mRNA_H-elongata_contig61717.13727.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61717.13727.1
Unique NamemRNA_H-elongata_contig61717.13727.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61717.13727.1 vs. uniprot
Match: D8LDM9_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM9_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.960e-22
Identity = 37/48 (77.08%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    4 TRCAVCDSTFGFLIKRRHHCRNCGRLVCSSCAETTWPKNMLPPTYVMD 147
            +RCAVCDSTFG+++KRRHHCRNCGRLVCS+CAE  WP++MLPPTY +D
Sbjct:   56 SRCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVD 103
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BLAST of mRNA_H-elongata_contig61717.13727.1 vs. uniprot
Match: A0A6H5KTC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.700e-21
Identity = 37/48 (77.08%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    4 TRCAVCDSTFGFLIKRRHHCRNCGRLVCSSCAETTWPKNMLPPTYVMD 147
            +RCAVCDSTFG+++KRRHHCRNCGRLVCS+CAE  WP++MLPPTY +D
Sbjct:  380 SRCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVD 427
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BLAST of mRNA_H-elongata_contig61717.13727.1 vs. uniprot
Match: D7FYF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF4_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.000e-10
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   10 CAVCDSTFG-FLIKRRHHCRNCGRLVCSSCAETTWPKNMLPPTY 138
            CA C S F   L +RRHHCRNCGRLVC++CA   WPK+MLP +Y
Sbjct:  521 CAECQSVFRPVLQRRRHHCRNCGRLVCTTCALRFWPKHMLPHSY 564
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BLAST of mRNA_H-elongata_contig61717.13727.1 vs. uniprot
Match: A0A6H5KUU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU5_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.560e-10
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   10 CAVCDSTFGFLIKRR-HHCRNCGRLVCSSCAETTWPKNMLPPTY 138
            CA C S+F  + +RR HHCRNCGRLVC++CA   WPK+MLP +Y
Sbjct:  591 CAECQSSFRPVFQRRKHHCRNCGRLVCTTCAWRFWPKHMLPHSY 634
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BLAST of mRNA_H-elongata_contig61717.13727.1 vs. uniprot
Match: A0A7S1CPH2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CPH2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.150e-9
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:   10 CAVCDSTFGFLIKRRHHCRNCGRLVCSSCAETTWPKNML 126
            C +C  TFG + + +HHCRNCG LVCS C+   WPK ML
Sbjct:  131 CKICKGTFGLIGRHKHHCRNCGALVCSKCSPARWPKKML 169
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BLAST of mRNA_H-elongata_contig61717.13727.1 vs. uniprot
Match: A0A1I8J253_9PLAT (Uncharacterized protein n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8J253_9PLAT)

HSP 1 Score: 57.0 bits (136), Expect = 3.800e-8
Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:    4 TRCAVCDSTFGFLIKRRHHCRNCGRLVCSSCAETTW--PKNMLPPTYVMD 147
            + C +C +TFG LI RRHHCRNCG LVCS C++ TW  P     P  V D
Sbjct:  465 SNCMLCSATFG-LISRRHHCRNCGFLVCSPCSQHTWVLPAQSDQPLRVCD 513
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BLAST of mRNA_H-elongata_contig61717.13727.1 vs. uniprot
Match: A0A267GG30_9PLAT (Uncharacterized protein n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267GG30_9PLAT)

HSP 1 Score: 54.7 bits (130), Expect = 1.690e-7
Identity = 26/50 (52.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:    4 TRCAVCDSTFGFLIKRRHHCRNCGRLVCSSCAETTW--PKNMLPPTYVMD 147
            + C +C +TF  LI RRHHCRNCG LVCS C++ TW  P     P  V D
Sbjct:  172 SNCMLCSATFS-LISRRHHCRNCGFLVCSPCSQHTWVLPAQSDQPLRVCD 220
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BLAST of mRNA_H-elongata_contig61717.13727.1 vs. uniprot
Match: K7HXV0_CAEJA (Uncharacterized protein n=2 Tax=Caenorhabditis japonica TaxID=281687 RepID=K7HXV0_CAEJA)

HSP 1 Score: 53.9 bits (128), Expect = 2.510e-7
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    4 TRCAVCDSTFGFLIKRRHHCRNCGRLVCSSCAETTW 111
            T+C VC  T   L++RRHHCRNCGR+VC SC+  T+
Sbjct:  151 TKCMVCGKTQFNLVQRRHHCRNCGRVVCGSCSSKTF 186
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BLAST of mRNA_H-elongata_contig61717.13727.1 vs. uniprot
Match: A0A6A7BVM8_9PEZI (FYVE-type domain-containing protein (Fragment) n=1 Tax=Piedraia hortae CBS 480.64 TaxID=1314780 RepID=A0A6A7BVM8_9PEZI)

HSP 1 Score: 51.2 bits (121), Expect = 2.600e-7
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 VTRCAVCDSTFGFLIKRRHHCRNCGRLVCSSCA 99
            V+ C VC S FGF   RRHHCR CGR+VCS+C+
Sbjct:   29 VSNCPVCGSAFGFFT-RRHHCRKCGRVVCSACS 60
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BLAST of mRNA_H-elongata_contig61717.13727.1 vs. uniprot
Match: A0A0M0JND3_9EUKA (FYVE-type domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JND3_9EUKA)

HSP 1 Score: 54.3 bits (129), Expect = 3.410e-7
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    4 TRCAVCDSTFGFLIKRRHHCRNCGRLVCSSCAET 105
            T C +CDS F  L++RRHHCR CGRLVC  C+++
Sbjct:  985 TNCTLCDSAFHLLLRRRHHCRLCGRLVCDPCSKS 1018
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61717.13727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDM9_ECTSI1.960e-2277.08FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KTC5_9PHAE3.700e-2177.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF4_ECTSI1.000e-1063.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUU5_9PHAE2.560e-1061.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1CPH2_9STRA1.150e-956.41Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1I8J253_9PLAT3.800e-854.00Uncharacterized protein n=3 Tax=Macrostomum lignan... [more]
A0A267GG30_9PLAT1.690e-752.00Uncharacterized protein n=2 Tax=Macrostomum lignan... [more]
K7HXV0_CAEJA2.510e-758.33Uncharacterized protein n=2 Tax=Caenorhabditis jap... [more]
A0A6A7BVM8_9PEZI2.600e-763.64FYVE-type domain-containing protein (Fragment) n=1... [more]
A0A0M0JND3_9EUKA3.410e-758.82FYVE-type domain-containing protein n=1 Tax=Chryso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61717contigH-elongata_contig61717:3153..3305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue1.7e-17
Seed eggNOG ortholog2880.D8LDM9
EggNOG free text desc.lipid binding
EggNOG OGsKOG1729@1,KOG1729@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionZinc finger, FYVE/PHD-type
Ec32 orthologEc-19_001200.1
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930995.5681107-CDS-H-elongata_contig61717:3152..33051622930995.5681107-CDS-H-elongata_contig61717:3152..3305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61717 3153..3305 +
1691679654.9121442-CDS-H-elongata_contig61717:3152..33051691679654.9121442-CDS-H-elongata_contig61717:3152..3305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61717 3153..3305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61717.13727.1prot_H-elongata_contig61717.13727.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61717 3153..3305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61717.13727.1

>prot_H-elongata_contig61717.13727.1 ID=prot_H-elongata_contig61717.13727.1|Name=mRNA_H-elongata_contig61717.13727.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
VTRCAVCDSTFGFLIKRRHHCRNCGRLVCSSCAETTWPKNMLPPTYVMDQ
*
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mRNA from alignment at H-elongata_contig61717:3153..3305+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61717.13727.1 ID=mRNA_H-elongata_contig61717.13727.1|Name=mRNA_H-elongata_contig61717.13727.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig61717:3153..3305+ (Himanthalia elongata Himel1 dioecious)
GTTACCAGGTGTGCTGTGTGCGATTCGACCTTCGGCTTCCTGATCAAGCG
TCGACACCACTGCCGCAACTGCGGTCGCCTGGTGTGCTCGAGCTGCGCGG
AGACGACCTGGCCCAAAAACATGTTGCCCCCAACCTACGTCATGGACCAG
TGA
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Coding sequence (CDS) from alignment at H-elongata_contig61717:3153..3305+

>mRNA_H-elongata_contig61717.13727.1 ID=mRNA_H-elongata_contig61717.13727.1|Name=mRNA_H-elongata_contig61717.13727.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig61717:3153..3305+ (Himanthalia elongata Himel1 dioecious)
GTTACCAGGTGTGCTGTGTGCGATTCGACCTTCGGCTTCCTGATCAAGCG
TCGACACCACTGCCGCAACTGCGGTCGCCTGGTGTGCTCGAGCTGCGCGG
AGACGACCTGGCCCAAAAACATGTTGCCCCCAACCTACGTCATGGACCAG
TGAGTTACCAGGTGTGCTGTGTGCGATTCGACCTTCGGCTTCCTGATCAA
GCGTCGACACCACTGCCGCAACTGCGGTCGCCTGGTGTGCTCGAGCTGCG
CGGAGACGACCTGGCCCAAAAACATGTTGCCCCCAACCTACGTCATGGAC
CAGTGA
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