mRNA_H-elongata_contig61692.13722.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Match: D8LFS1_ECTSI (DUF1279 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFS1_ECTSI) HSP 1 Score: 114 bits (284), Expect = 2.860e-29 Identity = 56/93 (60.22%), Postives = 74/93 (79.57%), Query Frame = 1
Query: 10 MRRLMAEYGPVAATFHISVFLTTMGSFYSLIDYG-LDLSLLVKDIPIIANNLPHPSAGKLALAWGLTSVTGPARALMTITLTPRVARLWWGRE 285
++ M YG VAATFH+SVFL T+G+ YSLIDYG LD++ LVKD+PI+A+NLP AG LA+A+G+TS GP RA++T+T+TPR+AR GRE
Sbjct: 131 LKHFMKRYGRVAATFHMSVFLGTLGTCYSLIDYGGLDIAELVKDVPILADNLPPAGAGNLAIAYGMTSAIGPPRAVLTVTVTPRIARFLAGRE 223
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Match: A0A836CBX4_9STRA (DUF1279 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBX4_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.510e-18 Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = 1
Query: 13 RRLMAEYGPVAATFHISVFLTTMGSFYSLIDYGLDLSLLVKDIPIIANNL--PHPSAGKLALAWGLTSVTGPARALMTITLTPRVARLW 273
+ +M EYGPVAAT H SVFLTT+G Y+ ++ GLD++ L+ +P I + G+LA+A+G T +TGPAR ++T+ TP+VA +W
Sbjct: 107 KHIMKEYGPVAATLHGSVFLTTLGGMYAALEKGLDINALLAQLPFIDGAALGSGGAGGQLAVAYGATLMTGPARTILTVVATPKVAHVW 195
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Match: A0A835ZET6_9STRA (DUF1279 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZET6_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 4.800e-17 Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 16 RLMAEYGPVAATFHISVFLTTMGSFYSLIDYGLDLSLLVKDIPIIANNL--PHPSAGKLALAWGLTSVTGPARALMTITLTPRVARLW 273
R +YGPVA H SV++ T+GS Y+ I GLDL+ L+ IP++ +L + +AG LA+A+G T +TGP RA++TIT TP A +W
Sbjct: 13 RFARKYGPVAGVVHSSVYVCTLGSMYTAIASGLDLTSLLAQIPLMDQDLLTANAAAGHLAVAYGATMLTGPMRAVVTITATPAAADVW 100
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Match: A0A7S0L5M9_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L5M9_9EUKA) HSP 1 Score: 53.9 bits (128), Expect = 1.680e-6 Identity = 31/96 (32.29%), Postives = 53/96 (55.21%), Query Frame = 1
Query: 4 AEMRRLMAEYGPVAATFHISVFLTTMGSFYSLIDYGL----DLSLLVKDIP---IIANNLPHPSAGKLALAWGLTSVTGPARALMTITLTPRVARL 270
A++R L+ EYG + + V+L+T+GS + +D GL D +++ + + + +P A+AW L T P R L+T+ +TPR+ARL
Sbjct: 105 AKLRALVKEYGALGIGVYAGVYLSTLGSLFLAVDCGLLPAGDALSMLRSVGADRLFDLDKLNPKTSNFAIAWILAKFTEPLRMLVTLAITPRLARL 200
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Match: A0A7S1XYK1_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYK1_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 5.850e-6 Identity = 37/113 (32.74%), Postives = 58/113 (51.33%), Query Frame = 1
Query: 10 MRRLMAEYGPVAATFHISVFLTTMGSFYSLIDYGL-DLSLLVKD------------------IP--IIANNLPH-----PSAGKLALAWGLTSVTGPARALMTITLTPRVARL 270
+R + YG VA + S++ T+G +S+ +G+ D ++V D +P I+A H P+A +ALAW T +T PARAL+T+ +TPR+ARL
Sbjct: 96 LREMWRRYGYVAIGTYFSIYAATLGGAFSVFHFGIVDPEVIVGDPRVAIEKLITFVQNQEEYVPQIILAEPYLHMLRDTPAATNIALAWIATKITEPARALITMGITPRLARL 208
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Match: L1I877_GUITC (DUF1279 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I877_GUITC) HSP 1 Score: 52.0 bits (123), Expect = 1.100e-5 Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 1
Query: 1 AAEMRRLMAEYGPVAATFHISVFLTTMGSFYSLIDYGL-DLSLLVKDIPIIANNLPHPSAGKLALAWGLTSVTGPARALMTITLTPRVA 264
AA+++ +MAEYG +AA FH+S + T G FY+ + G+ DL +P +G LA A+ L T P R +TI + PR+A
Sbjct: 133 AAKLKDVMAEYGRLAAAFHLSGLVLTTGIFYTGLYMGVVDLEPWFDKLPSQLAEGVKNGSGNLAAAFVLAECTAPLRYGLTIAVVPRIA 221 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig61692.13722.1 >prot_H-elongata_contig61692.13722.1 ID=prot_H-elongata_contig61692.13722.1|Name=mRNA_H-elongata_contig61692.13722.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp MRRLMAEYGPVAATFHISVFLTTMGSFYSLIDYGLDLSLLVKDIPIIANNback to top mRNA from alignment at H-elongata_contig61692:2871..3173+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig61692.13722.1 ID=mRNA_H-elongata_contig61692.13722.1|Name=mRNA_H-elongata_contig61692.13722.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig61692:2871..3173+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig61692:2871..3173+ >mRNA_H-elongata_contig61692.13722.1 ID=mRNA_H-elongata_contig61692.13722.1|Name=mRNA_H-elongata_contig61692.13722.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig61692:2871..3173+ (Himanthalia elongata Himel1 dioecious)back to top |