mRNA_H-elongata_contig6171.13726.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6171.13726.1
Unique NamemRNA_H-elongata_contig6171.13726.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6171.13726.1 vs. uniprot
Match: D8LT40_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT40_ECTSI)

HSP 1 Score: 290 bits (742), Expect = 2.840e-80
Identity = 258/570 (45.26%), Postives = 309/570 (54.21%), Query Frame = 1 
Query:   16 LLRRRWIDEGKPVDARDNTQKTPLHHAAQWGQEETLDFLVECGANVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCYGNAPPQIFDDHVTEPVVDEIRLMVREVIR---------PSLALPAANSQTVLTPSKTRLSSSGDLASAPPMQSPGLYVMSGAKVDGEGVSAE-------AAQRVEQRRSTNLDSDRDRCNDEKRISDRQGCQTPHI-LGDFNKSQTLPT---NHSIVAQDHXXXXXXXXXLGQTTTNRHEPVGENRQEI-----AKEARSLVATSSAVVTSLEDSFGPKTRRTNARIFPRLSSVLPSDEELGHETT----------GSTVGSMGDDISEGVLTARSNIPRKDRLQPVAGSPVATCPGRRPQSAPPMRMTGDRRNMYATNSSLAGRRYPM------LANNGGAAVRGDAKKG----ARLEVTLLAYATMPGGKLDIFAAARDGQVSVLKKALEEGQMVDAKDNNGLTSLMWAARAGRLSTAKYLIYQRAKLELRNNATGFSALHFATYYCRSSVVRALLLAGADTQATDNYGRVPGARYQPSSYLS 1590
            +L RRW+DEGKPVDARDNTQKTPLHHAAQWGQEE LDFL+ECGA+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        QIFDDHVTEPV+DEIR +VREV++         P LA P+++++     +  R SS    AS  P Q+          V+   +S+E       A QRV+    T L            I  R         LG   KS  + +   N    +            LGQ    R   VG + +        K A +     +AV + L+   GP        + PRL   LP ++E   E            G+  G+ GD  +   +                 +   T PG RP SAP MR       + AT   L+GR Y            GG  +      G    A L   L+AYAT PGG LDIFAAARDGQVSVLK+AL +G+ VDA+D NGLT+LMWAARAGRLSTAKYL+ Q   L  R++ATGFS LHFA YYCRSSVVR L+LAGADTQATDN G+ PG R+Q  SYLS
Sbjct:   46 MLCRRWVDEGKPVDARDNTQKTPLHHAAQWGQEEALDFLIECGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQIFDDHVTEPVLDEIRFIVREVMKGPPLLPESGPDLARPSSDAKQHPGGNPHRQSSYSAAASPHPPQARKDSGTGQRPVESGSLSSEPRATVEGATQRVKAVPYTPLGDGG--------IPPRASSTALQTGLGLDRKSDVVSSPAGNGQNASSTPLLGSSGPEQLGQQEKGR---VGRDDRAWEPGVDGKNAGTTAVEGAAVPSPLDGPSGP------GSLAPRLRLKLPWEDETSPEQARTEGSERSPEGAAAGASGDGNASARMVGEEGT----------AATGLTYPGPRPLSAPSMRPMISASRLNATIPILSGRSYQSHNVVRGKGEGGGGTLGASGSLGRTGAATLAGRLVAYATRPGGSLDIFAAARDGQVSVLKQALTDGEEVDAQDENGLTALMWAARAGRLSTAKYLVSQGGSLTRRDDATGFSPLHFAAYYCRSSVVRVLVLAGADTQATDNAGKAPGERFQAVSYLS 588
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BLAST of mRNA_H-elongata_contig6171.13726.1 vs. uniprot
Match: A0A6H5KIU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIU7_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 3.090e-58
Identity = 239/558 (42.83%), Postives = 290/558 (51.97%), Query Frame = 1 
Query:   16 LLRRRWIDEGKPVDARDNTQKTPLHHAAQWGQEETLDFLVECGANVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCYGNAPPQIFDDHVTEPVVDE--------------------IRLMVREVIR---------PSLALPAANSQTVLTPSKTRLSSSGDLASAPPMQS-----PGLYVMSGAKVDGE-GVSAEAAQ-RVE------------QRRSTNLDSD--RDRCNDEKR--ISDRQGCQTPHILGDFNKSQTLPTNHSIVAQDHXXXXXXXXXLGQTTTNRHEPVGENRQEIAKEARSLVATSSAVVTSLEDSFGPKTRRTNARIFPRLSSVLPSDEELGHE---TTGST---VGSMGDDISEGVLTARSNIPRKDRLQPVAGSPVATCPGRRPQSAPPMRMTGDRRNMYATNSSLAGRRYPMLANNGGAAVRGDAKKGA-----RLEVTLLA-----YATMPGGKLDIFAAARDGQVSVLKKALEEGQMVDAKDNNGLTSLMWAARAGRLSTAKYLIYQRAKLELRNNATGFSALHFATYYCR 1485
            +L RRW+DEGKPVDARDNTQKTPLHHAAQWGQEE LDFL+ECGA+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        QIFDD VTEPV+DE                    IR +VREV++         P LA P+++++     +  R SS    A++ P Q+      G   + G +   E G + E A  RV+               ST L +    DR +D K   + + QG  +  +LG     Q       +   D                   EP G+ ++        ++A   A V S  D  GP        + PR    LP ++E   E   T GS     G+  D   +   +AR    +KD       +   T PG RP SAP MR       + AT   L+GR Y      GG    G    GA     R   T LA     YAT PGG LDIFAAARDGQVSVLK+AL +G+ VDA+D NGLT+LMWAARAGRLSTAKYL+ Q A L  R++ATGFS LHFA YYCR
Sbjct:   50 MLCRRWVDEGKPVDARDNTQKTPLHHAAQWGQEEALDFLIECGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQIFDDQVTEPVLDEGIRLLHDKGATTFDIDCLMQIRFIVREVMKGPPLLPEPGPDLARPSSDAKQHPVGNHRRQSSCSTAAASRPSQARKDSGTGQRPVEGGRFFSEHGATVEGATPRVKAVPYTPGGGIPPSASSTALKAGFGLDRKSDVKSSPVGNGQGASSTPLLGCSGVEQLEQQKGRVGGDDRAG----------------EPRGDGQK------AGVIAVEGAAVPSPLD--GPS---RPGGLAPRPRLKLPWEDEASPEPARTEGSERSPEGAAADAFGDENASARMEG-KKD-----TAATGLTYPGPRPLSAPSMRPMISASRLNATIPILSGRSYQGQNVVGGKGEGGGGTLGASGNLGRTGATTLAGRLVTYATRPGGSLDIFAAARDGQVSVLKQALTDGEEVDAQDENGLTALMWAARAGRLSTAKYLVSQGASLTRRDDATGFSPLHFAAYYCR 574
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BLAST of mRNA_H-elongata_contig6171.13726.1 vs. uniprot
Match: A0A836CHF3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.640e-29
Identity = 79/200 (39.50%), Postives = 108/200 (54.00%), Query Frame = 1 
Query: 1225 AYATMPGGKLDIFAAARDGQVSVLKKALEEGQMVDAKDNNGLTSLMWAARAGRLSTAKYLIYQRAKLELRNNATG------------------------------FSALHFATYYCRSSVVRALLLAGADTQATDNYGRVPGARYQPSSYLSYNAFHQRRAIRRFLSGDLKDGMDDKGKTLFPTHAPLEAYDEDHKPQYV 1734
            AY T P G +D+ AAARDGQV+VL+ A+ EG  VD  D  G+T+LMWAAR GR S+A++L+   A ++ R                                    +ALH A Y+CR ++VR L+  GAD    D  GR PG  +  ++ +      +RR I +FLSG+L+      G  +FPTHAPLEAYDE+HKP  +
Sbjct:  225 AYRTRPDGGIDLHAAARDGQVAVLRVAVTEGTFVDVFDEAGMTALMWAARCGRYSSAQFLLDAGAAIDCRVGPRSSXXXXXXXXXXXXXXXXXXXXXXXXXXXGCVTALHLACYHCRPAIVRLLVERGADVGIVDAEGRAPGRVFTVAALIRCGGLTERRQILQFLSGNLECDRGTHGP-VFPTHAPLEAYDEEHKPAII 423
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BLAST of mRNA_H-elongata_contig6171.13726.1 vs. uniprot
Match: W5N7Q8_LEPOC (Ankyrin repeat domain 33B n=1 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5N7Q8_LEPOC)

HSP 1 Score: 59.7 bits (143), Expect = 1.490e-5
Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = 1 
Query: 1234 TMPGGKLDIFAAARDGQVSVLKKALEEGQMVDA--KDNNGLTSLMWAARAGRLSTAKYLIYQRAKLEL-RNNATGFSALHFATYYCRSSVVRALLLAGADTQATDNYGRVPGARYQPSSYLSYNAFHQ 1608
            T    +  +  A   G V V+  AL +   VD   +D  G T+L+ AA+AG ++ + YL+     L+L R N  GF+AL  A    R+  VRAL+LAGAD +ATD+     G R  P  +  + A ++
Sbjct:  138 TDKNNRTGLMVACYQGYVDVVT-ALAQCPYVDVNWQDKEGNTALITAAQAGHITISNYLLNYFPGLDLERRNVHGFTALMKAAMQGRTECVRALMLAGADLEATDH-----GRRLTPREWALFTARYE 259
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BLAST of mRNA_H-elongata_contig6171.13726.1 vs. uniprot
Match: A0A382DBT3_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382DBT3_9ZZZZ)

HSP 1 Score: 55.8 bits (133), Expect = 3.570e-5
Identity = 33/99 (33.33%), Postives = 46/99 (46.46%), Query Frame = 1 
Query: 1255 DIFAAARDGQVSVLKKALEEGQMVDAKDNNGLTSLMWAARAGRLSTAKYLIYQRAKLELRNNATGFSALHFATYYCRSSVVRALLLAGADTQATDNYGR 1551
            DIF AA+ G    + + L  G  VD  D  G T+L WAA  G     + L+  +A +      +G + LH A  + R +  R LL+ GA     D  GR
Sbjct:   32 DIFEAAKLGDGQQVSECLSAGAKVDQPDTTGATALHWAALGGHDHIIRQLLNAKADVNAAEAGSGMTPLHGAARWNRLTSARLLLVNGAKVDVRDRLGR 130
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BLAST of mRNA_H-elongata_contig6171.13726.1 vs. uniprot
Match: A0A6A4ITQ9_APOLU (SAM domain-containing protein n=3 Tax=Mirini TaxID=236659 RepID=A0A6A4ITQ9_APOLU)

HSP 1 Score: 57.8 bits (138), Expect = 5.680e-5
Identity = 33/93 (35.48%), Postives = 52/93 (55.91%), Query Frame = 1 
Query: 1192 KKGARLEVTLLAYATMPGGKLDIFAAARDGQVSVLKKALEEGQMVDAKDNNGLTSLMWAARAGRLSTAKYLIYQRAKLELRNNATGFSALHFA 1470
            K+ AR+E TL+  +    G      AA+DG + +LK+A +     +AKD +G+T ++WAA  G+L   + L+ +   +E  N   G SALH A
Sbjct:   43 KRSARIEYTLMIRSGGMTGGTRFHQAAQDGNLDILKEATKRD--TNAKDEDGMTPVLWAASCGQLEALRLLVGRGGDIEKANYHFGQSALHLA 133
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BLAST of mRNA_H-elongata_contig6171.13726.1 vs. uniprot
Match: UPI00137812EF (LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 33B n=1 Tax=Thamnophis elegans TaxID=35005 RepID=UPI00137812EF)

HSP 1 Score: 57.8 bits (138), Expect = 6.120e-5
Identity = 46/152 (30.26%), Postives = 74/152 (48.68%), Query Frame = 1 
Query: 1144 YPMLANNGGAAVRGDAKKGARLEVTLLAYATMPGGKLDIFAAARDGQVSVLKKALEEGQM-VDAKDNNGLTSLMWAARAGRLSTAKYLIYQRAKLEL-RNNATGFSALHFATYYCRSSVVRALLLAGADTQATDNYGRVPGARYQPSSYLSY 1593
            +     N  A VR   ++G R E       T  G +  +  A   G V ++    +   M V+ +DN G T+L+ AA+AG ++  +YL+   + L++ + N  GF+AL  +    RS   RAL+LAGA+  ATD     PG  + P  +  +
Sbjct:  128 FRACCTNNAAVVRALIRQGLRDEDV---KETDRGERTGLIVACXQGYVDIVIALAQCPHMDVNWQDNEGNTALITAAQAGHITITQYLLNYYSDLDIEKRNTFGFTALMKSAMQGRSECARALILAGANINATD-----PGRGFTPLEWACF 271
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BLAST of mRNA_H-elongata_contig6171.13726.1 vs. uniprot
Match: V8NRT4_OPHHA (Ankyrin repeat domain-containing protein 33B (Fragment) n=1 Tax=Ophiophagus hannah TaxID=8665 RepID=V8NRT4_OPHHA)

HSP 1 Score: 57.4 bits (137), Expect = 6.130e-5
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 1 
Query: 1324 VDAKDNNGLTSLMWAARAGRLSTAKYLIYQRAKLEL-RNNATGFSALHFATYYCRSSVVRALLLAGADTQATDNYGRVPGARYQPSSYLSY 1593
            V+ +DN G T+L+ AA+AG ++  +YL+   + L++ + NA GF+AL  +    RS  VRAL+LAGA+  ATD     PG  + P  +  +
Sbjct:   54 VNWQDNEGNTALITAAQAGHINITQYLLNYYSGLDIEKRNAFGFTALMKSAMQGRSECVRALILAGANINATD-----PGRGFTPLEWACF 139
[Close]
BLAST of mRNA_H-elongata_contig6171.13726.1 vs. uniprot
Match: A0A8C6X1H9_NAJNA (Ankyrin repeat domain 33B n=6 Tax=Colubroidea TaxID=34989 RepID=A0A8C6X1H9_NAJNA)

HSP 1 Score: 57.4 bits (137), Expect = 7.980e-5
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 1 
Query: 1324 VDAKDNNGLTSLMWAARAGRLSTAKYLIYQRAKLEL-RNNATGFSALHFATYYCRSSVVRALLLAGADTQATDNYGRVPGARYQPSSYLSY 1593
            V+ +DN G T+L+ AA+AG ++  +YL+   + L++ + NA GF+AL  +    RS  VRAL+LAGA+  ATD     PG  + P  +  +
Sbjct:  178 VNWQDNEGNTALITAAQAGHINITQYLLNYYSGLDIEKRNAFGFTALMKSAMQGRSECVRALILAGANINATD-----PGRGFTPLEWACF 263
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6171.13726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LT40_ECTSI2.840e-8045.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIU7_9PHAE3.090e-5842.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CHF3_9STRA1.640e-2939.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W5N7Q8_LEPOC1.490e-535.16Ankyrin repeat domain 33B n=1 Tax=Lepisosteus ocul... [more]
A0A382DBT3_9ZZZZ3.570e-533.33Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A6A4ITQ9_APOLU5.680e-535.48SAM domain-containing protein n=3 Tax=Mirini TaxID... [more]
UPI00137812EF6.120e-530.26LOW QUALITY PROTEIN: ankyrin repeat domain-contain... [more]
V8NRT4_OPHHA6.130e-538.46Ankyrin repeat domain-containing protein 33B (Frag... [more]
A0A8C6X1H9_NAJNA7.980e-538.46Ankyrin repeat domain 33B n=6 Tax=Colubroidea TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6171contigH-elongata_contig6171:475..5162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score296.2
Seed ortholog evalue4.3e-77
Seed eggNOG ortholog2880.D8LT40
KEGG koko:K15436
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG0666@1,COG5273@1,KOG0509@2759,KOG4177@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-08_004050.1
Exons8
Model size2226
Cds size2226
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6171.13726.1prot_H-elongata_contig6171.13726.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6171 475..5162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930995.3461423-CDS-H-elongata_contig6171:474..6661622930995.3461423-CDS-H-elongata_contig6171:474..666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6171 475..666 +
1691679654.8002148-CDS-H-elongata_contig6171:474..6661691679654.8002148-CDS-H-elongata_contig6171:474..666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6171 475..666 +
1622930995.3663247-CDS-H-elongata_contig6171:1046..11811622930995.3663247-CDS-H-elongata_contig6171:1046..1181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6171 1047..1181 +
1691679654.8142464-CDS-H-elongata_contig6171:1046..11811691679654.8142464-CDS-H-elongata_contig6171:1046..1181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6171 1047..1181 +
1622930995.391693-CDS-H-elongata_contig6171:1512..24691622930995.391693-CDS-H-elongata_contig6171:1512..2469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6171 1513..2469 +
1691679654.8307254-CDS-H-elongata_contig6171:1512..24691691679654.8307254-CDS-H-elongata_contig6171:1512..2469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6171 1513..2469 +
1622930995.4141212-CDS-H-elongata_contig6171:2644..28441622930995.4141212-CDS-H-elongata_contig6171:2644..2844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6171 2645..2844 +
1691679654.8443449-CDS-H-elongata_contig6171:2644..28441691679654.8443449-CDS-H-elongata_contig6171:2644..2844Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6171 2645..2844 +
1622930995.4351652-CDS-H-elongata_contig6171:3233..33381622930995.4351652-CDS-H-elongata_contig6171:3233..3338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6171 3234..3338 +
1691679654.8556836-CDS-H-elongata_contig6171:3233..33381691679654.8556836-CDS-H-elongata_contig6171:3233..3338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6171 3234..3338 +
1622930995.459769-CDS-H-elongata_contig6171:3913..40141622930995.459769-CDS-H-elongata_contig6171:3913..4014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6171 3914..4014 +
1691679654.8715892-CDS-H-elongata_contig6171:3913..40141691679654.8715892-CDS-H-elongata_contig6171:3913..4014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6171 3914..4014 +
1622930995.47982-CDS-H-elongata_contig6171:4268..43501622930995.47982-CDS-H-elongata_contig6171:4268..4350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6171 4269..4350 +
1691679654.8892007-CDS-H-elongata_contig6171:4268..43501691679654.8892007-CDS-H-elongata_contig6171:4268..4350Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6171 4269..4350 +
1622930995.4969366-CDS-H-elongata_contig6171:4708..51621622930995.4969366-CDS-H-elongata_contig6171:4708..5162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6171 4709..5162 +
1691679654.900488-CDS-H-elongata_contig6171:4708..51621691679654.900488-CDS-H-elongata_contig6171:4708..5162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6171 4709..5162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6171.13726.1

>prot_H-elongata_contig6171.13726.1 ID=prot_H-elongata_contig6171.13726.1|Name=mRNA_H-elongata_contig6171.13726.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=742bp
MLCGGLLRRRWIDEGKPVDARDNTQKTPLHHAAQWGQEETLDFLVECGAN
VNTADFIEDTPLHFACYFGHANCARILIKAGANVNAHDCYGNAPPQIFDD
HVTEPVVDEIRLMVREVIRPSLALPAANSQTVLTPSKTRLSSSGDLASAP
PMQSPGLYVMSGAKVDGEGVSAEAAQRVEQRRSTNLDSDRDRCNDEKRIS
DRQGCQTPHILGDFNKSQTLPTNHSIVAQDHHQQQQQQQQLGQTTTNRHE
PVGENRQEIAKEARSLVATSSAVVTSLEDSFGPKTRRTNARIFPRLSSVL
PSDEELGHETTGSTVGSMGDDISEGVLTARSNIPRKDRLQPVAGSPVATC
PGRRPQSAPPMRMTGDRRNMYATNSSLAGRRYPMLANNGGAAVRGDAKKG
ARLEVTLLAYATMPGGKLDIFAAARDGQVSVLKKALEEGQMVDAKDNNGL
TSLMWAARAGRLSTAKYLIYQRAKLELRNNATGFSALHFATYYCRSSVVR
ALLLAGADTQATDNYGRVPGARYQPSSYLSYNAFHQRRAIRRFLSGDLKD
GMDDKGKTLFPTHAPLEAYDEDHKPQYVRLGSGDKITGSPDHVSDEYDER
TSATNKGGRKRSGAHPHASLRRSSRTTRKASTSMKTLNSKGPKNFSDDEE
TTRTDGAGMERRERNGAGARQGETGVFTYLRLLSLTKSLKSRNKFGYRDK
ADGADVGGSSGNGGVKSKSNEAGNGSVKYYLRKGSIQSLPFV
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mRNA from alignment at H-elongata_contig6171:475..5162+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6171.13726.1 ID=mRNA_H-elongata_contig6171.13726.1|Name=mRNA_H-elongata_contig6171.13726.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4688bp|location=Sequence derived from alignment at H-elongata_contig6171:475..5162+ (Himanthalia elongata Himel1 dioecious)
ATGCTGTGTGGTGGTCTCCTTCGCAGGAGATGGATCGACGAAGGGAAGCC
GGTGGACGCGCGGGACAATACCCAGAAGACGCCTTTACACCACGCGGCGC
AATGGGGCCAAGAAGAGACGCTGGACTTTCTCGTCGAGTGCGGTGCGAAC
GTGAATACGGCCGACTTCATCGAAGATACCCCGCTTCACTTTGTAAGGAC
CTGGCTCTCGCAAGATCACTCGTTAATTTTTCGGACGCGTTTCTTTGCTT
CGCAACCAGTGGTGATTTTGCTATCCGACGAGCGACAATCTTTGTTCGTA
ATGAATTAATCAATCGCTCCTGCTTAAGGCGCGTTCGTCCCGAAGTTCGC
CCTCTACGCCTGTATTGAGTTTAGCTTAACAGGGGGAAAATCATGCGCAC
CACACACTACATGGTATTTACCGTGGGTAAAAACGTCTGCCTCGTATGTA
CAATGCTTCGGGGTGGTTGGTAATAGTTCTCACGCTGCCTGCTTAAGCAT
CGCACGCCTCCATACTTTGGAAAGAGATTCATGAAGCATGATATAGGTAA
TCGCACGCTTCTTGCTGGACAGGCTTGTTACTTTGGCCACGCTAATTGCG
CGCGCATCCTGATCAAAGCCGGTGCGAACGTGAATGCCCATGACTGTTAC
GGCAACGCTCCACCTCAGATCTTCGACGACCATGTTACAGAGCCGGTAGT
CGACGAGGTGCGTCATCAATTTAGTAAAAAAATCGAGAGATGGGTTTTCT
CTAATAGGAACAGTTTTCGTCTTGGGCTTTATGAGCTTTCCCAAAACTTG
TTCGCGGAATGTGTTTGATCCCAACGAAAAACGCCCATTAGTTCATTGCT
AGTAGTAGACGTATGCTGATCTAAGGGATAGCTCCACGCGAAATGACCGT
GTGGTCTCATGGCAAGCGTTATGAGCCATATCCACCGTTTTGGAAGGAAC
GATCACTCTTGGCGTCTAGTTTTCTTGTTCGTCCACCATCCCAAACGCTC
AAGATATGCATGTCCACACCCTTGCGCCTGGTATACAGATCCGCCTTATG
GTGCGAGAGGTGATCAGGCCCTCTCTTGCTTTGCCGGCAGCCAACAGTCA
AACCGTGCTGACCCCTAGTAAAACCAGGCTTAGTAGCAGCGGAGACCTAG
CCTCGGCACCACCTATGCAGTCCCCAGGGCTGTACGTGATGAGTGGTGCA
AAGGTCGACGGTGAAGGTGTAAGCGCGGAGGCGGCTCAAAGAGTGGAGCA
AAGGCGATCCACAAATCTTGATAGCGACCGGGACAGATGTAATGACGAAA
AGCGTATAAGTGACCGACAAGGCTGCCAGACTCCGCATATTTTGGGTGAT
TTCAACAAGTCTCAAACGCTGCCCACGAATCATTCCATCGTCGCACAAGA
TCATCATCAGCAGCAGCAGCAGCAGCAGCAGCTTGGACAGACTACCACAA
ACCGTCACGAGCCCGTCGGCGAGAATCGACAAGAGATAGCCAAAGAGGCG
AGGTCATTAGTGGCGACCTCATCAGCGGTGGTGACGAGCCTAGAAGACTC
CTTCGGACCTAAGACTAGAAGAACCAACGCGCGCATCTTCCCCCGACTAT
CGTCTGTCTTGCCCTCGGACGAAGAACTCGGGCATGAAACCACAGGAAGC
ACCGTAGGCTCGATGGGTGATGACATTTCTGAAGGCGTTCTGACCGCGCG
GAGCAACATACCGAGAAAAGACAGGCTACAACCTGTAGCTGGAAGCCCGG
TAGCCACGTGTCCGGGACGTCGGCCGCAGTCTGCACCACCGATGCGCATG
ACAGGCGATAGGAGAAACATGTATGCAACAAATTCAAGTCTAGCGGGGCG
TAGGTACCCAATGTTAGCCAACAACGGTGGCGCGGCAGTCCGCGGTGACG
CAAAGAAGGGCGCCAGATTAGAGGTTACATTATTGGCGTATGCAACCATG
CCCGGCGGGAAGCTGGACATTTTCGCTGCTGCGCGAGATGGACAGGTAAG
GATGTCATGTGGTGTGTGCCGACTTCAACGAGCAGCTGTTGTACCGCAGG
AAAAGGAAATCTCTGCATTTTCAATGGAGACGAAATGGTTCGATGGGGAA
ATTGACTCCTCGAATGTTACACATTCTGCCGTGATGCGTGACCTTAATGC
TTACATGGAACAAAATACAGGTCAGCGTCTTGAAGAAAGCCCTCGAAGAA
GGGCAAATGGTTGACGCCAAGGACAATAACGGTCTCACTTCGCTCATGTG
GGCGGCACGCGCAGGCAGGCTCTCGACGGCAAAATATCTCATATACCAAA
GAGCAAAGCTGGAACTAAGAAATAATGCTACGGGGTTCTCCGCGCTTCAC
TTCGCCACCTACTACTGCCGGTAGGCGGGAAAGTGGAAAAATGTCTCTGA
GGTTAACCGGGCAAGAGGACCCTGTTAAATCGCGTACATATTCCCACTAG
CCCGGTAGGAAAAAAAAATAAATCAAACAACTATTACCTCGAATGCCTAA
GTCCGAGTCATTTTGCGCGCGACGATAACTGTGGCGAAGCTGTAGTGGTC
TTTCACAACTCCGCGCGACCTCTGATTGGGACGTTCACGGTTGCGGCTGG
CTGTCTGAGGTACTATGCGCTGACTTAAGTTTCCTCAACTTCAGTTGATG
TTTCTTTGACGAGGTAGGACAAAGTTTCGCAACAAGGAGCGATAATGATG
ACTCCTCTTCACAGGTTCATCATGTTTCCCCCGCGCCCTCGATACAACCT
CCTTTACAGGAGTTCCGTCGTGCGTGCCTTATTACTTGCTGGCGCGGACA
CACAAGCAACGGATAACTACGGACGAGTGCCGGGCGCAAGATATCAGCCT
TCGTCATACCTGAGGTGACACGAGAAAAACGTGGGACGCGTAATTTTGAT
GATAATTACTCCGTGGTCGTTCCGTTGGAACATTTGGCCACAAACACATC
GGGATCGAAACATTTCGCCTCAATTCGGGCGAGGAGCATAAATGAAACGC
AAGCAGAGTCAAGCTTTCCTGTAAGCCTTGTACCAGCAGATTTGGTAGAG
AACATTGTTTCTTGGTTCAAGTCATACGAAATCGATGCTAACGAAATCGA
TGCTACTTAACGCGGGACGGGAGGTGCTGAACCCGTCTCGCGATACTAAA
TTCTCAGGCGCGAACGGGGACAGGGGAAAAATATTTTTCCCTGTTCAGCT
GGCCACGAGCAGAAGGCAACCAAATCTGGTTGATCTTCTGTTAAATGTGT
GACCAACACAGAACAACACAATATAATTGTCGTGGTCGTTATGCCAAACG
AAAAGTCACAAGTCACGATTTCCTGTCAGGACAATTTATGATCATGTTTT
GGGGTCGGGATCTACGATAATGATTTGTACCTTTCACGCTCCCGGTCGCG
TGTCTTTGTTTATTTTTCGGATGTGGGGATCTAAACAAGTTACAACGCGT
TCCACCAGCGGCGGGCGATCAGGAGGTTTTTGTCGGGGGATTTGAAGGAC
GGGATGGACGACAAAGGGAAAACCTTGTTCCCTACGCATGGTAACTTAAT
TAGCTTTTAGAGGGCGGAAGAGTACCACTCACCTGATATATAGCTTTGGA
CGAGCGATGTTTCTCCCTGGTAAATGCAACCGCCATGCTCAGATGCTTTT
TTCTGTGATGTAACCGCCATGCTAGAATCGACGGTGGTGTGAAACTCTTG
ATGACCAAAATTGAACCATATCCCAAGAGTTTTGAAACGCATTATGGATG
TTTGTGCATGATGCATTCGTCGTGATTGCGCCACTGGTTGGCAGCCCCTT
TGGAGGCCTATGATGAGGATCACAAACCGCAGTACGTGCGACTGGGGAGC
GGCGACAAAATCACAGGGAGCCCAGAGTAAGATGGTCTCTAACTCTACCA
TCCGTGTCGCCGTTGCTTCCTCGACGTCTGTGCTGAGACTGTTGTTGTTG
TTGTTGGTCGCACTTTCCCCAATATATTGTTTAAACGTCGAGAGCTCTGA
GGGGTCCATGTTCTCAACGATTGTCCATATTGTACAGTGTGGACAATATT
CTTACACGTTTTTTTTTATTATTGGGAAGTGTCAGCGTGGCTCCAAGTAG
GGCAGCCCTAAGGCAAGGGTTAGATTGTTCGGGCGGGTTTTCTTCAGAGA
TAATGTCATCGGACACGTGGTCCAATTTTGTTCCTAACCATTTCCGTCTA
TCCCCTCGTGCCGCCACCGTCGCCATGAACGCAGTCACGTTTCGGACGAA
TACGACGAGCGTACATCCGCAACCAACAAGGGTGGCCGCAAACGATCCGG
GGCGCACCCGCACGCGTCCCTTCGCCGCTCCTCCCGAACAACCCGGAAGG
CTTCCACCAGCATGAAAACGTTGAACAGTAAAGGGCCCAAGAACTTTAGT
GACGATGAGGAAACGACCAGAACGGATGGGGCTGGGATGGAAAGAAGAGA
AAGGAACGGCGCAGGCGCTCGGCAGGGTGAAACTGGCGTCTTTACCTACC
TGCGGCTTTTATCGCTGACAAAATCCCTCAAAAGCCGGAATAAGTTTGGC
TATCGTGACAAAGCCGACGGGGCTGATGTTGGCGGTTCGTCCGGCAACGG
TGGGGTAAAGTCAAAGAGCAACGAGGCCGGGAACGGTAGCGTCAAATACT
ACCTGCGGAAGGGTTCGATTCAAAGTTTGCCCTTCGTT
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Coding sequence (CDS) from alignment at H-elongata_contig6171:475..5162+

>mRNA_H-elongata_contig6171.13726.1 ID=mRNA_H-elongata_contig6171.13726.1|Name=mRNA_H-elongata_contig6171.13726.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4452bp|location=Sequence derived from alignment at H-elongata_contig6171:475..5162+ (Himanthalia elongata Himel1 dioecious)
ATGCTGTGTGGTGGTCTCCTTCGCAGGAGATGGATCGACGAAGGGAAGCC
GGTGGACGCGCGGGACAATACCCAGAAGACGCCTTTACACCACGCGGCGC
AATGGGGCCAAGAAGAGACGCTGGACTTTCTCGTCGAGTGCGGTGCGAAC
GTGAATACGGCCGACTTCATCGAAGATACCCCGCTTCACTTTATGCTGTG
TGGTGGTCTCCTTCGCAGGAGATGGATCGACGAAGGGAAGCCGGTGGACG
CGCGGGACAATACCCAGAAGACGCCTTTACACCACGCGGCGCAATGGGGC
CAAGAAGAGACGCTGGACTTTCTCGTCGAGTGCGGTGCGAACGTGAATAC
GGCCGACTTCATCGAAGATACCCCGCTTCACTTTGCTTGTTACTTTGGCC
ACGCTAATTGCGCGCGCATCCTGATCAAAGCCGGTGCGAACGTGAATGCC
CATGACTGTTACGGCAACGCTCCACCTCAGATCTTCGACGACCATGTTAC
AGAGCCGGTAGTCGACGAGGCTTGTTACTTTGGCCACGCTAATTGCGCGC
GCATCCTGATCAAAGCCGGTGCGAACGTGAATGCCCATGACTGTTACGGC
AACGCTCCACCTCAGATCTTCGACGACCATGTTACAGAGCCGGTAGTCGA
CGAGATCCGCCTTATGGTGCGAGAGGTGATCAGGCCCTCTCTTGCTTTGC
CGGCAGCCAACAGTCAAACCGTGCTGACCCCTAGTAAAACCAGGCTTAGT
AGCAGCGGAGACCTAGCCTCGGCACCACCTATGCAGTCCCCAGGGCTGTA
CGTGATGAGTGGTGCAAAGGTCGACGGTGAAGGTGTAAGCGCGGAGGCGG
CTCAAAGAGTGGAGCAAAGGCGATCCACAAATCTTGATAGCGACCGGGAC
AGATGTAATGACGAAAAGCGTATAAGTGACCGACAAGGCTGCCAGACTCC
GCATATTTTGGGTGATTTCAACAAGTCTCAAACGCTGCCCACGAATCATT
CCATCGTCGCACAAGATCATCATCAGCAGCAGCAGCAGCAGCAGCAGCTT
GGACAGACTACCACAAACCGTCACGAGCCCGTCGGCGAGAATCGACAAGA
GATAGCCAAAGAGGCGAGGTCATTAGTGGCGACCTCATCAGCGGTGGTGA
CGAGCCTAGAAGACTCCTTCGGACCTAAGACTAGAAGAACCAACGCGCGC
ATCTTCCCCCGACTATCGTCTGTCTTGCCCTCGGACGAAGAACTCGGGCA
TGAAACCACAGGAAGCACCGTAGGCTCGATGGGTGATGACATTTCTGAAG
GCGTTCTGACCGCGCGGAGCAACATACCGAGAAAAGACAGGCTACAACCT
GTAGCTGGAAGCCCGGTAGCCACGTGTCCGGGACGTCGGCCGCAGTCTGC
ACCACCGATGCGCATGACAGGCGATAGGAGAAACATGTATGCAACAAATT
CAAGTCTAGCGGGGCGTAGGTACCCAATGTTAGCCAACAACGGTGGCGCG
GCAGTCCGCGGTGACGCAAAGAAGGGCGCCAGATTAGAGGTTACATTATT
GGCGTATGCAACCATGCCCGGCGGGAAGCTGGACATTTTCGCTGCTGCGC
GAGATGGACAGATCCGCCTTATGGTGCGAGAGGTGATCAGGCCCTCTCTT
GCTTTGCCGGCAGCCAACAGTCAAACCGTGCTGACCCCTAGTAAAACCAG
GCTTAGTAGCAGCGGAGACCTAGCCTCGGCACCACCTATGCAGTCCCCAG
GGCTGTACGTGATGAGTGGTGCAAAGGTCGACGGTGAAGGTGTAAGCGCG
GAGGCGGCTCAAAGAGTGGAGCAAAGGCGATCCACAAATCTTGATAGCGA
CCGGGACAGATGTAATGACGAAAAGCGTATAAGTGACCGACAAGGCTGCC
AGACTCCGCATATTTTGGGTGATTTCAACAAGTCTCAAACGCTGCCCACG
AATCATTCCATCGTCGCACAAGATCATCATCAGCAGCAGCAGCAGCAGCA
GCAGCTTGGACAGACTACCACAAACCGTCACGAGCCCGTCGGCGAGAATC
GACAAGAGATAGCCAAAGAGGCGAGGTCATTAGTGGCGACCTCATCAGCG
GTGGTGACGAGCCTAGAAGACTCCTTCGGACCTAAGACTAGAAGAACCAA
CGCGCGCATCTTCCCCCGACTATCGTCTGTCTTGCCCTCGGACGAAGAAC
TCGGGCATGAAACCACAGGAAGCACCGTAGGCTCGATGGGTGATGACATT
TCTGAAGGCGTTCTGACCGCGCGGAGCAACATACCGAGAAAAGACAGGCT
ACAACCTGTAGCTGGAAGCCCGGTAGCCACGTGTCCGGGACGTCGGCCGC
AGTCTGCACCACCGATGCGCATGACAGGCGATAGGAGAAACATGTATGCA
ACAAATTCAAGTCTAGCGGGGCGTAGGTACCCAATGTTAGCCAACAACGG
TGGCGCGGCAGTCCGCGGTGACGCAAAGAAGGGCGCCAGATTAGAGGTTA
CATTATTGGCGTATGCAACCATGCCCGGCGGGAAGCTGGACATTTTCGCT
GCTGCGCGAGATGGACAGGTCAGCGTCTTGAAGAAAGCCCTCGAAGAAGG
GCAAATGGTTGACGCCAAGGACAATAACGGTCTCACTTCGCTCATGTGGG
CGGCACGCGCAGGCAGGCTCTCGACGGCAAAATATCTCATATACCAAAGA
GCAAAGCTGGAACTAAGAAATAATGCTACGGGGTTCTCCGCGCTTCACTT
CGCCACCTACTACTGCCGGTCAGCGTCTTGAAGAAAGCCCTCGAAGAAGG
GCAAATGGTTGACGCCAAGGACAATAACGGTCTCACTTCGCTCATGTGGG
CGGCACGCGCAGGCAGGCTCTCGACGGCAAAATATCTCATATACCAAAGA
GCAAAGCTGGAACTAAGAAATAATGCTACGGGGTTCTCCGCGCTTCACTT
CGCCACCTACTACTGCCGGAGTTCCGTCGTGCGTGCCTTATTACTTGCTG
GCGCGGACACACAAGCAACGGATAACTACGGACGAGTGCCGGGCGCAAGA
TATCAGCCTTCGTCATACCTGAGGAGTTCCGTCGTGCGTGCCTTATTACT
TGCTGGCGCGGACACACAAGCAACGGATAACTACGGACGAGTGCCGGGCG
CAAGATATCAGCCTTCGTCATACCTGAGTTACAACGCGTTCCACCAGCGG
CGGGCGATCAGGAGGTTTTTGTCGGGGGATTTGAAGGACGGGATGGACGA
CAAAGGGAAAACCTTGTTCCCTACGCATGTTACAACGCGTTCCACCAGCG
GCGGGCGATCAGGAGGTTTTTGTCGGGGGATTTGAAGGACGGGATGGACG
ACAAAGGGAAAACCTTGTTCCCTACGCATGCCCCTTTGGAGGCCTATGAT
GAGGATCACAAACCGCAGTACGTGCGACTGGGGAGCGGCGACAAAATCAC
AGGGAGCCCAGACCCCTTTGGAGGCCTATGATGAGGATCACAAACCGCAG
TACGTGCGACTGGGGAGCGGCGACAAAATCACAGGGAGCCCAGATCACGT
TTCGGACGAATACGACGAGCGTACATCCGCAACCAACAAGGGTGGCCGCA
AACGATCCGGGGCGCACCCGCACGCGTCCCTTCGCCGCTCCTCCCGAACA
ACCCGGAAGGCTTCCACCAGCATGAAAACGTTGAACAGTAAAGGGCCCAA
GAACTTTAGTGACGATGAGGAAACGACCAGAACGGATGGGGCTGGGATGG
AAAGAAGAGAAAGGAACGGCGCAGGCGCTCGGCAGGGTGAAACTGGCGTC
TTTACCTACCTGCGGCTTTTATCGCTGACAAAATCCCTCAAAAGCCGGAA
TAAGTTTGGCTATCGTGACAAAGCCGACGGGGCTGATGTTGGCGGTTCGT
CCGGCAACGGTGGGGTAAAGTCAAAGAGCAACGAGGCCGGGAACGGTAGC
GTCAAATACTACCTGCGGAAGGGTTCGATTCAAAGTTTGCCCTTCGTTTC
ACGTTTCGGACGAATACGACGAGCGTACATCCGCAACCAACAAGGGTGGC
CGCAAACGATCCGGGGCGCACCCGCACGCGTCCCTTCGCCGCTCCTCCCG
AACAACCCGGAAGGCTTCCACCAGCATGAAAACGTTGAACAGTAAAGGGC
CCAAGAACTTTAGTGACGATGAGGAAACGACCAGAACGGATGGGGCTGGG
ATGGAAAGAAGAGAAAGGAACGGCGCAGGCGCTCGGCAGGGTGAAACTGG
CGTCTTTACCTACCTGCGGCTTTTATCGCTGACAAAATCCCTCAAAAGCC
GGAATAAGTTTGGCTATCGTGACAAAGCCGACGGGGCTGATGTTGGCGGT
TCGTCCGGCAACGGTGGGGTAAAGTCAAAGAGCAACGAGGCCGGGAACGG
TAGCGTCAAATACTACCTGCGGAAGGGTTCGATTCAAAGTTTGCCCTTCG
TT
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