mRNA_H-elongata_contig61709.13725.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61709.13725.1
Unique NamemRNA_H-elongata_contig61709.13725.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61709.13725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61709contigH-elongata_contig61709:486..2997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue4.2e-28
Seed eggNOG ortholog2880.D8LDX8
KEGG koko:K10398,ko:K14400
KEGG Pathwayko03015,map03015
GOsGO:0000226,GO:0000278,GO:0000281,GO:0000902,GO:0000910,GO:0000911,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005819,GO:0005856,GO:0005871,GO:0005874,GO:0005875,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0008574,GO:0009653,GO:0009826,GO:0009987,GO:0015630,GO:0016020,GO:0016043,GO:0016049,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0030865,GO:0031122,GO:0032502,GO:0032506,GO:0032989,GO:0032991,GO:0040007,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043622,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0048589,GO:0048856,GO:0048869,GO:0051301,GO:0060560,GO:0061640,GO:0071840,GO:0071944,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1902410,GO:1902850,GO:1903047,GO:1990939
EggNOG free text desc.ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsCOG5059@1,KOG0243@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons5
Model size670
Cds size666
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61709.13725.1prot_H-elongata_contig61709.13725.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61709 488..2997 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930995.2105463-CDS-H-elongata_contig61709:487..5621622930995.2105463-CDS-H-elongata_contig61709:487..562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61709 488..562 -
1691679654.7416677-CDS-H-elongata_contig61709:487..5621691679654.7416677-CDS-H-elongata_contig61709:487..562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61709 488..562 -
1622930995.2286227-CDS-H-elongata_contig61709:978..11191622930995.2286227-CDS-H-elongata_contig61709:978..1119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61709 979..1119 -
1691679654.754926-CDS-H-elongata_contig61709:978..11191691679654.754926-CDS-H-elongata_contig61709:978..1119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61709 979..1119 -
1622930995.2456036-CDS-H-elongata_contig61709:1281..14941622930995.2456036-CDS-H-elongata_contig61709:1281..1494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61709 1282..1494 -
1691679654.7648866-CDS-H-elongata_contig61709:1281..14941691679654.7648866-CDS-H-elongata_contig61709:1281..1494Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61709 1282..1494 -
1622930995.26396-CDS-H-elongata_contig61709:1841..19941622930995.26396-CDS-H-elongata_contig61709:1841..1994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61709 1842..1994 -
1691679654.7747576-CDS-H-elongata_contig61709:1841..19941691679654.7747576-CDS-H-elongata_contig61709:1841..1994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61709 1842..1994 -
1622930995.2797804-CDS-H-elongata_contig61709:2913..29971622930995.2797804-CDS-H-elongata_contig61709:2913..2997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61709 2914..2997 -
1691679654.784513-CDS-H-elongata_contig61709:2913..29971691679654.784513-CDS-H-elongata_contig61709:2913..2997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61709 2914..2997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61709.13725.1

>prot_H-elongata_contig61709.13725.1 ID=prot_H-elongata_contig61709.13725.1|Name=mRNA_H-elongata_contig61709.13725.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=222bp
LTKEKLTASWPLVEKLRNQLAATQQTLKATDEDLEATRAIVAEQTATERT
LLLEAEQTKSSLAIAEEDVEGLRAKVARQEEEAAVKRANASDFGESATAA
ATQVSDAVARFAGKHSEGCEGLRDGLVGAEAAAKAATRELAAASAHALGE
VNRKCNELARSVADGAESTGNLIRATASAFEKGLQEEKDATSAWHEEVDA
YLGALRHGLETHEQDLKGLSKE
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mRNA from alignment at H-elongata_contig61709:486..2997-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61709.13725.1 ID=mRNA_H-elongata_contig61709.13725.1|Name=mRNA_H-elongata_contig61709.13725.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2512bp|location=Sequence derived from alignment at H-elongata_contig61709:486..2997- (Himanthalia elongata Himel1 dioecious)
CTCACCAAGGAGAAACTGACGGCGTCCTGGCCCTTGGTGGAGAAACTTCG
CAACCAGCTAGCGGCCACTCAGCAAACCTTGAAGGTCAAATCGCGCTCTC
TTTTGGCCGTACCTTCTCATATATATTTATTTTTTTACCCGTCTCTCTCT
CTGTCTCTGTCAGTCTATATATATTAATAGCGTGCCGTTATTTGATCTAT
GTCTCTATTTTTATGCCATTTTACTTACATCCCGGGTTCTTAGAAAAAAG
TATATATATATATATATATATTTAGATTATATCCAAAGCAGTTTTTCTCG
TCCTTGACTTTTCCATTCCTTTTCTGAAAGACACTTGGTTTTTGAAGTTT
TTCTCCCTGGTCGAGGATAATGTCAAAATAATAGACAGTAAAATAGAGAA
AGTCAAGAACTTCCGGAGAAGAGCCGCCTATGCAGCCTGTGTAAATTAAC
ATGCTAGATTTAGTATGGAAATGGCGAAATCAAAATGGGAAACGCTGTTT
CCTGGATTATGAGACAGGAGTTGAGAAAGATTATGGCCTCAGAATCAGGG
GAAAGGTGTCCAGCAACCCTAATTGATATTTTCACCTGCTGAGCGCTACA
GGCTGTCTTGCTAATGTTTTTAGTTTTTAGTAGACCCAACCCGACCCGAC
CCTAACACTAACCCAAATCAAAGTTACAACTGCTGCTGACACAACCCGAC
TCTAACAATACATTTTGTTTTACATGACACTGCTGCACAGGTGTTAATCA
ATCAAATCCATCATATATTTCGGCCAATGAGATGGCAACATCTTTTTGGG
TGTCAGCCAATCTAATCCGTCAAATATTTCGCCATTTCAATGCTTCATTC
AGTACATTTTTACTTTTTACATGACCTACATTCTACATAGGCTACAGCCC
GAGAGCTCTTGGGAGGTGTTTCACACAAATCCTATATGGATATATAATGG
ATGTCTTGCCCGGGTGAGCTTCACGTTCGCATGTCGTCCCGTGCGGCAAG
CAGGCTACGGATGAAGACCTTGAGGCGACGAGGGCTATCGTGGCGGAGCA
AACGGCCACGGAACGCACGCTGCTTCTAGAGGCGGAACAGACCAAGAGCT
CCCTTGCCATCGCCGAGGAAGATGTGGAGGGACTTCGTGCCAAGGTTGCC
CGTCAGGTGAGACACATGCAGAGAAAGGCATGCAGCCAAAAACAAAAATA
GGGATACAAAGAGAGGTAGAGGTACAAGTGCAGATATGCATAGAGACCGA
GATCGAGAGATGGGAAGGAGGGGGGTAGGGAGGGATGAAGCAGAAAGGTC
GGGCAGGGCCGTAAATTTATTTATCCCCACTGAGGTGGTGGTGTGTGGAA
AATGCTGCTGTTGTGAGCTATAATGCTGTATTATTACATTACGCCGTAAT
ACTGTACTATACCAGGTACCGAGGGAGGCTTCTTCCCCCAACCCCCTCTC
CCCAGCTAAAACAAGCCTGCTGTAACACCCGGTGTTCTCTATCGCTCCCC
TAGGAGGAGGAGGCGGCCGTCAAGCGGGCGAATGCCTCGGACTTCGGGGA
GAGCGCAACCGCCGCAGCCACTCAGGTGTCCGACGCGGTCGCTCGCTTCG
CCGGCAAGCACTCGGAGGGCTGCGAGGGGCTGAGGGACGGCCTGGTCGGA
GCTGAGGCGGCGGCGAAGGCAGCCACGAGGGAGTTAGCGGCGGCTTCGGC
GCACGCGCTGGGAGAGGTACGTGGTTCTTTGTTACCGGTACTTGTACGTT
TTTTATAGTGCGTAAACAATCAGTTGTTTTTAGTTCTCTATTTTGGGGTT
GACAAAAAAAAGATACTGTGCTACAATGTACTGTAATTCACTACACTGTG
CTATACTGGTACTTGGTACTTGATACAGGTGAACCGAAAATGTAATGAAT
TGGCGCGGAGCGTCGCAGACGGAGCAGAGTCTACCGGTAACCTCATCCGC
GCGACCGCTTCGGCCTTCGAGAAGGGTCTGCAAGAGGAGAAAGATGCCAC
CAGCGCGTGGCATGAGGAGGTGAGGGTGGGAGGAGAGGTGGCGTCTGTTT
GGCGGCTCTGGACTGCAGACCGTGCTTCTTGTGTAGCGATATTGTGTGGA
TAGCTAGCAGTTAGCACGAGTATGAATCCGACGATGGTTGGTCCCCTGGA
TTTCACCTCTCATGGTGCAAATATAGTGTGGATGTTGGAAGGGTTGGAAT
GAATTCAGATCTGTTAATACTATTGGCCACGGCGTAGAGAGAAACAGAGT
ATTGTTGTTGCTGCTGCTACTCCTACTATTGATACGACTAATAAAAAGTC
TATAGTACAGTAATATTCCTAGAACAGTATTTTTGGGGAAAAATGGTAAA
AATATTGTTTGTCCTCCAAAATAGCTAGCGCTGATATCCTTGCCCCCCCC
CCCTCTCCCCCCATGGTTAATCCCTCCCCCATGAGGTCGATGCATATCTG
GGTGCTCTTCGTCACGGTCTTGAGACCCACGAGCAAGACTTAAAAGGGTT
GTCGAAAGAAGT
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Coding sequence (CDS) from alignment at H-elongata_contig61709:486..2997-

>mRNA_H-elongata_contig61709.13725.1 ID=mRNA_H-elongata_contig61709.13725.1|Name=mRNA_H-elongata_contig61709.13725.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1332bp|location=Sequence derived from alignment at H-elongata_contig61709:486..2997- (Himanthalia elongata Himel1 dioecious)
CTCACCAAGGAGAAACTGACGGCGTCCTGGCCCTTGGTGGAGAAACTTCG
CAACCAGCTAGCGGCCACTCAGCAAACCTTGAAGCTCACCAAGGAGAAAC
TGACGGCGTCCTGGCCCTTGGTGGAGAAACTTCGCAACCAGCTAGCGGCC
ACTCAGCAAACCTTGAAGGCTACGGATGAAGACCTTGAGGCGACGAGGGC
TATCGTGGCGGAGCAAACGGCCACGGAACGCACGCTGCTTCTAGAGGCGG
AACAGACCAAGAGCTCCCTTGCCATCGCCGAGGAAGATGTGGAGGGACTT
CGTGCCAAGGTTGCCCGTCAGGCTACGGATGAAGACCTTGAGGCGACGAG
GGCTATCGTGGCGGAGCAAACGGCCACGGAACGCACGCTGCTTCTAGAGG
CGGAACAGACCAAGAGCTCCCTTGCCATCGCCGAGGAAGATGTGGAGGGA
CTTCGTGCCAAGGTTGCCCGTCAGGAGGAGGAGGCGGCCGTCAAGCGGGC
GAATGCCTCGGACTTCGGGGAGAGCGCAACCGCCGCAGCCACTCAGGTGT
CCGACGCGGTCGCTCGCTTCGCCGGCAAGCACTCGGAGGGCTGCGAGGGG
CTGAGGGACGGCCTGGTCGGAGCTGAGGCGGCGGCGAAGGCAGCCACGAG
GGAGTTAGCGGCGGCTTCGGCGCACGCGCTGGGAGAGGAGGAGGAGGCGG
CCGTCAAGCGGGCGAATGCCTCGGACTTCGGGGAGAGCGCAACCGCCGCA
GCCACTCAGGTGTCCGACGCGGTCGCTCGCTTCGCCGGCAAGCACTCGGA
GGGCTGCGAGGGGCTGAGGGACGGCCTGGTCGGAGCTGAGGCGGCGGCGA
AGGCAGCCACGAGGGAGTTAGCGGCGGCTTCGGCGCACGCGCTGGGAGAG
GTGAACCGAAAATGTAATGAATTGGCGCGGAGCGTCGCAGACGGAGCAGA
GTCTACCGGTAACCTCATCCGCGCGACCGCTTCGGCCTTCGAGAAGGGTC
TGCAAGAGGAGAAAGATGCCACCAGCGCGTGGCATGAGGAGGTGAACCGA
AAATGTAATGAATTGGCGCGGAGCGTCGCAGACGGAGCAGAGTCTACCGG
TAACCTCATCCGCGCGACCGCTTCGGCCTTCGAGAAGGGTCTGCAAGAGG
AGAAAGATGCCACCAGCGCGTGGCATGAGGAGGTCGATGCATATCTGGGT
GCTCTTCGTCACGGTCTTGAGACCCACGAGCAAGACTTAAAAGGGTTGTC
GAAAGAAGTCGATGCATATCTGGGTGCTCTTCGTCACGGTCTTGAGACCC
ACGAGCAAGACTTAAAAGGGTTGTCGAAAGAA
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