mRNA_H-elongata_contig61704.13724.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61704.13724.1
Unique NamemRNA_H-elongata_contig61704.13724.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig61704.13724.1 vs. uniprot
Match: D8LT42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT42_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 2.010e-37
Identity = 89/158 (56.33%), Postives = 106/158 (67.09%), Query Frame = 1 
Query:    7 PSLRRAVERLLEDKARVEEALGAEGRRAEEERCRSRLWSNQVQELSLQAVKSAERCRELKAETLELRTELERTNDMLEQAKTLGAEAMARKEELRLAWMEAGLLKEELGAVRADCGRLVQLVSSTKEYSRFRRLWDDSGGLTIIENAIRGGPDFSIQS 480
            P L   V RL E     E ALG EG+RAEEE+ RS  W  +V +LSLQAV+SAERCR L AE  +L+ E+ER  + LE+AK   + A A    LRL  +E  LL EELGAVRADCGRLVQLVSSTKEY+ FRR+WDDSGGLT   N     P F+ ++
Sbjct:  133 PVLAAEVSRLREVTGNAESALGKEGKRAEEEKRRSEAWRARVDKLSLQAVQSAERCRTLSAENHQLKEEIERVREHLEEAKRRCSAAGATSNALRLKTIETELLSEELGAVRADCGRLVQLVSSTKEYAEFRRVWDDSGGLTRPYNGGAKTPFFAAKN 290
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BLAST of mRNA_H-elongata_contig61704.13724.1 vs. uniprot
Match: A0A6H5KFY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY4_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 2.910e-35
Identity = 109/257 (42.41%), Postives = 137/257 (53.31%), Query Frame = 1 
Query:    1 RIPSLRRAVERLLEDKARVEEALGAEGRRAEEERCRSRLWSNQVQELSLQA---------VKSAERCRELKAETLELRTELERTNDMLEQAKTLGAEAMARKEELRLAWMEAGLLKEELGAVRADCGRLVQLVSSTKEYSRFRRLWDDSGGLTIIENAIRGGPDFSIQSHRQAPTAAXXXXXXXSAGIAPAVKGVLCGVNKKKIGTNDQSMGATIGSAAAAAVA------------WDEAMRSEWSSPSEKIFSVAT 708
            R+P L   V RL E     E ALG EG+RAEEE+ RS  W  +V +LSLQA         V+SAE CR L AE  +L+ E++R  + LE+AK   + A A    LRL  +E  LL EELGAVRADC RLV+LVSSTKEY+ FRR+WDDSGGLT   N   GG   S  + +   + +       +A  +   +     V+  K       M  T       A A            W++AMRSEWSSPSEK+   AT
Sbjct:  104 RVPVLAAEVGRLREVTGNTESALGKEGKRAEEEQRRSEAWIARVDKLSLQARLGGRATGAVQSAEHCRTLSAENHQLKEEIKRVREHLEEAKRQCSAAGATSNALRLKTIEVELLSEELGAVRADCSRLVRLVSSTKEYAEFRRVWDDSGGLTRPYN---GGAKSSNFADKNGVSISHGVIIKATA--SQEEETTKSAVSFSKAAPFSGGMPHTXXXXXXPAAAERGTPITRSSDPWEQAMRSEWSSPSEKLIGAAT 355
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61704.13724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT42_ECTSI2.010e-3756.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFY4_9PHAE2.910e-3542.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61704contigH-elongata_contig61704:196..1907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size717
Cds size717
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61704.13724.1prot_H-elongata_contig61704.13724.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61704 196..1907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930995.1105406-CDS-H-elongata_contig61704:195..3451622930995.1105406-CDS-H-elongata_contig61704:195..345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61704 196..345 +
1691679654.6911356-CDS-H-elongata_contig61704:195..3451691679654.6911356-CDS-H-elongata_contig61704:195..345Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61704 196..345 +
1622930995.1243563-CDS-H-elongata_contig61704:660..8841622930995.1243563-CDS-H-elongata_contig61704:660..884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61704 661..884 +
1691679654.7023087-CDS-H-elongata_contig61704:660..8841691679654.7023087-CDS-H-elongata_contig61704:660..884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61704 661..884 +
1622930995.1388721-CDS-H-elongata_contig61704:1366..14661622930995.1388721-CDS-H-elongata_contig61704:1366..1466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61704 1367..1466 +
1691679654.72396-CDS-H-elongata_contig61704:1366..14661691679654.72396-CDS-H-elongata_contig61704:1366..1466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61704 1367..1466 +
1622930995.1541843-CDS-H-elongata_contig61704:1664..19071622930995.1541843-CDS-H-elongata_contig61704:1664..1907Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61704 1665..1907 +
1691679654.732492-CDS-H-elongata_contig61704:1664..19071691679654.732492-CDS-H-elongata_contig61704:1664..1907Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61704 1665..1907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61704.13724.1

>prot_H-elongata_contig61704.13724.1 ID=prot_H-elongata_contig61704.13724.1|Name=mRNA_H-elongata_contig61704.13724.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=239bp
RIPSLRRAVERLLEDKARVEEALGAEGRRAEEERCRSRLWSNQVQELSLQ
AVKSAERCRELKAETLELRTELERTNDMLEQAKTLGAEAMARKEELRLAW
MEAGLLKEELGAVRADCGRLVQLVSSTKEYSRFRRLWDDSGGLTIIENAI
RGGPDFSIQSHRQAPTAAAADDDDDSAGIAPAVKGVLCGVNKKKIGTNDQ
SMGATIGSAAAAAVAWDEAMRSEWSSPSEKIFSVATLTA
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mRNA from alignment at H-elongata_contig61704:196..1907+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61704.13724.1 ID=mRNA_H-elongata_contig61704.13724.1|Name=mRNA_H-elongata_contig61704.13724.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1712bp|location=Sequence derived from alignment at H-elongata_contig61704:196..1907+ (Himanthalia elongata Himel1 dioecious)
CGAATCCCTTCCCTCAGGCGCGCCGTGGAACGGCTCCTGGAGGACAAGGC
AAGGGTCGAAGAAGCCCTCGGGGCTGAGGGCAGGAGAGCCGAGGAAGAGC
GTTGTAGGTCAAGGCTGTGGAGTAACCAGGTCCAAGAGTTATCGCTCCAG
GTGAGACAACTCACATTCTAGAATATCTCCGCGTGCGCATCCGTGTTGAT
ATGGTCCACCCTACTACTGCTTGAACAATCTCGCCGCTCCGTCGAAACAT
GGCGTTTGGCTTGCAGGGAGAGCTTGTGTTATCTTTTTGTGTTTCCAGAA
ACCCATGCAATACCTTGGGGCTTGCGTTTGAAGCACGCGAATCGAAGGGC
TTTTAACGGTGCTTGCTGGATGATGTCTCGAAATTCTAACGCCATCACGG
TCGAAATTTATATCAAAGAGACGAGCTTAAATTTTTCCTTCCGAAATTTC
ACGCACATCGTACAGGCGGTCAAGAGTGCAGAGCGCTGTCGAGAGCTTAA
GGCCGAAACTCTGGAGCTAAGAACAGAGCTTGAGCGCACGAACGATATGC
TAGAGCAGGCAAAGACATTAGGGGCAGAGGCTATGGCGAGGAAGGAAGAG
CTCCGACTAGCGTGGATGGAGGCTGGCCTCCTCAAGGAGGAGTTGGGGGC
TGTGCGGGCGGACTGCGGCAGGCTCGTGCAGCTTGTCAGGTGATCGTACG
CAGATGAATGATAACATAAATTATACATCTGCGCCCATTCTTATCCCCCC
GTCCCTTTCTGCATACTTCATCTCGTCGTCCACAATATGGGGGACTTGTG
TCATTCATCGTTGTGCCGGTGGATCATGCGCCTTCTAAGGGTGACTCGAG
ACACGAGCTATTATTCACCTTCCGCATTTGCAAGCTTATCACTCGAAGCC
TTTTCTTCGGACGGCGCGAGCGTCGCCGTCTGGTGGTGGTGCGTTGAGGA
AGCGGGGCATACGAGTGCACATTTACCTCTGGGACGATATGTGTGTGAAG
GGATGTGGCAAAAGAAACAATCAAAGCACGAAGAAGATCTTACGTACGCG
CGGAACGATTTTTGCAAGCAAGAAATATGGTGGAGAGGCAGTATAGTTAG
AGGTCCCTCCTTGGTCACCTACTCGCTGATTCCTCGTTCGCGTTTGTTCT
CATTATTTCGACAAAAAAAAGCTCGACTAAGGAGTACTCTCGCTTCCGAC
GACTGTGGGACGACAGCGGAGGCCTAACCATAATTGAGAACGCAATCCGT
GGTGGCCCTGATTTTAGCATCGTCAGGGGCGGCAAATGCACCATCAACGA
TGCCCGCGGAGCGGGCAGCGATAGCCCCGCAGACGCTGGCTGTTCGTCGT
TATATACTGCGGGTGAAACACTCGGCGCCGGCCTTTCTCTGGACTCCTCG
AGATTTGTTCAGCCAGATGCCACGCTTCTTCTTCTTCCTACGCCACCGTC
ACCGCTTTGTCCCACACAGCAATCCCATCGGCAGGCACCCACTGCTGCTG
CTGCTGATGATGATGATGATAGTGCTGGTATTGCTCCTGCTGTTAAGGGC
GTCTTGTGCGGGGTAAATAAGAAGAAGATTGGTACCAACGACCAAAGCAT
GGGAGCAACGATAGGATCAGCGGCAGCGGCGGCGGTGGCCTGGGATGAGG
CCATGCGGTCCGAGTGGTCAAGCCCGTCGGAAAAGATTTTCAGCGTAGCT
ACATTGACGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig61704:196..1907+

>mRNA_H-elongata_contig61704.13724.1 ID=mRNA_H-elongata_contig61704.13724.1|Name=mRNA_H-elongata_contig61704.13724.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1434bp|location=Sequence derived from alignment at H-elongata_contig61704:196..1907+ (Himanthalia elongata Himel1 dioecious)
CGAATCCCTTCCCTCAGGCGCGCCGTGGAACGGCTCCTGGAGGACAAGGC
AAGGGTCGAAGAAGCCCTCGGGGCTGAGGGCAGGAGAGCCGAGGAAGAGC
GTTGTAGGTCAAGGCTGTGGAGTAACCAGGTCCAAGAGTTATCGCTCCAG
CGAATCCCTTCCCTCAGGCGCGCCGTGGAACGGCTCCTGGAGGACAAGGC
AAGGGTCGAAGAAGCCCTCGGGGCTGAGGGCAGGAGAGCCGAGGAAGAGC
GTTGTAGGTCAAGGCTGTGGAGTAACCAGGTCCAAGAGTTATCGCTCCAG
GCGGTCAAGAGTGCAGAGCGCTGTCGAGAGCTTAAGGCCGAAACTCTGGA
GCTAAGAACAGAGCTTGAGCGCACGAACGATATGCTAGAGCAGGCAAAGA
CATTAGGGGCAGAGGCTATGGCGAGGAAGGAAGAGCTCCGACTAGCGTGG
ATGGAGGCTGGCCTCCTCAAGGAGGAGTTGGGGGCTGTGCGGGCGGACTG
CGGCAGGCTCGTGCAGCTTGTCAGGCGGTCAAGAGTGCAGAGCGCTGTCG
AGAGCTTAAGGCCGAAACTCTGGAGCTAAGAACAGAGCTTGAGCGCACGA
ACGATATGCTAGAGCAGGCAAAGACATTAGGGGCAGAGGCTATGGCGAGG
AAGGAAGAGCTCCGACTAGCGTGGATGGAGGCTGGCCTCCTCAAGGAGGA
GTTGGGGGCTGTGCGGGCGGACTGCGGCAGGCTCGTGCAGCTTGTCAGCT
CGACTAAGGAGTACTCTCGCTTCCGACGACTGTGGGACGACAGCGGAGGC
CTAACCATAATTGAGAACGCAATCCGTGGTGGCCCTGATTTTAGCATCCT
CGACTAAGGAGTACTCTCGCTTCCGACGACTGTGGGACGACAGCGGAGGC
CTAACCATAATTGAGAACGCAATCCGTGGTGGCCCTGATTTTAGCATCCA
ATCCCATCGGCAGGCACCCACTGCTGCTGCTGCTGATGATGATGATGATA
GTGCTGGTATTGCTCCTGCTGTTAAGGGCGTCTTGTGCGGGGTAAATAAG
AAGAAGATTGGTACCAACGACCAAAGCATGGGAGCAACGATAGGATCAGC
GGCAGCGGCGGCGGTGGCCTGGGATGAGGCCATGCGGTCCGAGTGGTCAA
GCCCGTCGGAAAAGATTTTCAGCGTAGCTACATTGACGGCGCAATCCCAT
CGGCAGGCACCCACTGCTGCTGCTGCTGATGATGATGATGATAGTGCTGG
TATTGCTCCTGCTGTTAAGGGCGTCTTGTGCGGGGTAAATAAGAAGAAGA
TTGGTACCAACGACCAAAGCATGGGAGCAACGATAGGATCAGCGGCAGCG
GCGGCGGTGGCCTGGGATGAGGCCATGCGGTCCGAGTGGTCAAGCCCGTC
GGAAAAGATTTTCAGCGTAGCTACATTGACGGCG
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