tax=Lacertinae TaxID=162266 RepID=A0A670JQ33_PODMU)

HSP 1 Score: 90.5 bits (223), Expect = 2.100e-18
Identity = 50/132 (37.88%), Postives = 74/132 (56.06%), Query Frame = 1
Query:    1 YLHAVILEQAVEEVPIRNMAKRLGIERGTLQALQKEASVFCGMVVCFCRHLQWHELANVLYSFQERLSYSTKPELLPLVRLSRDLPPFRARALLEAGYPSPLELAGADCVHVAKVFMRCLPFRSA-GWDESE 393
            +  ++ L   + EVPI ++AK+ G  RG LQ+LQ+ A+ + GM+  FC  L WH +  +L  FQ RL++  + EL  LVR+S  L    ARAL +AG+ +  ++A  +   V   F    PFRS    DE E
Sbjct:  745 FFTSLALLDLINEVPINDVAKKYGSNRGQLQSLQQSAATYAGMITIFCNRLGWHNMEQLLSQFQSRLTFGIQRELCDLVRISL-LNAQCARALYKAGFVTVADVAKGNIAEVENAFRNAAPFRSRRAVDEDE 875          
BLAST of mRNA_H-elongata_contig61792.13739.1 vs. uniprot
Match: UPI000D6A41A1 (DNA polymerase theta n=1 Tax=Python bivittatus TaxID=176946 RepID=UPI000D6A41A1)

HSP 1 Score: 90.1 bits (222), Expect = 2.860e-18
Identity = 50/133 (37.59%), Postives = 74/133 (55.64%), Query Frame = 1
Query:    1 YLHAVILEQAVEEVPIRNMAKRLGIERGTLQALQKEASVFCGMVVCFCRHLQWHELANVLYSFQERLSYSTKPELLPLVRLSRDLPPFRARALLEAGYPSPLELAGADCVHVAKVFMRCLPFRSA--GWDESE 393
            +  ++ L   + EVP++++AK+ G  RG LQ+LQ+ A+ + GM+  FC  L WH +  +L  FQ RL++  + EL  LVR+S  L    ARAL  AG+ +  ++A      V  VF    PFRS     DE E
Sbjct:  676 FFTSLALLDLINEVPLKDVAKKYGCSRGQLQSLQQSAATYAGMITIFCNRLGWHNMEQLLSQFQSRLTFGIQRELCDLVRISL-LNAQCARALYNAGFITVADVAKGTLEEVESVFRNAAPFRSTRKAVDEDE 807          
BLAST of mRNA_H-elongata_contig61792.13739.1 vs. uniprot
Match: UPI00192F5C3C (DNA polymerase theta isoform X1 n=3 Tax=Crotalinae TaxID=8710 RepID=UPI00192F5C3C)

HSP 1 Score: 90.1 bits (222), Expect = 2.860e-18
Identity = 50/133 (37.59%), Postives = 74/133 (55.64%), Query Frame = 1
Query:    1 YLHAVILEQAVEEVPIRNMAKRLGIERGTLQALQKEASVFCGMVVCFCRHLQWHELANVLYSFQERLSYSTKPELLPLVRLSRDLPPFRARALLEAGYPSPLELAGADCVHVAKVFMRCLPFRSA--GWDESE 393
            +  ++ L   + EVP++++AK+ G  RG LQ+LQ+ A+ + GM+  FC  L WH +  +L  FQ RL++  + EL  LVR+S  L    ARAL  AG+ +  ++A      V  VF    PFRS     DE E
Sbjct:  759 FFTSLALLDLINEVPLKDVAKKYGCSRGQLQSLQQSAATYAGMITIFCNQLGWHNMEQLLSQFQSRLNFGIQRELCDLVRISL-LNAQCARALYNAGFITVADVAKGTLEEVENVFRNAAPFRSTRRAVDEDE 890          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61792.13739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0G4_ECTSI6.010e-6685.83ATP binding / ATP-dependent helicase/ DNA binding ... [more]
W7TPK8_9STRA3.500e-2241.60Dna polymerase theta n=2 Tax=Monodopsidaceae TaxID... [more]
A0A182GK79_AEDAL7.980e-1936.96POLAc domain-containing protein n=1 Tax=Aedes albo... [more]
UPI00115627358.230e-1936.96DNA polymerase theta n=1 Tax=Aedes albopictus TaxI... [more]
UPI0011568C8C8.270e-1936.96LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]
A0A6J0T9Q8_9SAUR2.100e-1836.09DNA-directed DNA polymerase n=1 Tax=Pogona vittice... [more]
UPI00141A3BCC2.100e-1837.88DNA polymerase theta n=1 Tax=Lacerta agilis TaxID=... [more]
A0A670JQ33_PODMU2.100e-1837.88DNA-directed DNA polymerase n=6 Tax=Lacertinae Tax... [more]
UPI000D6A41A12.860e-1837.59DNA polymerase theta n=1 Tax=Python bivittatus Tax... [more]
UPI00192F5C3C2.860e-1837.59DNA polymerase theta isoform X1 n=3 Tax=Crotalinae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61792contigH-elongata_contig61792:1585..2301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score227.3
Seed ortholog evalue4.5e-57
Seed eggNOG ortholog2880.D7G0G4
KEGG koko:K02349
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930996.994838-CDS-H-elongata_contig61792:1584..18091622930996.994838-CDS-H-elongata_contig61792:1584..1809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61792 1585..1809 -
1691679655.48524-CDS-H-elongata_contig61792:1584..18091691679655.48524-CDS-H-elongata_contig61792:1584..1809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61792 1585..1809 -
1622930997.0153127-CDS-H-elongata_contig61792:2109..23011622930997.0153127-CDS-H-elongata_contig61792:2109..2301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61792 2110..2301 -
1691679655.4982483-CDS-H-elongata_contig61792:2109..23011691679655.4982483-CDS-H-elongata_contig61792:2109..2301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61792 2110..2301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61792.13739.1prot_H-elongata_contig61792.13739.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61792 1585..2301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61792.13739.1

>prot_H-elongata_contig61792.13739.1 ID=prot_H-elongata_contig61792.13739.1|Name=mRNA_H-elongata_contig61792.13739.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
YLHAVILEQAVEEVPIRNMAKRLGIERGTLQALQKEASVFCGMVVCFCRH
LQWHELANVLYSFQERLSYSTKPELLPLVRLSRDLPPFRARALLEAGYPS
PLELAGADCVHVAKVFMRCLPFRSAGWDESEVSWLVNW*
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mRNA from alignment at H-elongata_contig61792:1585..2301-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61792.13739.1 ID=mRNA_H-elongata_contig61792.13739.1|Name=mRNA_H-elongata_contig61792.13739.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=717bp|location=Sequence derived from alignment at H-elongata_contig61792:1585..2301- (Himanthalia elongata Himel1 dioecious)
TATCTCCACGCTGTCATTCTCGAACAGGCTGTTGAAGAGGTGCCAATCCG GAATATGGCAAAACGTCTGGGCATCGAACGGGGCACCCTGCAAGCGCTAC AGAAAGAAGCTTCTGTGTTCTGCGGCATGGTTGTGTGCTTCTGCCGGCAC TTGCAGTGGCACGAGCTCGCCAACGTCTTATATTCCTTTCAGGTGAGTCA AGCCAAAACCAAAGGTGGCGTCGGGCGTAAGCATTATCCATTAAATATAT ATGAAAGCCGTACACCATAGCTAGAGGGGTAGCAGACCAATCAGTTGCAC CTATTAATACTTCTTAAATATTGACGCCGATGCACTAAAGAGTCGCATAC CGCAATAAAAACGCCTCCAGAGTTTGTTTTTTGGGGGAGGGAGATTGCTC AGACAGTATAGACTCTTCCCGACCACCGTCTCTCGCGTGCCTCGTTAACA TGGTCTGGCCGTCCACCGACCCGGCCTTTTTCTCTGATCCAGGAACGCCT GAGCTATAGTACAAAACCCGAGCTCCTTCCGCTTGTTCGACTGAGTCGCG ACCTGCCGCCGTTTCGCGCGCGGGCGCTACTGGAGGCGGGATACCCTAGC CCCTTGGAGCTGGCCGGTGCAGACTGCGTACACGTAGCTAAGGTGTTCAT GCGATGCTTGCCCTTCCGGAGCGCCGGTTGGGACGAGTCTGAGGTGAGTT GGCTCGTTAATTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig61792:1585..2301-

>mRNA_H-elongata_contig61792.13739.1 ID=mRNA_H-elongata_contig61792.13739.1|Name=mRNA_H-elongata_contig61792.13739.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig61792:1585..2301- (Himanthalia elongata Himel1 dioecious)
TATCTCCACGCTGTCATTCTCGAACAGGCTGTTGAAGAGGTGCCAATCCG
GAATATGGCAAAACGTCTGGGCATCGAACGGGGCACCCTGCAAGCGCTAC
AGAAAGAAGCTTCTGTGTTCTGCGGCATGGTTGTGTGCTTCTGCCGGCAC
TTGCAGTGGCACGAGCTCGCCAACGTCTTATATTCCTTTCAGTATCTCCA
CGCTGTCATTCTCGAACAGGCTGTTGAAGAGGTGCCAATCCGGAATATGG
CAAAACGTCTGGGCATCGAACGGGGCACCCTGCAAGCGCTACAGAAAGAA
GCTTCTGTGTTCTGCGGCATGGTTGTGTGCTTCTGCCGGCACTTGCAGTG
GCACGAGCTCGCCAACGTCTTATATTCCTTTCAGGAACGCCTGAGCTATA
GTACAAAACCCGAGCTCCTTCCGCTTGTTCGACTGAGTCGCGACCTGCCG
CCGTTTCGCGCGCGGGCGCTACTGGAGGCGGGATACCCTAGCCCCTTGGA
GCTGGCCGGTGCAGACTGCGTACACGTAGCTAAGGTGTTCATGCGATGCT
TGCCCTTCCGGAGCGCCGGTTGGGACGAGTCTGAGGTGAGTTGGCTCGTT
AATTGGTGAGAACGCCTGAGCTATAGTACAAAACCCGAGCTCCTTCCGCT
TGTTCGACTGAGTCGCGACCTGCCGCCGTTTCGCGCGCGGGCGCTACTGG
AGGCGGGATACCCTAGCCCCTTGGAGCTGGCCGGTGCAGACTGCGTACAC
GTAGCTAAGGTGTTCATGCGATGCTTGCCCTTCCGGAGCGCCGGTTGGGA
CGAGTCTGAGGTGAGTTGGCTCGTTAATTGGTGA
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