prot_H-elongata_contig61692.13722.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61692.13722.1
Unique Nameprot_H-elongata_contig61692.13722.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length98
Homology
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Match: D8LFS1_ECTSI (DUF1279 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFS1_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.800e-29
Identity = 56/93 (60.22%), Postives = 74/93 (79.57%), Query Frame = 0
Query:    1 MRRLMAEYGPVAATFHISVFLTTMGSFYSLIDYG-LDLSLLVKDIPIIANNLPHPSAGKLALAWGLTSVTGPARALMTITLTPRVARLWWGRE 92
            ++  M  YG VAATFH+SVFL T+G+ YSLIDYG LD++ LVKD+PI+A+NLP   AG LA+A+G+TS  GP RA++T+T+TPR+AR   GRE
Sbjct:  131 LKHFMKRYGRVAATFHMSVFLGTLGTCYSLIDYGGLDIAELVKDVPILADNLPPAGAGNLAIAYGMTSAIGPPRAVLTVTVTPRIARFLAGRE 223          
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Match: A0A836CBX4_9STRA (DUF1279 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBX4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 9.560e-19
Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = 0
Query:    2 RRLMAEYGPVAATFHISVFLTTMGSFYSLIDYGLDLSLLVKDIPIIANNL--PHPSAGKLALAWGLTSVTGPARALMTITLTPRVARLW 88
            + +M EYGPVAAT H SVFLTT+G  Y+ ++ GLD++ L+  +P I         + G+LA+A+G T +TGPAR ++T+  TP+VA +W
Sbjct:  107 KHIMKEYGPVAATLHGSVFLTTLGGMYAALEKGLDINALLAQLPFIDGAALGSGGAGGQLAVAYGATLMTGPARTILTVVATPKVAHVW 195          
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Match: A0A835ZET6_9STRA (DUF1279 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZET6_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.040e-17
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = 0
Query:    3 RLMAEYGPVAATFHISVFLTTMGSFYSLIDYGLDLSLLVKDIPIIANNL--PHPSAGKLALAWGLTSVTGPARALMTITLTPRVARLW 88
            R   +YGPVA   H SV++ T+GS Y+ I  GLDL+ L+  IP++  +L   + +AG LA+A+G T +TGP RA++TIT TP  A +W
Sbjct:   13 RFARKYGPVAGVVHSSVYVCTLGSMYTAIASGLDLTSLLAQIPLMDQDLLTANAAAGHLAVAYGATMLTGPMRAVVTITATPAAADVW 100          
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Match: A0A7S0L5M9_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L5M9_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 4.090e-6
Identity = 30/94 (31.91%), Postives = 51/94 (54.26%), Query Frame = 0
Query:    1 MRRLMAEYGPVAATFHISVFLTTMGSFYSLIDYGL----DLSLLVKDIP---IIANNLPHPSAGKLALAWGLTSVTGPARALMTITLTPRVARL 87
            +R L+ EYG +    +  V+L+T+GS +  +D GL    D   +++ +    +   +  +P     A+AW L   T P R L+T+ +TPR+ARL
Sbjct:  107 LRALVKEYGALGIGVYAGVYLSTLGSLFLAVDCGLLPAGDALSMLRSVGADRLFDLDKLNPKTSNFAIAWILAKFTEPLRMLVTLAITPRLARL 200          
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Match: L1I877_GUITC (DUF1279 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I877_GUITC)

HSP 1 Score: 49.7 bits (117), Expect = 6.860e-5
Identity = 31/86 (36.05%), Postives = 46/86 (53.49%), Query Frame = 0
Query:    1 MRRLMAEYGPVAATFHISVFLTTMGSFYSLIDYGL-DLSLLVKDIPIIANNLPHPSAGKLALAWGLTSVTGPARALMTITLTPRVA 85
            ++ +MAEYG +AA FH+S  + T G FY+ +  G+ DL      +P          +G LA A+ L   T P R  +TI + PR+A
Sbjct:  136 LKDVMAEYGRLAAAFHLSGLVLTTGIFYTGLYMGVVDLEPWFDKLPSQLAEGVKNGSGNLAAAFVLAECTAPLRYGLTIAVVPRIA 221          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LFS1_ECTSI1.800e-2960.22DUF1279 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A836CBX4_9STRA9.560e-1946.07DUF1279 domain-containing protein n=1 Tax=Tribonem... [more]
A0A835ZET6_9STRA3.040e-1746.59DUF1279 domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S0L5M9_9EUKA4.090e-631.91Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
L1I877_GUITC6.860e-536.05DUF1279 domain-containing protein n=1 Tax=Guillard... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009688Domain of unknown function DUF1279PFAMPF06916DUF1279coord: 1..82
e-value: 1.4E-10
score: 41.6
NoneNo IPR availablePANTHERPTHR21377UNCHARACTERIZEDcoord: 1..87
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..89
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 90..98
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..71
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..31
NoneNo IPR availableTMHMMTMhelixcoord: 59..81
NoneNo IPR availableTMHMMTMhelixcoord: 9..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61692contigH-elongata_contig61692:2880..3173 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61692.13722.1mRNA_H-elongata_contig61692.13722.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61692 2871..3173 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61692.13722.1 ID=prot_H-elongata_contig61692.13722.1|Name=mRNA_H-elongata_contig61692.13722.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MRRLMAEYGPVAATFHISVFLTTMGSFYSLIDYGLDLSLLVKDIPIIANN
LPHPSAGKLALAWGLTSVTGPARALMTITLTPRVARLWWGRETKRKLK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009688DUF1279