prot_H-elongata_contig117578.1373.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig117578.1373.1
Unique Name	prot_H-elongata_contig117578.1373.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	129

Homology

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BLAST of mRNA_H-elongata_contig117578.1373.1 vs. uniprot
Match: D7FXG5_ECTSI (Arginine/serine-rich splicing factor 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXG5_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 6.200e-77
Identity = 110/124 (88.71%), Postives = 122/124 (98.39%), Query Frame = 0

Query:    1 MGFAFIEFDDRRDADEAVSDMDGREFDGARIVVQPGRGHRPNGPKYATRRTEHRITIEGLDSHTSWQDLKDFGRKAGQVLFSDVFFRHGRRWGVVEYLSREDMKSAIRELDDTRLGGKYIRVRE 124
            MGFAFIEF+DRRDA++AV++MDGREFDGARIVVQPGRGHRPNGPK+ATRRTEHRIT+EGLDSHTSWQDLKDFGR+AGQVL+SDVFFR GRRWGVVEY+SR+DMK+AIR LDDTRLGGKYIRVRE
Sbjct:   36 MGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRDDMKAAIRTLDDTRLGGKYIRVRE 159

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BLAST of mRNA_H-elongata_contig117578.1373.1 vs. uniprot
Match: A0A1Y1ITP1_KLENI (RNA-binding protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ITP1_KLENI)

HSP 1 Score: 117 bits (292), Expect = 1.200e-29
Identity = 61/129 (47.29%), Postives = 84/129 (65.12%), Query Frame = 0

Query:    3 FAFIEFDDRRDADEAVSDMDGREFDGARIVVQPGRG--HRPNGPKYATR------RTEHRITIEGLDSHTSWQDLKDFGRKAGQVLFSDVFFRHGRRWGVVEYLSREDMKSAIRELDDTRLGGKYIRVR 123
            FAF+E+DD RDAD+A+  +DG  F G R+ V+  R     P GP+   +      R + R+ IEGL   TSWQDLKDFGR+AG V ++DVF   G+  GV+EY SRED+++A+R+LD  RL G  + +R
Sbjct:   57 FAFVEYDDYRDADDAIRKLDGYTFMGGRLQVEASRPPPRMPVGPRPGQQPGGLFNRQDKRVVIEGLSERTSWQDLKDFGREAGAVAYADVFRDRGKIQGVIEYQSREDVRNAVRKLDGVRLQGNTVYLR 185

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BLAST of mRNA_H-elongata_contig117578.1373.1 vs. uniprot
Match: UPI001F5D1779 (serine/arginine-rich-splicing factor SR34-like n=3 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D1779)

HSP 1 Score: 115 bits (287), Expect = 5.470e-29
Identity = 65/142 (45.77%), Postives = 85/142 (59.86%), Query Frame = 0

Query:    3 FAFIEFDDRRDADEAVSDMDGREFDGARIVVQPGRGHR-----------PNGPKYATRRTEHRITIEGLDSHTSWQDLKDFGRKAGQVLFSDVFFRHGRRWGVVEYLSREDMKSAIRELDDTRLGG----KYIRVREVRRSR 129
            FAF+EF+D RDAD+A+   DG +FDG R+ V+   G R            +G + A RR+++R+ + GL S  SWQDLKD  R+AG V FSDV+   G   G+VEY + EDMK AIR+LDD+         YIRVRE    R
Sbjct:   47 FAFVEFEDPRDADDAIYGRDGYDFDGQRLRVELAHGGRGASFDRSSSYGSSGRRGAARRSDYRVMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGAITGIVEYTNYEDMKHAIRKLDDSEFRNAFSRSYIRVREYNTKR 188

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BLAST of mRNA_H-elongata_contig117578.1373.1 vs. uniprot
Match: A0A3B6FNC0_WHEAT (Uncharacterized protein n=5 Tax=Triticum TaxID=4564 RepID=A0A3B6FNC0_WHEAT)

HSP 1 Score: 114 bits (284), Expect = 7.010e-29
Identity = 64/140 (45.71%), Postives = 83/140 (59.29%), Query Frame = 0

Query:    2 GFAFIEFDDRRDADEAVSDMDGREFDGARIVVQPGRGHRPNGPKY-------------ATRRTEHRITIEGLDSHTSWQDLKDFGRKAGQVLFSDVFFRHGRRWGVVEYLSREDMKSAIRELDDTRLGGK----YIRVRE 124
            G+AF+EF+D RDAD+A+   DG +FDG R+ V+   G R     Y              +RR+E R+ ++GL S  SWQDLKD  R+AG V FSDV+   G   GVV+Y + +DMK AIR+LDDT         YIRVRE
Sbjct:   46 GYAFVEFEDPRDADDAIYGRDGYDFDGYRLRVELAHGGRAQSYSYDRPSSFSNGRRGGVSRRSEFRVMVDGLPSSASWQDLKDHMRRAGDVCFSDVYREGGATVGVVDYTNYDDMKYAIRKLDDTEFRNAFSRAYIRVRE 185

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BLAST of mRNA_H-elongata_contig117578.1373.1 vs. uniprot
Match: A0A087HM59_ARAAL (Uncharacterized protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087HM59_ARAAL)

HSP 1 Score: 114 bits (286), Expect = 7.050e-29
Identity = 63/135 (46.67%), Postives = 85/135 (62.96%), Query Frame = 0

Query:    2 GFAFIEFDDRRDADEAVSDMDGREFDGARIVVQPGRGH--------RPNGPKYATRRTEHRITIEGLDSHTSWQDLKDFGRKAGQVLFSDVFFRHGRRWGVVEYLSREDMKSAIRELDDTRLGGK----YIRVRE 124
            G+AF+EF+D RDAD+A+   DG +FDG R+ V+   G         R +G +  +RR+++R+ + GL    SWQDLKD  RKAG V+FSDVF   G   GVV+Y + +DMK AIR+LDD+         YIRVRE
Sbjct:   47 GYAFVEFEDPRDADDAIRGRDGYDFDGCRLRVEIAHGRKGGSSSVDRYSGSRVPSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVVFSDVFRDRGGISGVVDYSNYDDMKYAIRKLDDSEFRNAFSRAYIRVRE 181

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BLAST of mRNA_H-elongata_contig117578.1373.1 vs. uniprot
Match: K3Z8N7_SETIT (Uncharacterized protein n=3 Tax=Paniceae TaxID=147428 RepID=K3Z8N7_SETIT)

HSP 1 Score: 114 bits (286), Expect = 1.060e-28
Identity = 68/145 (46.90%), Postives = 89/145 (61.38%), Query Frame = 0

Query:    2 GFAFIEFDDRRDADEAVSDMDGREFDGARIVVQ---PGRG--------HRPNGPKYATRRTEHRITIEGLDSHTSWQDLKDFGRKAGQVLFSDVFFRHGRRWGVVEYLSREDMKSAIRELDDTRLGG----KYIRVRE--VRRSR 129
            GFAF+EF+D RDA++A+   DG  FDG R+ V+    GRG        H   G + ATRR+++R+ + GL S  SWQDLKD  R+AG V FSDV+   G   G+ +Y + EDMK AIR+LD++         YIRVRE   RRSR
Sbjct:   46 GFAFVEFEDPRDAEDAIYGRDGYNFDGHRLRVELAHGGRGPSFDRSSSHNSVGRRGATRRSDYRVMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATIGIADYTNYEDMKHAIRKLDESEFRNAFSRSYIRVREYDARRSR 190

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BLAST of mRNA_H-elongata_contig117578.1373.1 vs. uniprot
Match: A0A2T7CCW0_9POAL (Uncharacterized protein n=5 Tax=Paniceae TaxID=147428 RepID=A0A2T7CCW0_9POAL)

HSP 1 Score: 114 bits (286), Expect = 1.150e-28
Identity = 61/140 (43.57%), Postives = 85/140 (60.71%), Query Frame = 0

Query:    2 GFAFIEFDDRRDADEAVSDMDGREFDGARIVVQPGRGHRPNGPKY-------------ATRRTEHRITIEGLDSHTSWQDLKDFGRKAGQVLFSDVFFRHGRRWGVVEYLSREDMKSAIRELDDTRL----GGKYIRVRE 124
            G+AF+EF+D RDA++A++  DG  FDG R+ V+P  G R N   +              +R +E+R+ + GL S  SWQDLKD  RKAG V FS+V+   G   G+V+Y + +DMK AI++LDDT      G  YIRV+E
Sbjct:   46 GYAFVEFEDPRDAEDAIAGRDGYNFDGHRLRVEPAHGGRGNASSHDRSGGFGGGARRGVSRHSEYRVLVSGLPSSASWQDLKDHMRKAGDVCFSEVYREGGGTIGIVDYTNYDDMKYAIKKLDDTEFRNAFGRAYIRVKE 185

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BLAST of mRNA_H-elongata_contig117578.1373.1 vs. uniprot
Match: A0A388LTQ4_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LTQ4_CHABU)

HSP 1 Score: 114 bits (285), Expect = 1.240e-28
Identity = 56/126 (44.44%), Postives = 84/126 (66.67%), Query Frame = 0

Query:    3 FAFIEFDDRRDADEAVSDMDGREFDGARIVVQPGRGHRPN----GPKYATRRTEHRITIEGLDSHTSWQDLKDFGRKAGQVLFSDVFFRHGRRWGVVEYLSREDMKSAIRELDDTRLGGKYIRVRE 124
            F F+EF++ R A++A+  +DG  F G+R++V+  R +R      G  Y  R  E+R+ I+ L  HT+WQDLKDFGR+AG V ++DV+  HGR  GV+EY +R+  ++A+R+L   RL G Y+ VRE
Sbjct:   24 FGFVEFENPRHAEDAIKKLDGYYFGGSRLLVEASRSNRGVSTNVGGMYGRR--ENRVIIDSLGPHTTWQDLKDFGREAGSVAYADVYMEHGRLRGVIEYSTRDGARTAVRKLHGVRLQGAYVSVRE 147

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BLAST of mRNA_H-elongata_contig117578.1373.1 vs. uniprot
Match: A0A453FB98_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FB98_AEGTS)

HSP 1 Score: 110 bits (276), Expect = 1.550e-28
Identity = 59/134 (44.03%), Postives = 79/134 (58.96%), Query Frame = 0

Query:    2 GFAFIEFDDRRDADEAVSDMDGREFDGARIVVQPGRGHRPNGPKY-------------ATRRTEHRITIEGLDSHTSWQDLKDFGRKAGQVLFSDVFFRHGRRWGVVEYLSREDMKSAIRELDDTRLGGKYIRV 122
            G+AF+EF+D RDAD+A+   DG +FDG R+ V+   G R     Y              +RR+E R+ ++GL S  SWQDLKD  R+AG V FSDV+   G   GVV+Y + +DMK AIR+LDDT     + R 
Sbjct:   18 GYAFVEFEDPRDADDAIYGRDGYDFDGYRLRVELAHGGRAQSYSYDRPSSFSNGRRGGVSRRSEFRVMVDGLPSSASWQDLKDHMRRAGDVCFSDVYREGGATVGVVDYTNYDDMKYAIRKLDDTEFRNAFSRA 151

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BLAST of mRNA_H-elongata_contig117578.1373.1 vs. uniprot
Match: K4ADU9_SETIT (Uncharacterized protein n=2 Tax=Setaria TaxID=4554 RepID=K4ADU9_SETIT)

HSP 1 Score: 114 bits (284), Expect = 1.560e-28
Identity = 61/141 (43.26%), Postives = 85/141 (60.28%), Query Frame = 0

Query:    2 GFAFIEFDDRRDADEAVSDMDGREFDGARIVVQPGRGHRPNGPKY--------------ATRRTEHRITIEGLDSHTSWQDLKDFGRKAGQVLFSDVFFRHGRRWGVVEYLSREDMKSAIRELDDTRL----GGKYIRVRE 124
            G+AF+EF+D RDA++A++  DG  FDG R+ V+P  G R N   +               +R +E+R+ + GL S  SWQDLKD  RKAG V FS+V+   G   G+V+Y + +DMK AI++LDDT      G  YIRV+E
Sbjct:   46 GYAFVEFEDPRDAEDAIAGRDGYNFDGHRLRVEPAHGGRGNASSHDRGSGGFGGGARRGVSRHSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAIKKLDDTEFRNAFGRAYIRVKE 186

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig117578.1373.1 vs. uniprot

BLAST of mRNA_H-elongata_contig117578.1373.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FXG5_ECTSI	6.200e-77	88.71	Arginine/serine-rich splicing factor 6 n=2 Tax=Ect...	[more]
A0A1Y1ITP1_KLENI	1.200e-29	47.29	RNA-binding protein n=1 Tax=Klebsormidium nitens T...	[more]
UPI001F5D1779	5.470e-29	45.77	serine/arginine-rich-splicing factor SR34-like n=3...	[more]
A0A3B6FNC0_WHEAT	7.010e-29	45.71	Uncharacterized protein n=5 Tax=Triticum TaxID=456...	[more]
A0A087HM59_ARAAL	7.050e-29	46.67	Uncharacterized protein n=1 Tax=Arabis alpina TaxI...	[more]
K3Z8N7_SETIT	1.060e-28	46.90	Uncharacterized protein n=3 Tax=Paniceae TaxID=147...	[more]
A0A2T7CCW0_9POAL	1.150e-28	43.57	Uncharacterized protein n=5 Tax=Paniceae TaxID=147...	[more]
A0A388LTQ4_CHABU	1.240e-28	44.44	Uncharacterized protein n=1 Tax=Chara braunii TaxI...	[more]
A0A453FB98_AEGTS	1.550e-28	44.03	Uncharacterized protein n=1 Tax=Aegilops tauschii ...	[more]
K4ADU9_SETIT	1.560e-28	43.26	Uncharacterized protein n=2 Tax=Setaria TaxID=4554...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 54..123 e-value: 8.2E-9 score: 45.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 55..121 e-value: 2.1E-9 score: 37.1 coord: 2..31 e-value: 2.9E-7 score: 30.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 53..127 score: 10.889
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..38 score: 10.053
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..53 e-value: 2.7E-10 score: 42.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 54..127 e-value: 2.9E-18 score: 67.5
None	No IPR available	PANTHER	PTHR23003:SF30	SERINE/ARGININE-RICH-SPLICING FACTOR 5A-RELATED	coord: 2..126
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 2..126
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 2..125

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig117578	contig	H-elongata_contig117578:217..1962 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig117578.1373.1	mRNA_H-elongata_contig117578.1373.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig117578 217..1983 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig117578.1373.1 ID=prot_H-elongata_contig117578.1373.1|Name=mRNA_H-elongata_contig117578.1373.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MGFAFIEFDDRRDADEAVSDMDGREFDGARIVVQPGRGHRPNGPKYATRR
TEHRITIEGLDSHTSWQDLKDFGRKAGQVLFSDVFFRHGRRWGVVEYLSR
EDMKSAIRELDDTRLGGKYIRVREVRRSR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf