mRNA_H-elongata_contig61692.13722.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig61692.13722.1
Unique NamemRNA_H-elongata_contig61692.13722.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Match: D8LFS1_ECTSI (DUF1279 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFS1_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 2.860e-29
Identity = 56/93 (60.22%), Postives = 74/93 (79.57%), Query Frame = 1
Query:   10 MRRLMAEYGPVAATFHISVFLTTMGSFYSLIDYG-LDLSLLVKDIPIIANNLPHPSAGKLALAWGLTSVTGPARALMTITLTPRVARLWWGRE 285
            ++  M  YG VAATFH+SVFL T+G+ YSLIDYG LD++ LVKD+PI+A+NLP   AG LA+A+G+TS  GP RA++T+T+TPR+AR   GRE
Sbjct:  131 LKHFMKRYGRVAATFHMSVFLGTLGTCYSLIDYGGLDIAELVKDVPILADNLPPAGAGNLAIAYGMTSAIGPPRAVLTVTVTPRIARFLAGRE 223          
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Match: A0A836CBX4_9STRA (DUF1279 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBX4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.510e-18
Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = 1
Query:   13 RRLMAEYGPVAATFHISVFLTTMGSFYSLIDYGLDLSLLVKDIPIIANNL--PHPSAGKLALAWGLTSVTGPARALMTITLTPRVARLW 273
            + +M EYGPVAAT H SVFLTT+G  Y+ ++ GLD++ L+  +P I         + G+LA+A+G T +TGPAR ++T+  TP+VA +W
Sbjct:  107 KHIMKEYGPVAATLHGSVFLTTLGGMYAALEKGLDINALLAQLPFIDGAALGSGGAGGQLAVAYGATLMTGPARTILTVVATPKVAHVW 195          
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Match: A0A835ZET6_9STRA (DUF1279 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZET6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.800e-17
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   16 RLMAEYGPVAATFHISVFLTTMGSFYSLIDYGLDLSLLVKDIPIIANNL--PHPSAGKLALAWGLTSVTGPARALMTITLTPRVARLW 273
            R   +YGPVA   H SV++ T+GS Y+ I  GLDL+ L+  IP++  +L   + +AG LA+A+G T +TGP RA++TIT TP  A +W
Sbjct:   13 RFARKYGPVAGVVHSSVYVCTLGSMYTAIASGLDLTSLLAQIPLMDQDLLTANAAAGHLAVAYGATMLTGPMRAVVTITATPAAADVW 100          
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Match: A0A7S0L5M9_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L5M9_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 1.680e-6
Identity = 31/96 (32.29%), Postives = 53/96 (55.21%), Query Frame = 1
Query:    4 AEMRRLMAEYGPVAATFHISVFLTTMGSFYSLIDYGL----DLSLLVKDIP---IIANNLPHPSAGKLALAWGLTSVTGPARALMTITLTPRVARL 270
            A++R L+ EYG +    +  V+L+T+GS +  +D GL    D   +++ +    +   +  +P     A+AW L   T P R L+T+ +TPR+ARL
Sbjct:  105 AKLRALVKEYGALGIGVYAGVYLSTLGSLFLAVDCGLLPAGDALSMLRSVGADRLFDLDKLNPKTSNFAIAWILAKFTEPLRMLVTLAITPRLARL 200          
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Match: A0A7S1XYK1_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYK1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 5.850e-6
Identity = 37/113 (32.74%), Postives = 58/113 (51.33%), Query Frame = 1
Query:   10 MRRLMAEYGPVAATFHISVFLTTMGSFYSLIDYGL-DLSLLVKD------------------IP--IIANNLPH-----PSAGKLALAWGLTSVTGPARALMTITLTPRVARL 270
            +R +   YG VA   + S++  T+G  +S+  +G+ D  ++V D                  +P  I+A    H     P+A  +ALAW  T +T PARAL+T+ +TPR+ARL
Sbjct:   96 LREMWRRYGYVAIGTYFSIYAATLGGAFSVFHFGIVDPEVIVGDPRVAIEKLITFVQNQEEYVPQIILAEPYLHMLRDTPAATNIALAWIATKITEPARALITMGITPRLARL 208          
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Match: L1I877_GUITC (DUF1279 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I877_GUITC)

HSP 1 Score: 52.0 bits (123), Expect = 1.100e-5
Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 1
Query:    1 AAEMRRLMAEYGPVAATFHISVFLTTMGSFYSLIDYGL-DLSLLVKDIPIIANNLPHPSAGKLALAWGLTSVTGPARALMTITLTPRVA 264
            AA+++ +MAEYG +AA FH+S  + T G FY+ +  G+ DL      +P          +G LA A+ L   T P R  +TI + PR+A
Sbjct:  133 AAKLKDVMAEYGRLAAAFHLSGLVLTTGIFYTGLYMGVVDLEPWFDKLPSQLAEGVKNGSGNLAAAFVLAECTAPLRYGLTIAVVPRIA 221          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61692.13722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LFS1_ECTSI2.860e-2960.22DUF1279 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A836CBX4_9STRA1.510e-1846.07DUF1279 domain-containing protein n=1 Tax=Tribonem... [more]
A0A835ZET6_9STRA4.800e-1746.59DUF1279 domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S0L5M9_9EUKA1.680e-632.29Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S1XYK1_9STRA5.850e-632.74Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
L1I877_GUITC1.100e-537.08DUF1279 domain-containing protein n=1 Tax=Guillard... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61692contigH-elongata_contig61692:2871..3173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue4e-23
Seed eggNOG ortholog2880.D8LFS1
EggNOG free text desc.Protein of unknown function (DUF1279)
EggNOG OGs2D0X6@1,2S4UH@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF1279
Ec32 orthologEc-01_001150.1
Exons1
Model size303
Cds size294
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930994.9434605-UTR-H-elongata_contig61692:2870..28791622930994.9434605-UTR-H-elongata_contig61692:2870..2879Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61692 2871..2879 +
1691679654.644999-UTR-H-elongata_contig61692:2870..28791691679654.644999-UTR-H-elongata_contig61692:2870..2879Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig61692 2871..2879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930994.9662588-CDS-H-elongata_contig61692:2879..31731622930994.9662588-CDS-H-elongata_contig61692:2879..3173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61692 2880..3173 +
1691679654.655158-CDS-H-elongata_contig61692:2879..31731691679654.655158-CDS-H-elongata_contig61692:2879..3173Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig61692 2880..3173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61692.13722.1prot_H-elongata_contig61692.13722.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig61692 2880..3173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig61692.13722.1

>prot_H-elongata_contig61692.13722.1 ID=prot_H-elongata_contig61692.13722.1|Name=mRNA_H-elongata_contig61692.13722.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MRRLMAEYGPVAATFHISVFLTTMGSFYSLIDYGLDLSLLVKDIPIIANN
LPHPSAGKLALAWGLTSVTGPARALMTITLTPRVARLWWGRETKRKLK
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mRNA from alignment at H-elongata_contig61692:2871..3173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig61692.13722.1 ID=mRNA_H-elongata_contig61692.13722.1|Name=mRNA_H-elongata_contig61692.13722.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig61692:2871..3173+ (Himanthalia elongata Himel1 dioecious)
GCGGCCGAGATGAGAAGACTCATGGCGGAATACGGCCCGGTGGCCGCTAC CTTCCACATATCTGTCTTTCTCACGACCATGGGGAGTTTCTACTCGCTCA TCGACTACGGCCTGGATCTGTCGTTGCTCGTAAAGGACATCCCTATTATC GCTAACAATCTCCCGCACCCGAGCGCGGGAAAGCTAGCGTTAGCGTGGGG GCTCACCTCGGTAACGGGGCCGGCGAGAGCCCTGATGACGATCACGCTCA CACCGCGCGTGGCTAGACTCTGGTGGGGTCGCGAGACCAAGCGAAAGCTG AAG
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Coding sequence (CDS) from alignment at H-elongata_contig61692:2871..3173+

>mRNA_H-elongata_contig61692.13722.1 ID=mRNA_H-elongata_contig61692.13722.1|Name=mRNA_H-elongata_contig61692.13722.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig61692:2871..3173+ (Himanthalia elongata Himel1 dioecious)
ATGAGAAGACTCATGGCGGAATACGGCCCGGTGGCCGCTACCTTCCACAT
ATCTGTCTTTCTCACGACCATGGGGAGTTTCTACTCGCTCATCGACTACG
GCCTGGATCTGTCGTTGCTCGTAAAGGACATCCCTATTATCGCTAACAAT
CTCCCGCACCCGAGCGCGGGAAAGCTAGCGTTAGCGTGGGGGCTCACCTC
GGTAACGGGGCCGGCGAGAGCCCTGATGACGATCACGCTCACACCGCGCG
TGGCTAGACTCTGGTGGGGTCGCGAGACCAAGCGAAAGCTGAAGATGAGA
AGACTCATGGCGGAATACGGCCCGGTGGCCGCTACCTTCCACATATCTGT
CTTTCTCACGACCATGGGGAGTTTCTACTCGCTCATCGACTACGGCCTGG
ATCTGTCGTTGCTCGTAAAGGACATCCCTATTATCGCTAACAATCTCCCG
CACCCGAGCGCGGGAAAGCTAGCGTTAGCGTGGGGGCTCACCTCGGTAAC
GGGGCCGGCGAGAGCCCTGATGACGATCACGCTCACACCGCGCGTGGCTA
GACTCTGGTGGGGTCGCGAGACCAAGCGAAAGCTGAAG
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