mRNA_H-elongata_contig6175.13732.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: D8LKE0_ECTSI (Thioredoxin reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKE0_ECTSI) HSP 1 Score: 318 bits (815), Expect = 2.600e-105 Identity = 162/227 (71.37%), Postives = 188/227 (82.82%), Query Frame = 1
Query: 1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIV-GGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKRRVQRRGVLAGAALEDPRGDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAM-------AIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLA 657
++S+IIATGAEAIWLGAEGE++VKG+GVSTCATCDGAFYEGKE +V GGGDSAMEE+LFLTKFASKVT+VHRR GFR+S+IMLERV+D+PKI +KL+R VK+ V G L+GA LEDPRG + + LPCSGAFL+IGHKPMTKFL S+ ++ +ELDEDGF++HK HTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLA
Sbjct: 172 AKSIIIATGAEAIWLGAEGEEQVKGRGVSTCATCDGAFYEGKEVVVVGGGDSAMEEALFLTKFASKVTIVHRRDGFRSSRIMLERVKDNPKIHLKLHRTVKKWVSEGGDLSGAELEDPRGQD-----AVELLPCSGAFLAIGHKPMTKFLHSISSSXXXXXXXXXXXXXXSVVELDEDGFVVHKQHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLA 393
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: A0A367I9L2_9ARCH (Thioredoxin-disulfide reductase n=13 Tax=Archaea TaxID=2157 RepID=A0A367I9L2_9ARCH) HSP 1 Score: 265 bits (676), Expect = 1.760e-85 Identity = 140/223 (62.78%), Postives = 168/223 (75.34%), Query Frame = 1
Query: 1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIV-GGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKRRVQRRGVLAGAALEDPRGDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLAGNV 666
+ +LII TGAEAIWLG EGE+E KG+G+STCATCDGAF+ +E IV GGGDSAMEE+ FLT+FASKVTL+HRR FRASK+MLER ++HPKIE++ R VK+ + L+GA LEDPR GS E + C+GAF++IGHKP+T FL IE D+ G+I+HKDHTMTSV GVFA GDVVD RYRQAI+AAGMGCQAAIDCE+WL NV
Sbjct: 106 AHALIICTGAEAIWLGVEGEEEQKGRGISTCATCDGAFFRDEEIIVIGGGDSAMEEATFLTRFASKVTLIHRRDVFRASKVMLERAENHPKIEIRTFRQVKKWLSDEKGLSGAILEDPRD----GSTEE--IACTGAFIAIGHKPITGFLEG------------QIETDDSGYIIHKDHTMTSVSGVFAAGDVVDTRYRQAITAAGMGCQAAIDCEKWLEENV 310
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: A0A2E0PQV3_9EURY (Thioredoxin-disulfide reductase n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E0PQV3_9EURY) HSP 1 Score: 260 bits (665), Expect = 7.680e-84 Identity = 138/219 (63.01%), Postives = 166/219 (75.80%), Query Frame = 1
Query: 1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIV-GGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKRRVQRRGVLAGAALEDPRGDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWL 654
++SLII TGAEAIWLGA+GEDE KG+G+STCATCDGAF++ +E IV GGGDSAMEE+ FLT+FASKVT++HRR FRASK+M ER DHPKIE+K +R VK V L GA LEDPR K+E+ + C+GAF++IGHKP+T FL +E D+ G+IL ++HTMTSVEGVFA GDVVD RYRQAI+AAGMGCQAAID ERWL
Sbjct: 105 AQSLIICTGAEAIWLGADGEDEQKGRGISTCATCDGAFFKDEEIIVVGGGDSAMEEATFLTRFASKVTIIHRRDVFRASKVMYERAADHPKIEIKTHRQVKSWVAGENGLEGAILEDPRD-----GKIEE-ITCTGAFIAIGHKPITAFLEG------------QLETDDSGYILPQEHTMTSVEGVFAAGDVVDTRYRQAITAAGMGCQAAIDAERWL 305
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: A0A6V8DS78_9ARCH (Thioredoxin-disulfide reductase n=6 Tax=Archaea TaxID=2157 RepID=A0A6V8DS78_9ARCH) HSP 1 Score: 256 bits (654), Expect = 3.560e-82 Identity = 134/219 (61.19%), Postives = 162/219 (73.97%), Query Frame = 1
Query: 1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIV-GGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKRRVQRRGVLAGAALEDPRGDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWL 654
S+S+II TGAE+IWLG EGED KG+G+STCATCDGAF+ +E IV GGGDSAMEE+ FLT+FASKVT+VHRR FRASK+M ER +HPKIE+K +R VK + L GA LEDPR + + CSGAF++IGHKP+TKFL + +E D+ G+ILHK +TMTS+EGVFA GDVVD RYRQAI+AAGMGCQAAID E+WL
Sbjct: 105 SKSIIICTGAESIWLGVEGEDAQKGRGISTCATCDGAFFRDEEVIVVGGGDSAMEEATFLTRFASKVTIVHRRDVFRASKVMYERAVNHPKIEIKTHRTVKSWLSDDNGLTGAVLEDPRDGS------TETMNCSGAFIAIGHKPITKFLEN------------QVETDDSGYILHKRNTMTSIEGVFAAGDVVDTRYRQAITAAGMGCQAAIDAEKWL 305
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: A0A822X8T3_9ARCH (Thioredoxin-disulfide reductase n=17 Tax=Archaea TaxID=2157 RepID=A0A822X8T3_9ARCH) HSP 1 Score: 254 bits (648), Expect = 2.880e-81 Identity = 134/219 (61.19%), Postives = 165/219 (75.34%), Query Frame = 1
Query: 1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIV-GGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKRRVQRRGVLAGAALEDPRGDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWL 654
+ ++II TGAEAIWLGAEGE E KG+G+STCATCDGAF+ G E IV GGGDSAMEE+ FLT+FA KVT+VHRR FRASK+MLER ++HPKIE+K +R VK + L GA LED R +G ++E C+GAF++IGH+P+T+FL +E+D++G+ILH +HTMTSV GVFA GDVVD RYRQAI+AAGMGCQAAID ERWL
Sbjct: 105 AETVIICTGAEAIWLGAEGEQEQKGRGISTCATCDGAFFRGDEVIVVGGGDSAMEEATFLTRFAEKVTIVHRRDVFRASKVMLERAKNHPKIEIKTHRQVKEWLSDDKGLTGAVLEDSR--DGSLEEIE----CAGAFIAIGHRPITEFLGG------------QVEMDKEGYILHSEHTMTSVPGVFAAGDVVDTRYRQAITAAGMGCQAAIDAERWL 305
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: A0A7C7ZC26_9ARCH (Thioredoxin-disulfide reductase n=5 Tax=root TaxID=1 RepID=A0A7C7ZC26_9ARCH) HSP 1 Score: 254 bits (648), Expect = 2.880e-81 Identity = 132/219 (60.27%), Postives = 163/219 (74.43%), Query Frame = 1
Query: 1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIV-GGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKRRVQRRGVLAGAALEDPRGDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWL 654
+ S+II TGAEAIWLG EGE+ KG+G+STCATCDGAF+ +E IV GGGDSAMEE+ FLT+FASKVT++HRR GFRASK+M ER HPKI++ +R +KR + L+GA LEDPR GS+ E + C+GAF++IGHKPMT FL +E+DE G+ILH +HTMTS GVFA GDVVD+RYRQAI+AAGMGCQAA+D E+WL
Sbjct: 105 TESVIICTGAEAIWLGVEGEEAQKGRGISTCATCDGAFFRDQEVIVVGGGDSAMEEATFLTRFASKVTIIHRREGFRASKVMYERAVSHPKIDIMTHRHIKRWLSDENGLSGAILEDPRD----GSEQE--IACTGAFIAIGHKPMTGFLDG------------EVEMDESGYILHSEHTMTSTPGVFAAGDVVDKRYRQAITAAGMGCQAAMDVEKWL 305
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: A0A3A5V6W3_9ARCH (Thioredoxin-disulfide reductase n=12 Tax=Archaea TaxID=2157 RepID=A0A3A5V6W3_9ARCH) HSP 1 Score: 253 bits (647), Expect = 4.080e-81 Identity = 134/219 (61.19%), Postives = 166/219 (75.80%), Query Frame = 1
Query: 1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIV-GGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKRRVQRRGVLAGAALEDPRGDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWL 654
+ SLII TGAEAIWLGAEGE+E KG+G+STCATCDGAF+ +E IV GGGDSAMEE++FLT+FASKVT++HRR F+ASK+M ER +HPKIE+K R VK+ + L GA LEDPR GS+ E + CSGAF++IGHKP+T FL +E D +G+I+HK++TMT+V GVFA GDVVD+RYRQAI+AAGMGCQAAID E+WL
Sbjct: 105 AESLIICTGAEAIWLGAEGEEEQKGRGISTCATCDGAFFRDEEIIVVGGGDSAMEEAIFLTRFASKVTVIHRREVFKASKVMYERAAEHPKIEIKTFRQVKKWIAGDQGLIGAVLEDPRD----GSEEE--ISCSGAFIAIGHKPITSFLDD------------QLETDSEGYIVHKENTMTAVPGVFAAGDVVDKRYRQAITAAGMGCQAAIDAEKWL 305
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: A0A367I1M9_9ARCH (Thioredoxin-disulfide reductase n=4 Tax=Archaea TaxID=2157 RepID=A0A367I1M9_9ARCH) HSP 1 Score: 252 bits (644), Expect = 1.160e-80 Identity = 134/219 (61.19%), Postives = 161/219 (73.52%), Query Frame = 1
Query: 1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIV-GGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKRRVQRRGVLAGAALEDPRGDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWL 654
+++LII TGAEAIWLG EGED KG+G+STCATCDGAF+ +E IV GGGDSAMEE+ FLT+FASKVT+VHRR FRASK+M +R +HPKIE+K R VK+ + L GA LEDPR GS E + C+GAF++IGH P+T FL +E+DE G+ILH +HTMTSV GVFA GDVVD RYRQA++AAGMGCQAAID ERWL
Sbjct: 105 AQTLIICTGAEAIWLGVEGEDAQKGRGISTCATCDGAFFRDEEIIVVGGGDSAMEEATFLTRFASKVTIVHRRDVFRASKVMYDRAAEHPKIEIKTFRSVKQWLSDENGLTGALLEDPRD----GSTEE--IACNGAFIAIGHTPITSFLEG------------QVEIDESGYILHHEHTMTSVPGVFAAGDVVDTRYRQAVTAAGMGCQAAIDAERWL 305
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: A0A327HTY7_9EURY (Thioredoxin-disulfide reductase n=7 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A327HTY7_9EURY) HSP 1 Score: 252 bits (643), Expect = 1.650e-80 Identity = 133/220 (60.45%), Postives = 163/220 (74.09%), Query Frame = 1
Query: 1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIV-GGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKRRVQRRGVLAGAALEDPR-GDEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWL 654
+ S+II TGAEAIWLGAEGE+ KG+G+STCATCDGAF+ +E +V GGGDSAMEE+ FLT+FASKVT++HRR FRASK+M ER + HPKIE++ R VK L GA LEDPR GDE + + C+GAF++IGHKP+T++L +E D++G+ILHK +TMTSVEGVFA GDVVD RYRQAI+AAGMGCQAAID ERWL
Sbjct: 105 AESVIICTGAEAIWLGAEGEEAQKGRGISTCATCDGAFFRDEEVVVVGGGDSAMEEATFLTRFASKVTIIHRRDVFRASKVMYERAEAHPKIEIRPFRQVKSWTSDENGLTGAILEDPRHGDE-------EEISCTGAFIAIGHKPITQYLEG------------QVETDDEGYILHKSNTMTSVEGVFAAGDVVDTRYRQAITAAGMGCQAAIDAERWL 305
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Match: A0A835YK56_9STRA (Thioredoxin-disulfide reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK56_9STRA) HSP 1 Score: 251 bits (640), Expect = 2.060e-80 Identity = 140/233 (60.09%), Postives = 172/233 (73.82%), Query Frame = 1
Query: 1 SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAI-VGGGDSAMEESLFLTKFASKVTLVHRRTGFRASKIMLERVQDHPKIEMKLNRVVKR-------RVQRRGVLAGAALEDPRG----DEGCGSKVEDFLPCSGAFLSIGHKPMTKFLRSLDAAGTNRDEAMAIELDEDGFILHKDHTMTSVEGVFACGDVVDRRYRQAISAAGMGCQAAIDCERWLAGN 663
+ S+II+TGAEA WLGA+ E+ VKG GVSTCATCDGAFYEGKE + VGGGDSA+ E+LFLT+FASKVT++HRR GFRAS IMLER + HPKI + N+VVKR +Q G AGAA+ RG D G +E LP +GAFL++GHKP+TKFL+ +ELD +G+I+++ HTMTSVEGVFACGDVVD+RYRQAI+AAGMGCQAA+D E+WL G
Sbjct: 64 ANSVIISTGAEAQWLGAQNEELVKGAGVSTCATCDGAFYEGKEVLMVGGGDSAITEALFLTRFASKVTILHRREGFRASPIMLERTRTHPKIHILTNKVVKRWLVETPPPLQGEGGGAGAAVL--RGAEVTDVVTGEAME--LPAAGAFLAVGHKPVTKFLKG-----------SGVELDGEGYIVNRKHTMTSVEGVFACGDVVDKRYRQAITAAGMGCQAAMDAEKWLEGE 281 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6175.13732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6175.13732.1 >prot_H-elongata_contig6175.13732.1 ID=prot_H-elongata_contig6175.13732.1|Name=mRNA_H-elongata_contig6175.13732.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=224bp SRSLIIATGAEAIWLGAEGEDEVKGKGVSTCATCDGAFYEGKEAIVGGGDback to top mRNA from alignment at H-elongata_contig6175:78..1820+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6175.13732.1 ID=mRNA_H-elongata_contig6175.13732.1|Name=mRNA_H-elongata_contig6175.13732.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1743bp|location=Sequence derived from alignment at H-elongata_contig6175:78..1820+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6175:78..1820+ >mRNA_H-elongata_contig6175.13732.1 ID=mRNA_H-elongata_contig6175.13732.1|Name=mRNA_H-elongata_contig6175.13732.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1344bp|location=Sequence derived from alignment at H-elongata_contig6175:78..1820+ (Himanthalia elongata Himel1 dioecious)back to top |